AT4G11090

trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010810
Physical Location & Seq
Reverse (-)
6764379 .. 6766329
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G11090.1

Sequence Viewer

Length: 1299 bp
ATGAAGCTAAAATGGGAATCAATCTCTAATCTTCAACAAAACACATATCTCATAAAACTCGTCGCTGCAACACTTATAACTTGTCTCGCTTTTCGTTTCTTCGTCTTCCGCTTCGGCCAATTTTCCCCAGTTCAAGTGTCGGTGACCGGAAACTCCAATTCCCAGATTTCTCCGACGTCTGTTATCTTATCGGATAACGAAGATCAAATTCCCGTCGATATTGAGGTGGAGAAGTGTGATCTATTTACTGGGAAATGGATTAAAGATCCTTTGGGACCAATCTACACGAATGAGTCATGTGGTATCGTTGTAGATGCTCACCAGAATTGCATCACTAATGGTCGACCTGATTCTGGTTTTCTCAATTGGAAATGGAAGCCTAATGACTGTTCCTTGCCTCGGTTTGATTCTCTGAGATTTCTGCAGCTTATGAGGAATAAATCTTGGGCTATAATCGGTGACTCCATTGCTCGTAACCATGTCGAGTCTTTGCTTTGTATGCTATCTACAGTTGAAAAACCTGTTGAAGTGTATCACGATGAGAACTATAGATCGAAGCGTTGGCATTTTCCTTCGTATAACTTTACGGTATCCAACATTTGGTCACCTTTTCTTGTTCAAGCTGATATCTTTGAAGACTCAAATGGTGTCTCATCAGCTGCAGTTCAGCTTCATCTAGATAAACTCGACAATACATGGACTGATCTATTCCCGAGCCTTGACTATGCGATCATCTCTTCAGGGGAATGGTTCTTGAAAACTGCGGTATACCACGAGAATGCTAATCCCGTTGGATGCCATGGCTGCCCGGAGAGTTCGAACATGACGGATTTAGGATTCGACTATGCTTACAATACGTCGTTGCGCCATGTTATGGACTTCATAGCGAAATCTAAAACTAAAGGCATGATCTTTTTCCGGACTTCGATACCTGATCATTTTGAAGATGGGGAATGGCATAACGGTGGGACTTGTAAGAAAACAGAACCGGTGGGTGAAGAGGCAGTCGAGATGAAAGTTCTGAACAAGATATTGAGAGATGTTGAGATTAATCAATTCGAGAGAGTGGTTACGGAGATGGGTCAGGAGAGTGAGAATCTAAAGCTTCTGGATTTTGCTGGCATGTTGCTGACTCGACCCGATGGTCATCCGGGTCCATATAGAGAGTTTAGGCCGTTTGATAAAGATAAGAACGCTACGGTACAGAACGATTGTCTGCATTGGTGCTTGCCTGGTCCGATTGATCACTTGAACGATGTCATATTGGAGATCATAGTGAATGGTCGAACCGGTAAATAA

Protein Analysis

432

Amino Acids

49.18

Weight (kDa)

