Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010810

Physical Location & Seq

Genomic Coordinates Forward (+)

11819919 .. 11823649

Gene Structure 3731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G115700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGAAGTTGAACTGGAATCTATCGTTTAATCACAAGCACAAGCATTTGGTGGTGAAGTTTGTAGTTGCAATTCTCTTAATGGGTATTGCTCTTCGTCTCTTTTTTTCTACATCTACTGGGTATTTTTCACCCAGAATAGAAGAAACCCCTTTTCCTGAGAAAACTGTGGCTGCCGAGCAACCAATCTCTGTACAAGTTCCCCCAGATGAACCAATCTCTGTTAAAGTTCCACAAGATGAACCAATCCCTGTACGATTTCCACAAGATGAAGATCAGGATCAGATACCTTTACCCAGAAAAGAAACTCCTTTTCCTGAGAAAACTGTGGTTTCAGAGTCACCGATTTCTGCAGAAGTTCCAGAAAATGGTCAGGATCAGATACCTCCCCTCAAAGGAGAGTGTGATCTTTTCACTGGGGATTGGGTTCCAAATACTTCAGGTCCAGCTTACAATGAGAGCTGCCCCATTATTGAAAATCCTCAGAATTGTATAAGGAATGGGCGGCCTGATACAGGGTATCTATACTGGAGGTGGAATCCGCGAGATTGTGAAATACCAAAATTTGATCCAGAGAGATTCCTTGAAATGATGAGGAATAAAGCATGGGCATTGATTGGTGATTCGATATCTCGCAACCATGTCCAATCATTGCTGTGCATGCTCTCTACGGTTGAACGAGCAGTTCAAGTGTACCATGACAAGGATTATAGGTCCCGAAGATGGCATTTTCCATCTTACAATTTCAGTGTCTCAGTTATTTGGTCCCCTTTTCTTGCCAAAGCTGCTATTTTTGAAGACTATAATGGTGTGGCAACATCTGAAGTTGAGCTGCATCTTGACAAGCTTGATAGGACATGGGTGGATCAATACCACAGTTGGGAATATATGGTAATTTCAACAGGGAAATGGTTTCTCAAAACTGCAATCTACTATGAGAACAATGAAGTGCTGGGATGCCATTACTGTCCTAAAAGGAACCTAACAGAGTTGGGGTTTGATTTTTCTTATCGTAAAGTCCTGAGTTTTGTGATGGACTATTTAGTAACGTCTGATTACAAGGGCATGATCTTTTTTAGAACGTCCACGCCTGATCACTTTGAGAACGGGGAGTGGTTTAATGGGGGAAATTGCAAGAGAACAGCCCCAGTTAAAGAAGGTGAGGTTGAACTGAAGGAGGTACATAAGATTCTGCGTAGAATTGAACTAGAGGTGTTTGAGAAGGCAGCTGCAGAAGCTTCTAAAAGTGGGGTGAATCTCAAACTCCTTGACCTTGTCCCGCTTTCTTTGATGAGGCCTGATGGGCATCCAGGTCCATATAGACATTATCATCCATTTGACCATGACAAAAACGCAAAGGTTCAGACTGATTGTTTGCATTGGTGCTTACCAGGGCCAATAGACTCTTGGAATGATATATTAATGGAGATGGTGGTAAATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

481

Amino Acids

55.51

Weight (kDa)

