Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010810

Physical Location & Seq

Genomic Coordinates Forward (+)

23980337 .. 23984009

Gene Structure 3673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1102900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGAAGCTGAATTGGATGCACTGGTTTTATCACAAGCACAAGCATTTGGTGGTGAAGTTTGGAGTTGCAATCCTTCTGATGGGTCTTGCTTTTCGTCTCTTTCTCTCCACCTCCAATGAGTTTTCGCCCAAAACAGAAGCCCCTTTTCCTGGGGAAACTGAGGATTTAGAACAGCCAATCTCTGTGGAATTTCCACAAAACGAAGATCAGGATGAGATGCCTTTTCCCGGAAAAGAAACCCATTTTCCCGAGAATACTGTGGATTCAGAGCAGCCAATTTCTAGGCTAGTTCCAGGAGATGGAGATCAGGACCAGATACCTCCACCAAATGGAAAGTGCGATCTTTTCTCTGGGGATTGGATTCCGAGTACTTCGGGTGCAGCTTACAATGAGAGCTGCCCCACAATTGAAAATCCTCAGAATTGCATAAGAAATGGGAGGCCTGATACAGGGTTTCTATACTGGAAGTGGAAGCCGCGATATTGTGAAATCCCAAAATTTGATCCAGGGAGATTTCTTGAAATGATGAGGAACAAAGCATGGGCGTTGATTGGTGATTCGATATCTCGTAACCATGTCCAGTCGTTGCTGTGCATGCTCTCCACGGTTGAACGAGCCGTTCAAGTGTACCATGACAAGGATTACAGGTCCAGAAGATGGCACTTCCCCTCTTACAATTTTAGCGTCTCAGTTATTTGGTCCCCATTCCTTGTCCAAGCTGCTATTTTTGAAGACTCTGATGGTGTGTCGTCATCTGAAGTTGAGCTGCATCTTGACAAGCTTGATAAGAAGTGGGTGGATCAGTACCACGGCTGGGACTACATGATAATTTCAACAGGGAAATGGTTTCTCAAAAGTGCTATCTACTACGAGGGCAATGAAGTTCTGGGATGCCATTACTGTCCTAAAAGGAATCTGACAGAGTTGGGGTTTGATTTCTCTTATCGCAAATCCCTGAGATTTGTGATGAACTTTATAGTAAAGTCAGATTACAAGGGCACAATATTTTTCAGAACGTCCACACCTGATCATTTTGAGGGCGGGGAGTGGAATACTGGGGGAAACTGCAAGAAAACGGCCCCAGCTAAAGAAGGTGAGGTTGAAGTGAAGGAGGTAAATAAGATTCTGCGTGGCATTGAACTAGAAGAATTTCCGAAGGCAGCTGCTGAAGCTTCTAAACATGGGGTGAATCTCAAACTCCTTGACCTTTTCCAACTTTCTTTGTTGAGACCTGATGGACATCCAGGTCCATATAGGCAGTATCATCCATTTGAACAAGGCAGAAACGCGAAGGTTCAGACTGATTGTTTGCATTGGTGCTTACCGGGACCTATAGAATCTTGGAATGATATATTAATGGAGATGATAGTAAATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

460

Amino Acids

52.93

Weight (kDa)