5.34

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 77 - 131 2e-20 PMR5 N terminal Domain
PC-Esterase PF13839 132 - 423 1.1e-85 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010810)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11090 AT4G23790
fragaria_vesca FvH4_5g04110 FvH4_5g04110
malus_domestica MD06G1102900.v1.1 MD14G1121800.v1.1
prunus_persica Prupe.5G115700_v2.0.a1 Prupe.5G115700_v2.0.a1 Prupe.5G115700_v2.0.a1
pyrus_communis pycom06g09750
rosa_chinensis RchiOBHm_Chr7g0195391
rosa_laevigata RLG00000004124
rosa_multiflora Rmu_sc0007366.1_g000011
rosa_roxburghii Rroxscaffold_3G00260520
rosa_rugosa Rorug07G0023000.1
rosa_samantha Rh7AG150300 Rh7BG151800 Rh7CG155500 Rh7DG151300
rosa_wichuraiana Rw7G012820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 77
AasI GACNNNNNNGTC 1 cut(s) 1143
AatII GACGTC 1 cut(s) 179
AccB7I CCANNNNNTGG 2 cut(s) 600, 874
AccI GTMKAC 2 cut(s) 343, 768
AccIII TCCGGA 1 cut(s) 918
AciI CCGC 2 cut(s) 109, 764
AclWI GGATC 1 cut(s) 260
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 723
AcyI GRCGYC 1 cut(s) 176
AfaI GTAC 1 cut(s) 1203
AfiI CCNNNNNNNGG 4 cut(s) 353, 399, 600, 874
AgeI ACCGGT 2 cut(s) 988, 1289
AgsI TTSAA 9 cut(s) 35, 134, 515, 527, 620, 635, 757, 944, 1252
AjnI CCWGG 1 cut(s) 1231
AluBI AGCT 6 cut(s) 7, 427, 623, 659, 670, 1105
AluI AGCT 6 cut(s) 7, 427, 623, 659, 670, 1105
Alw26I GTCTC 2 cut(s) 89, 655
AlwI GGATC 1 cut(s) 260
Ama87I CYCGRG 1 cut(s) 712
Aor13HI TCCGGA 1 cut(s) 918
AoxI GGCC 2 cut(s) 115, 1172
ApeKI GCWGC 4 cut(s) 65, 424, 659, 804
ApoI RAATTY 1 cut(s) 207
AseI ATTAAT 1 cut(s) 1050
AsiGI ACCGGT 2 cut(s) 988, 1289
AspLEI GCGC 1 cut(s) 867
AspS9I GGNCC 3 cut(s) 275, 1154, 1235
AsuC2I CCSGG 2 cut(s) 809, 1152
AsuHPI GGTGA 5 cut(s) 154, 311, 470, 597, 1007
AsuII TTCGAA 1 cut(s) 818
AvaI CYCGRG 1 cut(s) 712
AvaII GGWCC 3 cut(s) 275, 1154, 1235
BauI CACGAG 1 cut(s) 773
BbsI GAAGAC 2 cut(s) 97, 642
BbvI GCAGC 4 cut(s) 52, 436, 646, 791
BccI CCATC 3 cut(s) 941, 1072, 1136
BceAI ACGGC 1 cut(s) 1159
BciT130I CCWGG 1 cut(s) 1233
BciVI GTATCC 1 cut(s) 601
BclI TGATCA 2 cut(s) 934, 1243
BcnI CCSGG 2 cut(s) 809, 1152
BcoDI GTCTC 2 cut(s) 89, 655
BfaI CTAG 1 cut(s) 677
BfmI CTRYAG 4 cut(s) 422, 507, 547, 660
BfuI GTATCC 1 cut(s) 601
BisI GCNGC 4 cut(s) 66, 425, 660, 805
BlsI GCNGC 4 cut(s) 67, 426, 661, 806
Bme1390I CCNGG 3 cut(s) 809, 1152, 1233
Bme18I GGWCC 3 cut(s) 275, 1154, 1235
BmeT110I CYCGRG 1 cut(s) 712
BmgT120I GGNCC 3 cut(s) 275, 1154, 1235
BmiI GGNNCC 2 cut(s) 276, 1155
BmrFI CCNGG 3 cut(s) 809, 1152, 1233
BmrI ACTGGG 2 cut(s) 122, 258
BmsI GCATC 3 cut(s) 304, 339, 785