5.63

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11090 AT4G23790
fragaria_vesca	FvH4_5g04110 FvH4_5g04110
malus_domestica	MD06G1102900.v1.1 MD14G1121800.v1.1
prunus_persica	Prupe.5G115700_v2.0.a1 Prupe.5G115700_v2.0.a1 Prupe.5G115700_v2.0.a1
pyrus_communis	pycom06g09750
rosa_chinensis	RchiOBHm_Chr7g0195391
rosa_laevigata	RLG00000004124
rosa_multiflora	Rmu_sc0007366.1_g000011
rosa_roxburghii	Rroxscaffold_3G00260520
rosa_rugosa	Rorug07G0023000.1
rosa_samantha	Rh7AG150300 Rh7BG151800 Rh7CG155500 Rh7DG151300
rosa_wichuraiana	Rw7G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	365
AccII	CGCG	1 cut(s)	541
AciI	CCGC	3 cut(s)	502, 539, 1277
AclWI	GGATC	4 cut(s)	285, 381, 560, 870
AcsI	RAATTY	1 cut(s)	560
AcuI	CTGAAG	3 cut(s)	420, 840, 1190
AfaI	GTAC	4 cut(s)	192, 252, 692, 1179
AfiI	CCNNNNNNNGG	6 cut(s)	365, 392, 512, 700, 720, 877
AgsI	TTSAA	9 cut(s)	10, 473, 584, 674, 686, 794, 897, 1166, 1202
AjnI	CCWGG	2 cut(s)	1306, 1387
AluBI	AGCT	7 cut(s)	446, 459, 782, 829, 844, 1226, 1235
AluI	AGCT	7 cut(s)	446, 459, 782, 829, 844, 1226, 1235
Alw26I	GTCTC	2 cut(s)	101, 754
AlwI	GGATC	4 cut(s)	285, 381, 560, 870
AoxI	GGCC	3 cut(s)	503, 1292, 1391
ApeKI	GCWGC	6 cut(s)	170, 459, 782, 829, 1223, 1226
ApoI	RAATTY	1 cut(s)	560
ArsI	GACNNNNNNTTYG	2 cut(s)	1354, 1386
AseI	ATTAAT	1 cut(s)	1418
AspS9I	GGNCC	5 cut(s)	440, 711, 762, 1310, 1391
AsuHPI	GGTGA	6 cut(s)	64, 120, 330, 629, 1169, 1261
AvaII	GGWCC	4 cut(s)	440, 711, 762, 1310
BbsI	GAAGAC	1 cut(s)	801
BbvI	GCAGC	6 cut(s)	157, 446, 769, 816, 1213, 1235
BccI	CCATC	5 cut(s)	714, 739, 1024, 1292, 1420
BciT130I	CCWGG	2 cut(s)	1308, 1389
BclI	TGATCA	1 cut(s)	1090
BcoDI	GTCTC	2 cut(s)	101, 754
BfaI	CTAG	1 cut(s)	1205
BfmI	CTRYAG	2 cut(s)	348, 1227
BglI	GCCNNNNNGGC	1 cut(s)	1300
BisI	GCNGC	7 cut(s)	171, 460, 503, 783, 830, 1224, 1227
BlsI	GCNGC	7 cut(s)	172, 461, 504, 784, 831, 1225, 1228
Bme1390I	CCNGG	2 cut(s)	1308, 1389
Bme18I	GGWCC	4 cut(s)	440, 711, 762, 1310
BmgT120I	GGNCC	5 cut(s)	440, 711, 762, 1310, 1391
BmiI	GGNNCC	4 cut(s)	426, 713, 764, 977
BmrFI	CCNGG	2 cut(s)	1308, 1389
BmrI	ACTGGG	3 cut(s)	126, 423, 1139
BmsI	GCATC	3 cut(s)	841, 944, 1312
BmuI	ACTGGG	3 cut(s)	126, 423, 1139
BpiI	GAAGAC	1 cut(s)	801
BpmI	CTGGAG	1 cut(s)	547
