Rh6BG008800

Protein of unknown function (DUF861)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016005
Physical Location & Seq
Forward (+)
1253338 .. 1261440
8103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG008800.1

Sequence Viewer

Length: 291 bp
ATGGCTACTGAAAAATTGGGTATCAAGATTGAAAAGAATCCTCCCGAGTCCACGCTCACCCAGCTCGGCGTCAGGAATTGGCCCAAGTGGAGTTGCCCTCCAAGCAAGTTTCCATGGACGTACAGTGACAAAGAGACTTGCTATCTGTTGGAAGGAAAGGTGAAGGTTACTCCTGCTGGATCAAAAGAGTCGGTTGAGATTGGTGGTGGTGACTTGGTGGAATTTCCTAAAGGAATGAGCTGCACGTGGGATGTGTCAGTTGGGGTAGACAAGCACTATAACTTCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_3

Protein Analysis

96

Amino Acids

10.64

Weight (kDa)

6.56

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_3 PF05899 20 - 93 3.1e-29 EutQ-like cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016005)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10300
fragaria_vesca FvH4_2g00100 FvH4_2g00100
malus_domestica MD00G1089100.v1.1
prunus_persica Prupe.8G000800_v2.0.a1
pyrus_communis pycom215g00110
rosa_chinensis RchiOBHm_Chr6g0249351
rosa_laevigata RLG00000015589
rosa_roxburghii Rroxscaffold_7G00217820
rosa_rugosa Rorug05G0491000.1
rosa_samantha Rh6AG001400 Rh6BG008800 Rh6CG000500 Rh6DG000400
rosa_wichuraiana Rw6G000200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 267
AclWI GGATC 1 cut(s) 187
AcsI RAATTY 1 cut(s) 221
AcvI CACGTG 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 1 cut(s) 122
AgsI TTSAA 1 cut(s) 32
AluBI AGCT 2 cut(s) 64, 240
AluI AGCT 2 cut(s) 64, 240
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 187
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 240
ApoI RAATTY 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 3 cut(s) 49, 172, 221
AvaI CYCGRG 1 cut(s) 44
BbrPI CACGTG 1 cut(s) 246
BbvI GCAGC 1 cut(s) 227
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 289
BisI GCNGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 242
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 82, 114
BsaAI YACGTR 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 256
BseXI GCAGC 1 cut(s) 227
BseYI CCCAGC 1 cut(s) 60
BsgI GTGCAG 1 cut(s) 226
BshFI GGCC 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 128
BsnI GGCC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 44
Bsp143I GATC 1 cut(s) 179
Bsp19I CCATGG 1 cut(s) 113
BspANI GGCC 1 cut(s) 82
BspPI GGATC 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 1 cut(s) 179
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 69
BstBAI YACGTR 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 1 cut(s) 182
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 179
BstMWI GCNNNNNNNGC 2 cut(s) 61, 102
BstV1I GCAGC 1 cut(s) 227
BsuRI GGCC 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 113
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 81
CseI GACGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 121
CviAII CATG 1 cut(s) 114
CviJI RGCY 5 cut(s) 5, 64, 82, 240, 288
CviKI_1 RGCY 5 cut(s) 5, 64, 82, 240, 288
CviQI GTAC 1 cut(s) 121
DpnI GATC 1 cut(s) 181
DpnII GATC 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 113
Eco72I CACGTG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 1 cut(s) 117
FaiI YATR 2 cut(s) 115, 279
FatI CATG 1 cut(s) 113
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 241
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 241
FspBI CTAG 1 cut(s) 289
GluI GCNGC 1 cut(s) 241
GsaI CCCAGC 1 cut(s) 64
HaeIII GGCC 1 cut(s) 82
HgaI GACGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 1 cut(s) 117
HinfI GANTC 3 cut(s) 37, 47, 188
HphI GGTGA 3 cut(s) 49, 172, 221
Hpy166II GTNNAC 2 cut(s) 51, 268
Hpy188III TCNNGA 3 cut(s) 25, 44, 73
Hpy8I GTNNAC 2 cut(s) 51, 268
HpyAV CCTTC 2 cut(s) 146, 157
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 2 cut(s) 119, 245
HpyCH4V TGCA 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 102
HpySE526I ACGT 2 cut(s) 119, 245
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 1 cut(s) 117
Kzo9I GATC 1 cut(s) 179
LpnPI CCDG 4 cut(s) 58, 74, 162, 186
Lsp1109I GCAGC 1 cut(s) 227
MaeI CTAG 1 cut(s) 289
MaeII ACGT 2 cut(s) 119, 245
MaeIII GTNAC 3 cut(s) 125, 166, 209
MalI GATC 1 cut(s) 181
MboI GATC 1 cut(s) 179
MluCI AATT 3 cut(s) 14, 76, 221
MlyI GAGTC 2 cut(s) 56, 197
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 2 cut(s) 51, 108
MwoI GCNNNNNNNGC 2 cut(s) 61, 102
NcoI CCATGG 1 cut(s) 113
NdeII GATC 1 cut(s) 179
NlaIII CATG 1 cut(s) 117
NmeAIII GCCGAG 1 cut(s) 45
NmuCI GTSAC 2 cut(s) 125, 209
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 242
PleI GAGTC 2 cut(s) 55, 196
PmaCI CACGTG 1 cut(s) 246
PmlI CACGTG 1 cut(s) 246
PpsI GAGTC 2 cut(s) 55, 196
Ppu21I YACGTR 1 cut(s) 246
PspCI CACGTG 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 81
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 1 cut(s) 179
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 2 cut(s) 56, 197
SetI ASST 6 cut(s) 66, 122, 162, 168, 242, 248
Sse9I AATT 3 cut(s) 14, 76, 221
SspMI CTAG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 2 cut(s) 122, 248
TasI AATT 3 cut(s) 14, 76, 221
TfiI GAWTC 1 cut(s) 37
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 2 cut(s) 125, 209
TseI GCWGC 1 cut(s) 240
Tsp45I GTSAC 2 cut(s) 125, 209
TspRI CASTG 1 cut(s) 130
XapI RAATTY 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.