RLG00000015589

Protein of unknown function (DUF861)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016005
Physical Location & Seq
Forward (+)
68272524 .. 68273406
883 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015589

Sequence Viewer

Length: 312 bp
ATGGTGGTGGTGGCCCTGGTGGGTTTGGTGGTTGTGCGTTGGGTGGCTCGATTTAGTGTCATGGGATTGTGGGTTGCAAACCTTTGCTATTGTTCAGTTTCAATAGGGTGGAGTTGCCCTCCAAGCAAGTTTCCATGGACGTACAGTGACAAAGAGACTTGCTATCTGTTGGAAGGAAAAGTGAAGGTTACTCCTGCTGGATCAAAAGAGTCGGTTGAGATTGGTGGTGGTGACTTGGTGGAATTTCCTAAAGGAATGAGCTGCACGTGGGATGTGTCAGTGGGGGTAGACAAGCACTATAACTTCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_3

Protein Analysis

104

Amino Acids

11.26

Weight (kDa)

6.53

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_3 PF05899 37 - 100 2.8e-25 EutQ-like cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016005)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10300
fragaria_vesca FvH4_2g00100 FvH4_2g00100
malus_domestica MD00G1089100.v1.1
prunus_persica Prupe.8G000800_v2.0.a1
pyrus_communis pycom215g00110
rosa_chinensis RchiOBHm_Chr6g0249351
rosa_laevigata RLG00000015589
rosa_roxburghii Rroxscaffold_7G00217820
rosa_rugosa Rorug05G0491000.1
rosa_samantha Rh6AG001400 Rh6BG008800 Rh6CG000500 Rh6DG000400
rosa_wichuraiana Rw6G000200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 288
AclWI GGATC 1 cut(s) 208
AcsI RAATTY 1 cut(s) 242
AcvI CACGTG 1 cut(s) 267
AfaI GTAC 1 cut(s) 143
AgsI TTSAA 1 cut(s) 102
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 208
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 261
ApoI RAATTY 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 242
BbrPI CACGTG 1 cut(s) 267
BbvI GCAGC 1 cut(s) 248
BciT130I CCWGG 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 310
BisI GCNGC 1 cut(s) 262
BlsI GCNGC 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 13
BmrFI CCNGG 1 cut(s) 17
BplI GAGNNNNNCTC 2 cut(s) 103, 135
BsaAI YACGTR 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 15, 134
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 15, 134
BseGI GGATG 1 cut(s) 277
BseXI GCAGC 1 cut(s) 248
BsgI GTGCAG 1 cut(s) 247
BshFI GGCC 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 14
Bsp143I GATC 1 cut(s) 200
Bsp19I CCATGG 1 cut(s) 134
BspANI GGCC 1 cut(s) 14
BspPI GGATC 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 15, 134
BssMI GATC 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 146
BstBAI YACGTR 1 cut(s) 267
BstDSI CCRYGG 1 cut(s) 134
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 1 cut(s) 203
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 200
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 248
BsuRI GGCC 1 cut(s) 14
BtgI CCRYGG 1 cut(s) 134
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 2 cut(s) 151, 285
Cfr13I GGNCC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 142
CviAII CATG 2 cut(s) 61, 135
CviJI RGCY 4 cut(s) 14, 47, 261, 309
CviKI_1 RGCY 4 cut(s) 14, 47, 261, 309
CviQI GTAC 1 cut(s) 142
DpnI GATC 1 cut(s) 202
DpnII GATC 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 134
Eco72I CACGTG 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 2 cut(s) 64, 138
FaiI YATR 3 cut(s) 62, 136, 300
FatI CATG 2 cut(s) 60, 134
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 262
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 262
FspBI CTAG 1 cut(s) 310
GluI GCNGC 1 cut(s) 262
HaeIII GGCC 1 cut(s) 14
Hin1II CATG 2 cut(s) 64, 138
HinfI GANTC 1 cut(s) 209
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 289
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 2 cut(s) 167, 178
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4IV ACGT 2 cut(s) 140, 266
HpyCH4V TGCA 2 cut(s) 77, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpySE526I ACGT 2 cut(s) 140, 266
Hsp92II CATG 2 cut(s) 64, 138
Kzo9I GATC 1 cut(s) 200
LpnPI CCDG 4 cut(s) 2, 29, 183, 207
Lsp1109I GCAGC 1 cut(s) 248
MaeI CTAG 1 cut(s) 310
MaeII ACGT 2 cut(s) 140, 266
MaeIII GTNAC 3 cut(s) 146, 187, 230
MalI GATC 1 cut(s) 202
MboI GATC 1 cut(s) 200
MluCI AATT 1 cut(s) 242
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 123
NcoI CCATGG 1 cut(s) 134
NdeII GATC 1 cut(s) 200
NlaIII CATG 2 cut(s) 64, 138
NmuCI GTSAC 2 cut(s) 146, 230
PkrI GCNGC 1 cut(s) 263
PleI GAGTC 1 cut(s) 217
PmaCI CACGTG 1 cut(s) 267
PmlI CACGTG 1 cut(s) 267
PpsI GAGTC 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 15
PspCI CACGTG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 15
PspPI GGNCC 1 cut(s) 13
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SatI GCNGC 1 cut(s) 262
Sau3AI GATC 1 cut(s) 200
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 17
SetI ASST 5 cut(s) 84, 143, 189, 263, 269
Sse9I AATT 1 cut(s) 242
SspMI CTAG 1 cut(s) 310
StyD4I CCNGG 1 cut(s) 15
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 146
TaiI ACGT 2 cut(s) 143, 269
TaqI TCGA 1 cut(s) 49
TasI AATT 1 cut(s) 242
TscAI CASTG 2 cut(s) 151, 285
TseFI GTSAC 2 cut(s) 146, 230
TseI GCWGC 1 cut(s) 261
Tsp45I GTSAC 2 cut(s) 146, 230
TspRI CASTG 2 cut(s) 151, 285
XapI RAATTY 1 cut(s) 242
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.