5.77

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	112 - 163	1.8e-18	PMR5 N terminal Domain
PC-Esterase	PF13839	164 - 455	1.4e-91	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11090 AT4G23790
fragaria_vesca	FvH4_5g04110 FvH4_5g04110
malus_domestica	MD06G1102900.v1.1 MD14G1121800.v1.1
prunus_persica	Prupe.5G115700_v2.0.a1 Prupe.5G115700_v2.0.a1 Prupe.5G115700_v2.0.a1
pyrus_communis	pycom06g09750
rosa_chinensis	RchiOBHm_Chr7g0195391
rosa_laevigata	RLG00000004124
rosa_multiflora	Rmu_sc0007366.1_g000011
rosa_roxburghii	Rroxscaffold_3G00260520
rosa_rugosa	Rorug07G0023000.1
rosa_samantha	Rh7AG150300 Rh7BG151800 Rh7CG155500 Rh7DG151300
rosa_wichuraiana	Rw7G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1245
AccB7I	CCANNNNNTGG	3 cut(s)	299, 329, 657
AccII	CGCG	2 cut(s)	478, 1289
AciI	CCGC	2 cut(s)	476, 1041
AclWI	GGATC	2 cut(s)	497, 807
AcsI	RAATTY	3 cut(s)	188, 497, 1148
AcuI	CTGAAG	2 cut(s)	777, 1188
AfaI	GTAC	3 cut(s)	370, 629, 806
AfiI	CCNNNNNNNGG	9 cut(s)	79, 149, 227, 299, 329, 449, 637, 657, 814
AgsI	TTSAA	9 cut(s)	410, 521, 611, 623, 731, 834, 1103, 1139, 1274
AjnI	CCWGG	4 cut(s)	148, 292, 505, 1243
AluBI	AGCT	9 cut(s)	7, 383, 396, 719, 766, 781, 1085, 1163, 1172
AluI	AGCT	9 cut(s)	7, 383, 396, 719, 766, 781, 1085, 1163, 1172
Alw26I	GTCTC	3 cut(s)	101, 691, 1222
AlwI	GGATC	2 cut(s)	497, 807
AlwNI	CAGNNNCTG	1 cut(s)	1166
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	2 cut(s)	440, 1077
ApeKI	GCWGC	7 cut(s)	271, 380, 396, 719, 766, 1160, 1163
ApoI	RAATTY	3 cut(s)	188, 497, 1148
ArsI	GACNNNNNNTTYG	2 cut(s)	1291, 1323
AseI	ATTAAT	1 cut(s)	1355
Asp700I	GAANNNNTTC	1 cut(s)	1149
AspS9I	GGNCC	6 cut(s)	310, 648, 699, 1078, 1247, 1328
AsuC2I	CCSGG	2 cut(s)	228, 1326
AsuHPI	GGTGA	4 cut(s)	64, 566, 1106, 1198
AvaI	CYCGRG	1 cut(s)	248
AvaII	GGWCC	5 cut(s)	310, 648, 699, 1247, 1328
BaeGI	GKGCMC	1 cut(s)	1001
BbsI	GAAGAC	1 cut(s)	738
BbvI	GCAGC	7 cut(s)	283, 383, 392, 706, 753, 1150, 1172
BccI	CCATC	5 cut(s)	73, 293, 651, 734, 1229
BceAI	ACGGC	3 cut(s)	602, 826, 1092
BciT130I	CCWGG	4 cut(s)	150, 294, 507, 1245
BclI	TGATCA	1 cut(s)	1027
BcnI	CCSGG	2 cut(s)	228, 1326
BcoDI	GTCTC	3 cut(s)	101, 691, 1222
BfaI	CTAG	3 cut(s)	282, 287, 1142
BfmI	CTRYAG	1 cut(s)	1332
BisI	GCNGC	8 cut(s)	272, 381, 397, 476, 720, 767, 1161, 1164
BlsI	GCNGC	8 cut(s)	273, 382, 398, 477, 721, 768, 1162, 1165
BmcAI	AGTACT	1 cut(s)	370
Bme1390I	CCNGG	6 cut(s)	150, 228, 294, 507, 1245, 1326
Bme18I	GGWCC	5 cut(s)	310, 648, 699, 1247, 1328
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	6 cut(s)	310, 648, 699, 1078, 1247, 1328
BmiI	GGNNCC	3 cut(s)	701, 1080, 1329
BmrFI	CCNGG	6 cut(s)	150, 228, 294, 507, 1245, 1326
BmrI	ACTGGG	1 cut(s)	1065
BmsI	GCATC	4 cut(s)	6, 207, 778, 881