BsaBI	GATNNNNATC	3 cut(s)	270, 276, 1302
BsaJI	CCNNGG	1 cut(s)	1388
Bsc4I	CCNNNNNNNGG	6 cut(s)	365, 392, 512, 700, 720, 877
Bse1I	ACTGG	5 cut(s)	17, 121, 418, 530, 1145
Bse3DI	GCAATG	1 cut(s)	647
Bse8I	GATNNNNATC	3 cut(s)	270, 276, 1302
BseBI	CCWGG	2 cut(s)	1308, 1389
BseDI	CCNNGG	1 cut(s)	1388
BseGI	GGATG	3 cut(s)	959, 1303, 1327
BseJI	GATNNNNATC	3 cut(s)	270, 276, 1302
BseLI	CCNNNNNNNGG	6 cut(s)	365, 392, 512, 700, 720, 877
BseMI	GCAATG	1 cut(s)	647
BseMII	CTCAG	5 cut(s)	147, 306, 494, 765, 1010
BseNI	ACTGG	5 cut(s)	17, 121, 418, 530, 1145
BseXI	GCAGC	6 cut(s)	157, 446, 769, 816, 1213, 1235
BseYI	CCCAGC	1 cut(s)	949
Bsh1236I	CGCG	1 cut(s)	541
BshFI	GGCC	3 cut(s)	505, 1294, 1393
BslFI	GGGAC	3 cut(s)	697, 748, 1259
BslI	CCNNNNNNNGG	6 cut(s)	365, 392, 512, 700, 720, 877
BsmAI	GTCTC	2 cut(s)	101, 754
BsmBI	CGTCTC	1 cut(s)	101
BsmFI	GGGAC	3 cut(s)	697, 748, 1259
BsnI	GGCC	3 cut(s)	505, 1294, 1393
Bsp1407I	TGTACA	1 cut(s)	190
Bsp143I	GATC	8 cut(s)	271, 277, 373, 403, 565, 862, 1065, 1090
BspACI	CCGC	3 cut(s)	502, 539, 1277
BspANI	GGCC	3 cut(s)	505, 1294, 1393
BspCNI	CTCAG	5 cut(s)	148, 307, 493, 764, 1011
BspFNI	CGCG	1 cut(s)	541
BspLI	GGNNCC	4 cut(s)	426, 713, 764, 977
BspMAI	CTGCAG	2 cut(s)	352, 1231
BspPI	GGATC	4 cut(s)	285, 381, 560, 870
BspQI	GCTCTTC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	647
BsrGI	TGTACA	1 cut(s)	190
BsrI	ACTGG	5 cut(s)	17, 121, 418, 530, 1145
BssECI	CCNNGG	1 cut(s)	1388
BssMI	GATC	8 cut(s)	271, 277, 373, 403, 565, 862, 1065, 1090
Bst2UI	CCWGG	2 cut(s)	1308, 1389
Bst4CI	ACNGT	5 cut(s)	166, 325, 670, 875, 965
Bst6I	CTCTTC	1 cut(s)	96
BstAUI	TGTACA	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	659
BstDEI	CTNAG	5 cut(s)	156, 315, 480, 751, 1019
BstENI	CCTNNNNNAGG	1 cut(s)	510
BstF5I	GGATG	3 cut(s)	959, 1303, 1327
BstFNI	CGCG	1 cut(s)	541
BstKTI	GATC	8 cut(s)	274, 280, 376, 406, 568, 865, 1068, 1093
BstMAI	GTCTC	2 cut(s)	101, 754
BstMBI	GATC	8 cut(s)	271, 277, 373, 403, 565, 862, 1065, 1090
BstMWI	GCNNNNNNNGC	4 cut(s)	658, 782, 1232, 1300
BstNI	CCWGG	2 cut(s)	1308, 1389
BstNSI	RCATGY	1 cut(s)	661
BstSCI	CCNGG	2 cut(s)	1306, 1387
BstSFI	CTRYAG	2 cut(s)	348, 1227
BstUI	CGCG	1 cut(s)	541
BstV1I	GCAGC	6 cut(s)	157, 446, 769, 816, 1213, 1235