BmuI ACTGGG 2 cut(s) 122, 258
BpiI GAAGAC 2 cut(s) 97, 642
Bpu14I TTCGAA 1 cut(s) 818
BpuMI CCSGG 2 cut(s) 809, 1152
BsaBI GATNNNNATC 1 cut(s) 1146
BsaHI GRCGYC 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 398, 799
BsaWI WCCGGW 4 cut(s) 146, 918, 988, 1289
Bsc4I CCNNNNNNNGG 4 cut(s) 353, 399, 600, 874
Bse118I RCCGGY 2 cut(s) 988, 1289
Bse1I ACTGG 2 cut(s) 128, 253
Bse3DI GCAATG 1 cut(s) 465
Bse8I GATNNNNATC 1 cut(s) 1146
BseAI TCCGGA 1 cut(s) 918
BseBI CCWGG 1 cut(s) 1233
BseDI CCNNGG 2 cut(s) 398, 799
BseGI GGATG 2 cut(s) 800, 1147
BseJI GATNNNNATC 1 cut(s) 1146
BseLI CCNNNNNNNGG 4 cut(s) 353, 399, 600, 874
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 1 cut(s) 404
BseNI ACTGG 2 cut(s) 128, 253
BseXI GCAGC 4 cut(s) 52, 436, 646, 791
BshFI GGCC 2 cut(s) 117, 1174
BshTI ACCGGT 2 cut(s) 988, 1289
BsiHKCI CYCGRG 1 cut(s) 712
BsiSI CCGG 6 cut(s) 147, 809, 919, 989, 1151, 1290
BslFI GGGAC 2 cut(s) 288, 982
BslI CCNNNNNNNGG 4 cut(s) 353, 399, 600, 874
BsmAI GTCTC 2 cut(s) 89, 655
BsmFI GGGAC 2 cut(s) 288, 982
BsmI GAATGC 1 cut(s) 784
BsnI GGCC 2 cut(s) 117, 1174
BsoBI CYCGRG 1 cut(s) 712
Bsp119I TTCGAA 1 cut(s) 818
Bsp13I TCCGGA 1 cut(s) 918
Bsp19I CCATGG 1 cut(s) 799
BspACI CCGC 2 cut(s) 109, 764
BspANI GGCC 2 cut(s) 117, 1174
BspCNI CTCAG 1 cut(s) 405
BspEI TCCGGA 1 cut(s) 918
BspLI GGNNCC 2 cut(s) 276, 1155
BspMAI CTGCAG 2 cut(s) 426, 664
BspPI GGATC 1 cut(s) 260
BspT104I TTCGAA 1 cut(s) 818
BsrDI GCAATG 1 cut(s) 465
BsrFI RCCGGY 2 cut(s) 988, 1289
BsrI ACTGG 2 cut(s) 128, 253
BssAI RCCGGY 2 cut(s) 988, 1289
BssECI CCNNGG 2 cut(s) 398, 799
BssNAI GTATAC 1 cut(s) 769
BssNI GRCGYC 1 cut(s) 176
BssSI CACGAG 1 cut(s) 773
BssT1I CCWWGG 1 cut(s) 799
Bst1107I GTATAC 1 cut(s) 769
Bst2BI CACGAG 1 cut(s) 773
Bst2UI CCWGG 1 cut(s) 1233
Bst4CI ACNGT 5 cut(s) 389, 511, 589, 965, 1201
Bst6I CTCTTC 2 cut(s) 742, 993
BstACI GRCGYC 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 818
BstC8I GCNNGC 2 cut(s) 1120, 1229
BstDEI CTNAG 1 cut(s) 413
BstDSI CCRYGG 1 cut(s) 799
BstEII GGTNACC 2 cut(s) 142, 603
BstF5I GGATG 2 cut(s) 800, 1147
BstHHI GCGC 1 cut(s) 867
BstMAI GTCTC 2 cut(s) 89, 655
BstMWI GCNNNNNNNGC 2 cut(s) 499, 804
BstNI CCWGG 1 cut(s) 1233
BstNSI RCATGY 1 cut(s) 1126
BstPI GGTNACC 2 cut(s) 142, 603
BstSCI CCNGG 3 cut(s) 807, 1150, 1231
BstSFI CTRYAG 4 cut(s) 422, 507, 547, 660
BstV1I GCAGC 4 cut(s) 52, 436, 646, 791
BstV2I GAAGAC 2 cut(s) 97, 642
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BstZ17I GTATAC 1 cut(s) 769
BsuI GTATCC 1 cut(s) 601
BsuRI GGCC 2 cut(s) 117, 1174
BtgI CCRYGG 1 cut(s) 799
BtsCI GGATG 2 cut(s) 800, 1147