BmuI	ACTGGG	1 cut(s)	1065
BpiI	GAAGAC	1 cut(s)	738
BpuMI	CCSGG	2 cut(s)	228, 1326
BsaBI	GATNNNNATC	2 cut(s)	303, 1239
BsaI	GGTCTC	1 cut(s)	1222
BsaJI	CCNNGG	4 cut(s)	149, 506, 603, 808
Bsc4I	CCNNNNNNNGG	9 cut(s)	79, 149, 227, 299, 329, 449, 637, 657, 814
Bse1I	ACTGG	4 cut(s)	26, 467, 580, 1060
Bse3DI	GCAATG	1 cut(s)	883
Bse8I	GATNNNNATC	2 cut(s)	303, 1239
BseBI	CCWGG	4 cut(s)	150, 294, 507, 1245
BseDI	CCNNGG	4 cut(s)	149, 506, 603, 808
BseGI	GGATG	5 cut(s)	21, 217, 896, 1240, 1264
BseJI	GATNNNNATC	2 cut(s)	303, 1239
BseLI	CCNNNNNNNGG	9 cut(s)	79, 149, 227, 299, 329, 449, 637, 657, 814
BseMI	GCAATG	1 cut(s)	883
BseMII	CTCAG	4 cut(s)	150, 431, 702, 947
BseNI	ACTGG	4 cut(s)	26, 467, 580, 1060
BseSI	GKGCMC	1 cut(s)	1001
BseXI	GCAGC	7 cut(s)	283, 383, 392, 706, 753, 1150, 1172
BseYI	CCCAGC	2 cut(s)	813, 1081
BsgI	GTGCAG	1 cut(s)	399
Bsh1236I	CGCG	2 cut(s)	478, 1289
BshFI	GGCC	2 cut(s)	442, 1079
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	2 cut(s)	228, 1325
BslFI	GGGAC	3 cut(s)	685, 830, 1341
BslI	CCNNNNNNNGG	9 cut(s)	79, 149, 227, 299, 329, 449, 637, 657, 814
BsmAI	GTCTC	3 cut(s)	101, 691, 1222
BsmBI	CGTCTC	2 cut(s)	101, 691
BsmFI	GGGAC	3 cut(s)	685, 830, 1341
BsnI	GGCC	2 cut(s)	442, 1079
Bso31I	GGTCTC	1 cut(s)	1222
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	1001
Bsp143I	GATC	6 cut(s)	205, 304, 340, 502, 799, 1027
BspACI	CCGC	2 cut(s)	476, 1041
BspANI	GGCC	2 cut(s)	442, 1079
BspCNI	CTCAG	4 cut(s)	151, 430, 701, 948
BspFNI	CGCG	2 cut(s)	478, 1289
BspLI	GGNNCC	3 cut(s)	701, 1080, 1329
BspPI	GGATC	2 cut(s)	497, 807
BspTNI	GGTCTC	1 cut(s)	1222
BsrDI	GCAATG	1 cut(s)	883
BsrI	ACTGG	4 cut(s)	26, 467, 580, 1060
BssECI	CCNNGG	4 cut(s)	149, 506, 603, 808
BssMI	GATC	6 cut(s)	205, 304, 340, 502, 799, 1027
Bst2UI	CCWGG	4 cut(s)	150, 294, 507, 1245
Bst4CI	ACNGT	3 cut(s)	259, 607, 902
BstC8I	GCNNGC	1 cut(s)	596
BstDEI	CTNAG	4 cut(s)	159, 417, 688, 956
BstDSI	CCRYGG	2 cut(s)	603, 808
BstENI	CCTNNNNNAGG	1 cut(s)	447
BstF5I	GGATG	5 cut(s)	21, 217, 896, 1240, 1264
BstFNI	CGCG	2 cut(s)	478, 1289
BstKTI	GATC	6 cut(s)	208, 307, 343, 505, 802, 1030
BstMAI	GTCTC	3 cut(s)	101, 691, 1222
BstMBI	GATC	6 cut(s)	205, 304, 340, 502, 799, 1027
BstMWI	GCNNNNNNNGC	2 cut(s)	595, 1169
BstNI	CCWGG	4 cut(s)	150, 294, 507, 1245
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	6 cut(s)	148, 226, 292, 505, 1243, 1324
BstSFI	CTRYAG	1 cut(s)	1332
BstSLI	GKGCMC	1 cut(s)	1001
BstUI	CGCG	2 cut(s)	478, 1289
BstV1I	GCAGC	7 cut(s)	283, 383, 392, 706, 753, 1150, 1172
BstV2I	GAAGAC	1 cut(s)	738
BsuRI	GGCC	2 cut(s)	442, 1079
BtgI	CCRYGG	2 cut(s)	603, 808
BtsCI	GGATG	5 cut(s)	21, 217, 896, 1240, 1264
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	596
CaiI	CAGNNNCTG	1 cut(s)	1166
