FvH4_2g00100

Protein of unknown function (DUF861)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016005
Physical Location & Seq
Reverse (-)
216658 .. 218943
2286 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00100.t1

Sequence Viewer

Length: 417 bp
ATGAGGTATGTAAGGATGGAAAGTGCACCCAAGAAAACTACAAAATTGCGGTGGACACCGAGAAATGGTTTGAAAAGAATAAAATATAAATTACAGAAGAAGAGCCACGACTCATTTGGAGAGAGAGAGAGAGAGATAAGGGAGATGGCATCACTGTGCGTTAATAATAGCTTTATATTAAACACCCACACCCATACTCTACACCAGCTCTCCTTTCTGCCTGCAACAACCAACAGAAGAAGAAGAATATCAGTGACCATAGCAGCAGTCTCTTCTTCTTCTATGGCTACTGAAAAATTGGGCATCAAGATTGAAAAGAATCCTCCCGAGTCCACTCTCACCCAACTCGGCGTCAGGAATTGGCCAAATTTACAGGTGGAGTTGCCCTCCGAGCAAGTTTCCATGGACGTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_3

Protein Analysis

139

Amino Acids

15.93

Weight (kDa)

10.46

Isoelectric Point (pI)

50.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016005)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10300
fragaria_vesca FvH4_2g00100 FvH4_2g00100
malus_domestica MD00G1089100.v1.1
prunus_persica Prupe.8G000800_v2.0.a1
pyrus_communis pycom215g00110
rosa_chinensis RchiOBHm_Chr6g0249351
rosa_laevigata RLG00000015589
rosa_roxburghii Rroxscaffold_7G00217820
rosa_rugosa Rorug05G0491000.1
rosa_samantha Rh6AG001400 Rh6BG008800 Rh6CG000500 Rh6DG000400
rosa_wichuraiana Rw6G000200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 49
AcoI YGGCCR 1 cut(s) 362
AcsI RAATTY 1 cut(s) 367
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 1 cut(s) 411
AfiI CCNNNNNNNGG 1 cut(s) 65
AgsI TTSAA 2 cut(s) 73, 314
AluBI AGCT 2 cut(s) 171, 208
AluI AGCT 2 cut(s) 171, 208
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 274
Alw44I GTGCAC 1 cut(s) 24
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 1 cut(s) 362
ApaLI GTGCAC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 367
AsuHPI GGTGA 1 cut(s) 331
AvaI CYCGRG 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 28
BalI TGGCCA 1 cut(s) 364
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 275
BccI CCATC 2 cut(s) 10, 139
BcoDI GTCTC 1 cut(s) 274
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
BmeT110I CYCGRG 1 cut(s) 326
BmsI GCATC 2 cut(s) 158, 312
BplI GAGNNNNNCTC 2 cut(s) 371, 403
BsaHI GRCGYC 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 402
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 402
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 28
BseXI GCAGC 1 cut(s) 275
BshFI GGCC 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 274
BsnI GGCC 1 cut(s) 364
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 28
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 1 cut(s) 49
BspANI GGCC 1 cut(s) 364
BspQI GCTCTTC 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 402
BssNI GRCGYC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 402
Bst4CI ACNGT 2 cut(s) 156, 414
Bst6I CTCTTC 2 cut(s) 95, 277
BstACI GRCGYC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 222
BstDSI CCRYGG 1 cut(s) 402
BstF5I GGATG 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 391
BstSLI GKGCMC 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 275
BsuRI GGCC 1 cut(s) 364
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 1 cut(s) 21
BtsIMutI CAGTG 2 cut(s) 152, 258
Cac8I GCNNGC 1 cut(s) 222
CseI GACGC 1 cut(s) 340
Csp6I GTAC 1 cut(s) 410
CviAII CATG 1 cut(s) 403
CviJI RGCY 5 cut(s) 105, 171, 208, 287, 364
CviKI_1 RGCY 5 cut(s) 105, 171, 208, 287, 364
CviQI GTAC 1 cut(s) 410
EaeI YGGCCR 1 cut(s) 362
Eam1104I CTCTTC 2 cut(s) 95, 277
EarI CTCTTC 2 cut(s) 95, 277
Eco130I CCWWGG 1 cut(s) 402
Eco88I CYCGRG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 1 cut(s) 406
FaiI YATR 7 cut(s) 9, 87, 176, 195, 260, 284, 404
FatI CATG 1 cut(s) 402
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 28
Fsp4HI GCNGC 1 cut(s) 264
GluI GCNGC 1 cut(s) 264
HaeIII GGCC 1 cut(s) 364
HgaI GACGC 1 cut(s) 340
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 1 cut(s) 406
HinfI GANTC 3 cut(s) 110, 319, 329
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 3 cut(s) 26, 54, 333
Hpy188I TCNGA 1 cut(s) 391
Hpy188III TCNNGA 3 cut(s) 307, 326, 355
Hpy8I GTNNAC 3 cut(s) 26, 54, 333
HpyCH4III ACNGT 2 cut(s) 156, 414
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 2 cut(s) 26, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 391
HpySE526I ACGT 1 cut(s) 408
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 1 cut(s) 406
LguI GCTCTTC 1 cut(s) 95
LpnPI CCDG 4 cut(s) 218, 234, 340, 359
Lsp1109I GCAGC 1 cut(s) 275
LweI GCATC 2 cut(s) 158, 312
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 1 cut(s) 253
MboII GAAGA 8 cut(s) 109, 112, 249, 252, 255, 264, 267, 270
MhlI GDGCHC 1 cut(s) 28
MlsI TGGCCA 1 cut(s) 364
MluCI AATT 5 cut(s) 44, 89, 296, 358, 367
MluNI TGGCCA 1 cut(s) 364
MlyI GAGTC 2 cut(s) 104, 338
MnlI CCTC 2 cut(s) 333, 397
Mox20I TGGCCA 1 cut(s) 364
MscI TGGCCA 1 cut(s) 364
MseI TTAA 2 cut(s) 162, 179
MslI CAYNNNNRTG 1 cut(s) 154
Msp20I TGGCCA 1 cut(s) 364
MwoI GCNNNNNNNGC 1 cut(s) 391
NcoI CCATGG 1 cut(s) 402
NlaIII CATG 1 cut(s) 406
NmeAIII GCCGAG 1 cut(s) 327
NmuCI GTSAC 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 319
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 2 cut(s) 104, 337
PpsI GAGTC 2 cut(s) 104, 337
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
RseI CAYNNNNRTG 1 cut(s) 154
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 162, 179
SatI GCNGC 1 cut(s) 264
SchI GAGTC 2 cut(s) 104, 338
SduI GDGCHC 1 cut(s) 28
SetI ASST 5 cut(s) 8, 173, 210, 378, 411
SfaNI GCATC 2 cut(s) 158, 312
SmiMI CAYNNNNRTG 1 cut(s) 154
Sse9I AATT 5 cut(s) 44, 89, 296, 358, 367
SsiI CCGC 1 cut(s) 49
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 2 cut(s) 156, 414
TaiI ACGT 1 cut(s) 411
TasI AATT 5 cut(s) 44, 89, 296, 358, 367
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 2 cut(s) 162, 179
Tru9I TTAA 2 cut(s) 162, 179
TscAI CASTG 2 cut(s) 159, 258
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 253
TspRI CASTG 2 cut(s) 159, 258
VneI GTGCAC 1 cut(s) 24
XapI RAATTY 1 cut(s) 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.