Cac8I GCNNGC 2 cut(s) 1120, 1229
CfoI GCGC 1 cut(s) 867
Cfr10I RCCGGY 2 cut(s) 988, 1289
Cfr13I GGNCC 3 cut(s) 275, 1154, 1235
Csp6I GTAC 1 cut(s) 1202
CspAI ACCGGT 2 cut(s) 988, 1289
CviAII CATG 8 cut(s) 297, 479, 696, 800, 823, 869, 907, 1123
CviQI GTAC 1 cut(s) 1202
DdeI CTNAG 1 cut(s) 413
DrdI GACNNNNNNGTC 1 cut(s) 1143
DseDI GACNNNNNNGTC 1 cut(s) 1143
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 2 cut(s) 742, 993
EarI CTCTTC 2 cut(s) 742, 993
Eco130I CCWWGG 1 cut(s) 799
Eco32I GATATC 1 cut(s) 628
Eco47I GGWCC 3 cut(s) 275, 1154, 1235
Eco57I CTGAAG 1 cut(s) 723
Eco88I CYCGRG 1 cut(s) 712
Eco91I GGTNACC 2 cut(s) 142, 603
EcoO65I GGTNACC 2 cut(s) 142, 603
EcoRII CCWGG 1 cut(s) 1231
EcoRV GATATC 1 cut(s) 628
EcoT14I CCWWGG 1 cut(s) 799
ErhI CCWWGG 1 cut(s) 799
FaeI CATG 8 cut(s) 300, 482, 699, 803, 826, 872, 910, 1126
FaqI GGGAC 2 cut(s) 288, 982
FatI CATG 8 cut(s) 296, 478, 695, 799, 822, 868, 906, 1122
FbaI TGATCA 2 cut(s) 934, 1243
FblI GTMKAC 2 cut(s) 343, 768
Fnu4HI GCNGC 4 cut(s) 66, 425, 660, 805
FokI GGATG 2 cut(s) 807, 1134
Fsp4HI GCNGC 4 cut(s) 66, 425, 660, 805
FspBI CTAG 1 cut(s) 677
GlaI GCGC 1 cut(s) 866
GluI GCNGC 4 cut(s) 66, 425, 660, 805
HaeIII GGCC 2 cut(s) 117, 1174
HapII CCGG 6 cut(s) 147, 809, 919, 989, 1151, 1290
HhaI GCGC 1 cut(s) 867
Hin1I GRCGYC 1 cut(s) 176
Hin1II CATG 8 cut(s) 300, 482, 699, 803, 826, 872, 910, 1126
Hin6I GCGC 1 cut(s) 865
HinP1I GCGC 1 cut(s) 865
HincII GTYRAC 1 cut(s) 344
HindII GTYRAC 1 cut(s) 344
HindIII AAGCTT 1 cut(s) 1103
HpaII CCGG 6 cut(s) 147, 809, 919, 989, 1151, 1290
HphI GGTGA 5 cut(s) 154, 311, 470, 597, 1007
Hpy166II GTNNAC 2 cut(s) 344, 769
Hpy188I TCNGA 5 cut(s) 174, 193, 414, 1023, 1239
Hpy188III TCNNGA 9 cut(s) 536, 677, 712, 754, 919, 1009, 1060, 1085, 1109
Hpy8I GTNNAC 2 cut(s) 344, 769
Hpy99I CGWCG 4 cut(s) 65, 178, 218, 862
HpyAV CCTTC 1 cut(s) 582
HpyCH4III ACNGT 5 cut(s) 389, 511, 589, 965, 1201
HpyCH4IV ACGT 2 cut(s) 176, 857
HpyCH4V TGCA 5 cut(s) 68, 330, 424, 662, 1219
HpyF10VI GCNNNNNNNGC 2 cut(s) 499, 804
HpyF3I CTNAG 1 cut(s) 413
HpySE526I ACGT 2 cut(s) 176, 857
Hsp92I GRCGYC 1 cut(s) 176
Hsp92II CATG 8 cut(s) 300, 482, 699, 803, 826, 872, 910, 1126
HspAI GCGC 1 cut(s) 865
Kpn2I TCCGGA 1 cut(s) 918
Ksp22I TGATCA 2 cut(s) 934, 1243
Lsp1109I GCAGC 4 cut(s) 52, 436, 646, 791
LweI GCATC 3 cut(s) 304, 339, 785
MaeI CTAG 1 cut(s) 677
MaeII ACGT 2 cut(s) 176, 857
MaeIII GTNAC 5 cut(s) 142, 458, 473, 603, 1069
MboII GAAGA 8 cut(s) 23, 91, 97, 212, 647, 729, 956, 1010
MfeI CAATTG 1 cut(s) 364
MflI RGATCY 1 cut(s) 265
MluCI AATT 6 cut(s) 119, 157, 207, 325, 364, 1055
