Prupe.8G000800_v2.0.a1

Protein of unknown function (DUF861)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0016005
Physical Location & Seq
Reverse (-)
101353 .. 102665
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G000800.1

Sequence Viewer

Length: 420 bp
ATGGCGTCATTACGTGTTAATAATAGTTTTAGTATATTAAACACCGAAGCCAAGCGCTCCTTATTTTCTGCAACAACAAGGAGGAGCAGAAGATCATCATCAGTGAGACTGACAGTAGTAGCAGAGACTATGTCTACTGACAAATTGGGTATCAAAATTGATAAGAATCCTCCCGAGTCCAGGCTTAGCCAACTGGGCGTCAGAAATTGGCCCAAGTGGAGTTGCCCCCCAAGCAAATTTCCATGGACATACAGTGACAAAGAGACTTGCTATCTGCTGGAAGGAAAAGTGAAGGTTACCCCAGATGGGTCAAATGAGTCAGTTGAGATTGGTGCTGGTGACTTGGTGGAATTTCCAAAGGGAATGAGCTGCACTTGGGACGTGTCAGTGGCTGTAGACAAGCACTATAACTTCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_3

Protein Analysis

140

Amino Acids

15.54

Weight (kDa)

9.24

Isoelectric Point (pI)

57.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016005)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10300
fragaria_vesca FvH4_2g00100 FvH4_2g00100
malus_domestica MD00G1089100.v1.1
prunus_persica Prupe.8G000800_v2.0.a1
pyrus_communis pycom215g00110
rosa_chinensis RchiOBHm_Chr6g0249351
rosa_laevigata RLG00000015589
rosa_roxburghii Rroxscaffold_7G00217820
rosa_rugosa Rorug05G0491000.1
rosa_samantha Rh6AG001400 Rh6BG008800 Rh6CG000500 Rh6DG000400
rosa_wichuraiana Rw6G000200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 134, 396
AcsI RAATTY 2 cut(s) 236, 350
AcuI CTGAAG 1 cut(s) 397
AcyI GRCGYC 2 cut(s) 5, 198
AfeI AGCGCT 1 cut(s) 56
AfiI CCNNNNNNNGG 2 cut(s) 180, 306
AflIII ACRYGT 2 cut(s) 13, 381
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 2 cut(s) 369, 417
AluI AGCT 2 cut(s) 369, 417
Alw26I GTCTC 3 cut(s) 100, 119, 257
AlwNI CAGNNNCTG 1 cut(s) 392
Ama87I CYCGRG 1 cut(s) 173
Aor51HI AGCGCT 1 cut(s) 56
AoxI GGCC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 369
ApoI RAATTY 2 cut(s) 236, 350
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 350
AvaI CYCGRG 1 cut(s) 173
BbvI GCAGC 1 cut(s) 356
BccI CCATC 1 cut(s) 299
BciT130I CCWGG 1 cut(s) 181
BcoDI GTCTC 3 cut(s) 100, 119, 257
BfaI CTAG 1 cut(s) 418
BfmI CTRYAG 1 cut(s) 393
BfoI RGCGCY 1 cut(s) 58
BglI GCCNNNNNGGC 1 cut(s) 195
BisI GCNGC 1 cut(s) 370
BlpI GCTNAGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 371
Bme1390I CCNGG 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 173
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 181
BmrI ACTGGG 1 cut(s) 203
BmuI ACTGGG 1 cut(s) 203
Bpu1102I GCTNAGC 1 cut(s) 185
BsaAI YACGTR 1 cut(s) 14
BsaBI GATNNNNATC 2 cut(s) 97, 165
BsaHI GRCGYC 2 cut(s) 5, 198
BsaJI CCNNGG 1 cut(s) 242
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 306
Bse1I ACTGG 1 cut(s) 198
Bse8I GATNNNNATC 2 cut(s) 97, 165
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 242
BseJI GATNNNNATC 2 cut(s) 97, 165
BseLI CCNNNNNNNGG 2 cut(s) 180, 306
BseNI ACTGG 1 cut(s) 198
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 356
BsgI GTGCAG 1 cut(s) 355
BshFI GGCC 1 cut(s) 211
BsiHKCI CYCGRG 1 cut(s) 173
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 2 cut(s) 180, 306
BsmAI GTCTC 3 cut(s) 100, 119, 257
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 1 cut(s) 211
BsoBI CYCGRG 1 cut(s) 173
Bsp143I GATC 1 cut(s) 92
Bsp1720I GCTNAGC 1 cut(s) 185
Bsp19I CCATGG 1 cut(s) 242
BspANI GGCC 1 cut(s) 211
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 1 cut(s) 92
BssNI GRCGYC 2 cut(s) 5, 198
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 2 cut(s) 115, 254
BstACI GRCGYC 2 cut(s) 5, 198
BstBAI YACGTR 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 185
BstDSI CCRYGG 1 cut(s) 242
BstEII GGTNACC 1 cut(s) 295
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 1 cut(s) 95
BstMAI GTCTC 3 cut(s) 100, 119, 257