Cfr13I	GGNCC	6 cut(s)	310, 648, 699, 1078, 1247, 1328
CseI	GACGC	1 cut(s)	673
Csp6I	GTAC	3 cut(s)	369, 628, 805
CspCI	CAANNNNNGTGG	2 cut(s)	165, 200
CviAII	CATG	6 cut(s)	540, 575, 595, 632, 823, 1181
CviQI	GTAC	3 cut(s)	369, 628, 805
DdeI	CTNAG	4 cut(s)	159, 417, 688, 956
DpnI	GATC	6 cut(s)	207, 306, 342, 504, 801, 1029
DpnII	GATC	6 cut(s)	205, 304, 340, 502, 799, 1027
DrdI	GACNNNNNNGTC	1 cut(s)	1245
DseDI	GACNNNNNNGTC	1 cut(s)	1245
Eco147I	AGGCCT	1 cut(s)	442
Eco31I	GGTCTC	1 cut(s)	1222
Eco32I	GATATC	1 cut(s)	564
Eco47I	GGWCC	5 cut(s)	310, 648, 699, 1247, 1328
Eco57I	CTGAAG	2 cut(s)	777, 1188
Eco88I	CYCGRG	1 cut(s)	248
EcoNI	CCTNNNNNAGG	1 cut(s)	447
EcoO109I	RGGNCCY	1 cut(s)	1328
EcoRII	CCWGG	4 cut(s)	148, 292, 505, 1243
EcoRV	GATATC	1 cut(s)	564
Esp3I	CGTCTC	2 cut(s)	101, 691
FaeI	CATG	6 cut(s)	543, 578, 598, 635, 826, 1184
FaqI	GGGAC	3 cut(s)	685, 830, 1341
FatI	CATG	6 cut(s)	539, 574, 594, 631, 822, 1180
FauI	CCCGC	1 cut(s)	1034
FbaI	TGATCA	1 cut(s)	1027
Fnu4HI	GCNGC	8 cut(s)	272, 381, 397, 476, 720, 767, 1161, 1164
FokI	GGATG	5 cut(s)	28, 224, 903, 1227, 1251
Fsp4HI	GCNGC	8 cut(s)	272, 381, 397, 476, 720, 767, 1161, 1164
FspBI	CTAG	3 cut(s)	282, 287, 1142
GluI	GCNGC	8 cut(s)	272, 381, 397, 476, 720, 767, 1161, 1164
GsaI	CCCAGC	2 cut(s)	817, 1085
HaeIII	GGCC	2 cut(s)	442, 1079
HapII	CCGG	2 cut(s)	228, 1325
HgaI	GACGC	1 cut(s)	673
Hin1II	CATG	6 cut(s)	543, 578, 598, 635, 826, 1184
HindIII	AAGCTT	2 cut(s)	779, 1170
HinfI	GANTC	8 cut(s)	263, 361, 557, 734, 913, 1123, 1189, 1337
HpaII	CCGG	2 cut(s)	228, 1325
HphI	GGTGA	4 cut(s)	64, 566, 1106, 1198
Hpy166II	GTNNAC	2 cut(s)	628, 1020
Hpy188III	TCNNGA	6 cut(s)	209, 248, 308, 518, 651, 773
Hpy8I	GTNNAC	2 cut(s)	628, 1020
HpyAV	CCTTC	5 cut(s)	83, 1085, 1102, 1150, 1285
HpyCH4III	ACNGT	3 cut(s)	259, 607, 902
HpyCH4IV	ACGT	1 cut(s)	1016
HpyCH4V	TGCA	8 cut(s)	19, 68, 380, 426, 594, 769, 1068, 1312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	595, 1169
HpyF3I	CTNAG	4 cut(s)	159, 417, 688, 956
HpySE526I	ACGT	1 cut(s)	1016
Hsp92II	CATG	6 cut(s)	543, 578, 598, 635, 826, 1184
Ksp22I	TGATCA	1 cut(s)	1027
Kzo9I	GATC	6 cut(s)	205, 304, 340, 502, 799, 1027
Lsp1109I	GCAGC	7 cut(s)	283, 383, 392, 706, 753, 1150, 1172
LweI	GCATC	4 cut(s)	6, 207, 778, 881
MaeI	CTAG	3 cut(s)	282, 287, 1142
MaeII	ACGT	1 cut(s)	1016
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	6 cut(s)	207, 306, 342, 504, 801, 1029
MboI	GATC	6 cut(s)	205, 304, 340, 502, 799, 1027
MboII	GAAGA	4 cut(s)	215, 666, 743, 1157
MfeI	CAATTG	1 cut(s)	405
MhlI	GDGCHC	1 cut(s)	1001
MluCI	AATT	9 cut(s)	10, 188, 276, 405, 421, 497, 676, 828, 1148
MlyI	GAGTC	1 cut(s)	728
MmeI	TCCRAC	1 cut(s)	1237
MroXI	GAANNNNTTC	1 cut(s)	1149
MseI	TTAA	1 cut(s)	1355