BstV2I	GAAGAC	1 cut(s)	801
BsuRI	GGCC	3 cut(s)	505, 1294, 1393
BtsCI	GGATG	3 cut(s)	959, 1303, 1327
BtsIMutI	CAGTG	2 cut(s)	411, 751
Cac8I	GCNNGC	1 cut(s)	659
Cfr13I	GGNCC	5 cut(s)	440, 711, 762, 1310, 1391
Csp6I	GTAC	4 cut(s)	191, 251, 691, 1178
CviAII	CATG	7 cut(s)	603, 638, 658, 695, 855, 1063, 1340
CviQI	GTAC	4 cut(s)	191, 251, 691, 1178
DdeI	CTNAG	5 cut(s)	156, 315, 480, 751, 1019
DpnI	GATC	8 cut(s)	273, 279, 375, 405, 567, 864, 1067, 1092
DpnII	GATC	8 cut(s)	271, 277, 373, 403, 565, 862, 1065, 1090
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco147I	AGGCCT	1 cut(s)	1294
Eco32I	GATATC	1 cut(s)	627
Eco47I	GGWCC	4 cut(s)	440, 711, 762, 1310
Eco57I	CTGAAG	3 cut(s)	420, 840, 1190
EcoNI	CCTNNNNNAGG	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	711
EcoRII	CCWGG	2 cut(s)	1306, 1387
EcoRV	GATATC	1 cut(s)	627
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	7 cut(s)	606, 641, 661, 698, 858, 1066, 1343
FaqI	GGGAC	3 cut(s)	697, 748, 1259
FatI	CATG	7 cut(s)	602, 637, 657, 694, 854, 1062, 1339
FauI	CCCGC	1 cut(s)	1284
FbaI	TGATCA	1 cut(s)	1090
Fnu4HI	GCNGC	7 cut(s)	171, 460, 503, 783, 830, 1224, 1227
FokI	GGATG	3 cut(s)	966, 1290, 1314
Fsp4HI	GCNGC	7 cut(s)	171, 460, 503, 783, 830, 1224, 1227
FspBI	CTAG	1 cut(s)	1205
GluI	GCNGC	7 cut(s)	171, 460, 503, 783, 830, 1224, 1227
GsaI	CCCAGC	1 cut(s)	953
GsuI	CTGGAG	1 cut(s)	547
HaeIII	GGCC	3 cut(s)	505, 1294, 1393
Hin1II	CATG	7 cut(s)	606, 641, 661, 698, 858, 1066, 1343
HindIII	AAGCTT	2 cut(s)	842, 1233
HinfI	GANTC	8 cut(s)	16, 335, 535, 576, 620, 1186, 1252, 1400
HphI	GGTGA	6 cut(s)	64, 120, 330, 629, 1169, 1261
Hpy166II	GTNNAC	2 cut(s)	691, 1083
Hpy188I	TCNGA	7 cut(s)	282, 334, 378, 483, 820, 1051, 1362
Hpy188III	TCNNGA	9 cut(s)	155, 275, 314, 359, 371, 569, 714, 836, 1018
Hpy8I	GTNNAC	2 cut(s)	691, 1083
HpyAV	CCTTC	3 cut(s)	1148, 1165, 1213
HpyCH4III	ACNGT	5 cut(s)	166, 325, 670, 875, 965
HpyCH4IV	ACGT	2 cut(s)	1046, 1079
HpyCH4V	TGCA	8 cut(s)	68, 350, 657, 832, 923, 1131, 1229, 1375
HpyF10VI	GCNNNNNNNGC	4 cut(s)	658, 782, 1232, 1300
HpyF3I	CTNAG	5 cut(s)	156, 315, 480, 751, 1019
HpySE526I	ACGT	2 cut(s)	1046, 1079
Hsp92II	CATG	7 cut(s)	606, 641, 661, 698, 858, 1066, 1343
Ksp22I	TGATCA	1 cut(s)	1090