MlyI GAGTC 5 cut(s) 302, 455, 494, 632, 1126
MmeI TCCRAC 3 cut(s) 197, 618, 772
MnlI CCTC 4 cut(s) 217, 408, 426, 994
MroI TCCGGA 1 cut(s) 918
MseI TTAA 2 cut(s) 261, 1050
MslI CAYNNNNRTG 2 cut(s) 777, 963
MspA1I CMGCKG 1 cut(s) 659
MspI CCGG 6 cut(s) 147, 809, 919, 989, 1151, 1290
MspR9I CCNGG 3 cut(s) 809, 1152, 1233
MunI CAATTG 1 cut(s) 364
Mva1269I GAATGC 1 cut(s) 784
MvaI CCWGG 1 cut(s) 1233
MwoI GCNNNNNNNGC 2 cut(s) 499, 804
NciI CCSGG 2 cut(s) 809, 1152
NcoI CCATGG 1 cut(s) 799
NlaIII CATG 8 cut(s) 300, 482, 699, 803, 826, 872, 910, 1126
NlaIV GGNNCC 2 cut(s) 276, 1155
NmuCI GTSAC 3 cut(s) 142, 458, 603
NspI RCATGY 1 cut(s) 1126
NspV TTCGAA 1 cut(s) 818
PctI GAATGC 1 cut(s) 784
PfeI GAWTC 5 cut(s) 17, 350, 407, 837, 1096
PflMI CCANNNNNTGG 2 cut(s) 600, 874
PinAI ACCGGT 2 cut(s) 988, 1289
PkrI GCNGC 4 cut(s) 67, 426, 661, 806
PleI GAGTC 5 cut(s) 301, 455, 493, 632, 1126
PpsI GAGTC 5 cut(s) 301, 455, 493, 632, 1126
PshBI ATTAAT 1 cut(s) 1050
PsiI TTATAA 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 1231
PspEI GGTNACC 2 cut(s) 142, 603
PspGI CCWGG 1 cut(s) 1231
PspN4I GGNNCC 2 cut(s) 276, 1155
PspPI GGNCC 3 cut(s) 275, 1154, 1235
PstI CTGCAG 2 cut(s) 426, 664
PsuI RGATCY 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 1 cut(s) 1203
RsaNI GTAC 1 cut(s) 1202
RseI CAYNNNNRTG 2 cut(s) 777, 963
SalI GTCGAC 1 cut(s) 342
SaqAI TTAA 2 cut(s) 261, 1050
SatI GCNGC 4 cut(s) 66, 425, 660, 805
Sau96I GGNCC 3 cut(s) 275, 1154, 1235
SchI GAGTC 5 cut(s) 302, 455, 494, 632, 1126
ScrFI CCNGG 3 cut(s) 809, 1152, 1233
SfaNI GCATC 3 cut(s) 304, 339, 785
SfcI CTRYAG 4 cut(s) 422, 507, 547, 660
SfuI TTCGAA 1 cut(s) 818
SinI GGWCC 3 cut(s) 275, 1154, 1235
SmiMI CAYNNNNRTG 2 cut(s) 777, 963
Sse9I AATT 6 cut(s) 119, 157, 207, 325, 364, 1055
SsiI CCGC 2 cut(s) 109, 764
SspMI CTAG 1 cut(s) 677
StyD4I CCNGG 3 cut(s) 807, 1150, 1231
StyI CCWWGG 1 cut(s) 799
TaaI ACNGT 5 cut(s) 389, 511, 589, 965, 1201
TaiI ACGT 2 cut(s) 179, 860
TasI AATT 6 cut(s) 119, 157, 207, 325, 364, 1055
TfiI GAWTC 5 cut(s) 17, 350, 407, 837, 1096
Tru1I TTAA 2 cut(s) 261, 1050
Tru9I TTAA 2 cut(s) 261, 1050
TseFI GTSAC 3 cut(s) 142, 458, 603
TseI GCWGC 4 cut(s) 65, 424, 659, 804
Tsp45I GTSAC 3 cut(s) 142, 458, 603
TspDTI ATGAA 4 cut(s) 17, 662, 871, 1028
TspGWI ACGGA 2 cut(s) 842, 1088
Van91I CCANNNNNTGG 2 cut(s) 600, 874
VpaK11BI GGWCC 3 cut(s) 275, 1154, 1235
VspI ATTAAT 1 cut(s) 1050
XapI RAATTY 1 cut(s) 207
XbaI TCTAGA 1 cut(s) 676
XceI RCATGY 1 cut(s) 1126
XmiI GTMKAC 2 cut(s) 343, 768
XspI CTAG 1 cut(s) 677
ZraI GACGTC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.