MspA1I	CMGCKG	1 cut(s)	1163
MspI	CCGG	2 cut(s)	228, 1325
MspR9I	CCNGG	6 cut(s)	150, 228, 294, 507, 1245, 1326
MunI	CAATTG	1 cut(s)	405
MvaI	CCWGG	4 cut(s)	150, 294, 507, 1245
MvnI	CGCG	2 cut(s)	478, 1289
MwoI	GCNNNNNNNGC	2 cut(s)	595, 1169
NciI	CCSGG	2 cut(s)	228, 1326
NdeII	GATC	6 cut(s)	205, 304, 340, 502, 799, 1027
NlaIII	CATG	6 cut(s)	543, 578, 598, 635, 826, 1184
NlaIV	GGNNCC	3 cut(s)	701, 1080, 1329
NspI	RCATGY	1 cut(s)	598
PaeI	GCATGC	1 cut(s)	598
PceI	AGGCCT	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	1149
PfeI	GAWTC	7 cut(s)	263, 361, 557, 913, 1123, 1189, 1337
PflMI	CCANNNNNTGG	3 cut(s)	299, 329, 657
PfoI	TCCNGGA	2 cut(s)	226, 292
PkrI	GCNGC	8 cut(s)	273, 382, 398, 477, 721, 768, 1162, 1165
PleI	GAGTC	1 cut(s)	728
PpsI	GAGTC	1 cut(s)	728
PpuMI	RGGWCCY	1 cut(s)	1328
PshBI	ATTAAT	1 cut(s)	1355
Psp5II	RGGWCCY	1 cut(s)	1328
Psp6I	CCWGG	4 cut(s)	148, 292, 505, 1243
PspFI	CCCAGC	2 cut(s)	813, 1081
PspGI	CCWGG	4 cut(s)	148, 292, 505, 1243
PspN4I	GGNNCC	3 cut(s)	701, 1080, 1329
PspPI	GGNCC	6 cut(s)	310, 648, 699, 1078, 1247, 1328
PspPPI	RGGWCCY	1 cut(s)	1328
PstNI	CAGNNNCTG	1 cut(s)	1166
PvuII	CAGCTG	1 cut(s)	1163
RsaI	GTAC	3 cut(s)	370, 629, 806
RsaNI	GTAC	3 cut(s)	369, 628, 805
SaqAI	TTAA	1 cut(s)	1355
SatI	GCNGC	8 cut(s)	272, 381, 397, 476, 720, 767, 1161, 1164
Sau3AI	GATC	6 cut(s)	205, 304, 340, 502, 799, 1027
Sau96I	GGNCC	6 cut(s)	310, 648, 699, 1078, 1247, 1328
ScaI	AGTACT	1 cut(s)	370
SchI	GAGTC	1 cut(s)	728
ScrFI	CCNGG	6 cut(s)	150, 228, 294, 507, 1245, 1326
SduI	GDGCHC	1 cut(s)	1001
SfaNI	GCATC	4 cut(s)	6, 207, 778, 881
SfcI	CTRYAG	1 cut(s)	1332
SinI	GGWCC	5 cut(s)	310, 648, 699, 1247, 1328
SphI	GCATGC	1 cut(s)	598
Sse9I	AATT	9 cut(s)	10, 188, 276, 405, 421, 497, 676, 828, 1148
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	2 cut(s)	476, 1041
SspI	AATATT	1 cut(s)	1005
SspMI	CTAG	3 cut(s)	282, 287, 1142
StuI	AGGCCT	1 cut(s)	442
StyD4I	CCNGG	6 cut(s)	148, 226, 292, 505, 1243, 1324
TaaI	ACNGT	3 cut(s)	259, 607, 902
TaiI	ACGT	1 cut(s)	1019
TaqI	TCGA	1 cut(s)	560
TasI	AATT	9 cut(s)	10, 188, 276, 405, 421, 497, 676, 828, 1148
TatI	WGTACW	1 cut(s)	368
TauI	GCSGC	1 cut(s)	478
TfiI	GAWTC	7 cut(s)	263, 361, 557, 913, 1123, 1189, 1337
Tru1I	TTAA	1 cut(s)	1355
Tru9I	TTAA	1 cut(s)	1355
TscAI	CASTG	1 cut(s)	26
TseI	GCWGC	7 cut(s)	271, 380, 396, 719, 766, 1160, 1163
TspDTI	ATGAA	3 cut(s)	17, 894, 983
TspRI	CASTG	1 cut(s)	26
Van91I	CCANNNNNTGG	3 cut(s)	299, 329, 657
VpaK11BI	GGWCC	5 cut(s)	310, 648, 699, 1247, 1328
VspI	ATTAAT	1 cut(s)	1355
XagI	CCTNNNNNAGG	1 cut(s)	447
XapI	RAATTY	3 cut(s)	188, 497, 1148
XceI	RCATGY	1 cut(s)	598
XmnI	GAANNNNTTC	1 cut(s)	1149
XspI	CTAG	3 cut(s)	282, 287, 1142
ZrmI	AGTACT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.