BstMBI GATC 1 cut(s) 92
BstMWI GCNNNNNNNGC 2 cut(s) 195, 231
BstNI CCWGG 1 cut(s) 181
BstPI GGTNACC 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 393
BstV1I GCAGC 1 cut(s) 356
BsuRI GGCC 1 cut(s) 211
BtgI CCRYGG 1 cut(s) 242
BtrI CACGTC 1 cut(s) 382
BtsIMutI CAGTG 3 cut(s) 108, 259, 393
CaiI CAGNNNCTG 1 cut(s) 392
CfoI GCGC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 210
CseI GACGC 1 cut(s) 187
CviAII CATG 1 cut(s) 243
CviJI RGCY 7 cut(s) 50, 184, 189, 211, 369, 392, 417
CviKI_1 RGCY 7 cut(s) 50, 184, 189, 211, 369, 392, 417
DdeI CTNAG 1 cut(s) 185
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 242
Eco47III AGCGCT 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 397
Eco88I CYCGRG 1 cut(s) 173
Eco91I GGTNACC 1 cut(s) 295
EcoO65I GGTNACC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 1 cut(s) 246
FaiI YATR 5 cut(s) 35, 131, 244, 250, 408
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FaqI GGGAC 1 cut(s) 392
FatI CATG 1 cut(s) 242
FblI GTMKAC 2 cut(s) 134, 396
Fnu4HI GCNGC 1 cut(s) 370
Fsp4HI GCNGC 1 cut(s) 370
FspBI CTAG 1 cut(s) 418
GlaI GCGC 1 cut(s) 56
GluI GCNGC 1 cut(s) 370
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 1 cut(s) 211
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 57
Hin1I GRCGYC 2 cut(s) 5, 198
Hin1II CATG 1 cut(s) 246
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 3 cut(s) 166, 176, 317
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 2 cut(s) 135, 397
Hpy188I TCNGA 1 cut(s) 203
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 2 cut(s) 135, 397
HpyAV CCTTC 2 cut(s) 275, 286
HpyCH4III ACNGT 2 cut(s) 115, 254
HpyCH4IV ACGT 2 cut(s) 13, 381
HpyCH4V TGCA 2 cut(s) 71, 372
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 231
HpyF3I CTNAG 1 cut(s) 185
HpySE526I ACGT 2 cut(s) 13, 381
Hsp92I GRCGYC 2 cut(s) 5, 198
Hsp92II CATG 1 cut(s) 246
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 92
LmnI GCTCC 2 cut(s) 62, 84
LpnPI CCDG 6 cut(s) 166, 179, 193, 263, 315, 321
Lsp1109I GCAGC 1 cut(s) 356
MaeI CTAG 1 cut(s) 418
MaeII ACGT 2 cut(s) 13, 381
MaeIII GTNAC 3 cut(s) 254, 295, 338
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 1 cut(s) 102
MluCI AATT 5 cut(s) 143, 156, 205, 236, 350
MlyI GAGTC 2 cut(s) 185, 326
MnlI CCTC 2 cut(s) 75, 180
MseI TTAA 2 cut(s) 18, 38
MspR9I CCNGG 1 cut(s) 181
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 2 cut(s) 195, 231
NcoI CCATGG 1 cut(s) 242
NdeII GATC 1 cut(s) 92
NlaIII CATG 1 cut(s) 246
NmuCI GTSAC 2 cut(s) 254, 338
PfeI GAWTC 1 cut(s) 166
PflFI GACNNNGTC 1 cut(s) 130
PkrI GCNGC 1 cut(s) 371
PleI GAGTC 2 cut(s) 184, 325
PpsI GAGTC 2 cut(s) 184, 325
Ppu21I YACGTR 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 179
PspEI GGTNACC 1 cut(s) 295
PspGI CCWGG 1 cut(s) 179
PspPI GGNCC 1 cut(s) 210
PstNI CAGNNNCTG 1 cut(s) 392
PsyI GACNNNGTC 1 cut(s) 130
SaqAI TTAA 2 cut(s) 18, 38
SatI GCNGC 1 cut(s) 370
Sau3AI GATC 1 cut(s) 92
Sau96I GGNCC 1 cut(s) 210
SchI GAGTC 2 cut(s) 185, 326
ScrFI CCNGG 1 cut(s) 181
SetI ASST 5 cut(s) 16, 297, 371, 384, 419
SfcI CTRYAG 1 cut(s) 393
Sse9I AATT 5 cut(s) 143, 156, 205, 236, 350
SspMI CTAG 1 cut(s) 418
StyD4I CCNGG 1 cut(s) 179
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 2 cut(s) 115, 254
TaiI ACGT 2 cut(s) 16, 384
TasI AATT 5 cut(s) 143, 156, 205, 236, 350
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 2 cut(s) 18, 38
Tru9I TTAA 2 cut(s) 18, 38
TscAI CASTG 3 cut(s) 108, 259, 393
TseFI GTSAC 2 cut(s) 254, 338
TseI GCWGC 1 cut(s) 369
Tsp45I GTSAC 2 cut(s) 254, 338
TspRI CASTG 3 cut(s) 108, 259, 393
Tth111I GACNNNGTC 1 cut(s) 130
XapI RAATTY 2 cut(s) 236, 350
XmiI GTMKAC 2 cut(s) 134, 396
XspI CTAG 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.