Kzo9I	GATC	8 cut(s)	271, 277, 373, 403, 565, 862, 1065, 1090
LguI	GCTCTTC	1 cut(s)	96
Lsp1109I	GCAGC	6 cut(s)	157, 446, 769, 816, 1213, 1235
LweI	GCATC	3 cut(s)	841, 944, 1312
MaeI	CTAG	1 cut(s)	1205
MaeII	ACGT	2 cut(s)	1046, 1079
MaeIII	GTNAC	2 cut(s)	336, 1042
MalI	GATC	8 cut(s)	273, 279, 375, 405, 567, 864, 1067, 1092
MboI	GATC	8 cut(s)	271, 277, 373, 403, 565, 862, 1065, 1090
MboII	GAAGA	5 cut(s)	83, 152, 281, 729, 806
MluCI	AATT	7 cut(s)	69, 484, 560, 739, 891, 1126, 1197
MlyI	GAGTC	2 cut(s)	344, 1394
MnlI	CCTC	9 cut(s)	393, 398, 489, 522, 585, 1153, 1168, 1201, 1284
MseI	TTAA	6 cut(s)	27, 77, 222, 1116, 1149, 1418
MslI	CAYNNNNRTG	1 cut(s)	652
MspA1I	CMGCKG	1 cut(s)	1226
MspR9I	CCNGG	2 cut(s)	1308, 1389
MvaI	CCWGG	2 cut(s)	1308, 1389
MvnI	CGCG	1 cut(s)	541
MwoI	GCNNNNNNNGC	4 cut(s)	658, 782, 1232, 1300
NdeII	GATC	8 cut(s)	271, 277, 373, 403, 565, 862, 1065, 1090
NlaIII	CATG	7 cut(s)	606, 641, 661, 698, 858, 1066, 1343
NlaIV	GGNNCC	4 cut(s)	426, 713, 764, 977
NmeAIII	GCCGAG	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	336
NspI	RCATGY	1 cut(s)	661
PaeI	GCATGC	1 cut(s)	661
PceI	AGGCCT	1 cut(s)	1294
PciSI	GCTCTTC	1 cut(s)	96
PfeI	GAWTC	6 cut(s)	16, 535, 576, 620, 1186, 1252
PflFI	GACNNNGTC	1 cut(s)	1271
PflMI	CCANNNNNTGG	1 cut(s)	365
PkrI	GCNGC	7 cut(s)	172, 461, 504, 784, 831, 1225, 1228
PleI	GAGTC	2 cut(s)	343, 1394
PpsI	GAGTC	2 cut(s)	343, 1394
PpuMI	RGGWCCY	1 cut(s)	711
PshBI	ATTAAT	1 cut(s)	1418
Psp5II	RGGWCCY	1 cut(s)	711
Psp6I	CCWGG	2 cut(s)	1306, 1387
PspFI	CCCAGC	1 cut(s)	949
PspGI	CCWGG	2 cut(s)	1306, 1387
PspN4I	GGNNCC	4 cut(s)	426, 713, 764, 977
PspPI	GGNCC	5 cut(s)	440, 711, 762, 1310, 1391
PspPPI	RGGWCCY	1 cut(s)	711
PstI	CTGCAG	2 cut(s)	352, 1231
PsyI	GACNNNGTC	1 cut(s)	1271
PvuII	CAGCTG	1 cut(s)	1226
RsaI	GTAC	4 cut(s)	192, 252, 692, 1179
RsaNI	GTAC	4 cut(s)	191, 251, 691, 1178
RseI	CAYNNNNRTG	1 cut(s)	652
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	6 cut(s)	27, 77, 222, 1116, 1149, 1418
SatI	GCNGC	7 cut(s)	171, 460, 503, 783, 830, 1224, 1227
Sau3AI	GATC	8 cut(s)	271, 277, 373, 403, 565, 862, 1065, 1090
Sau96I	GGNCC	5 cut(s)	440, 711, 762, 1310, 1391
SchI	GAGTC	2 cut(s)	344, 1394
ScrFI	CCNGG	2 cut(s)	1308, 1389
SfaNI	GCATC	3 cut(s)	841, 944, 1312
SfcI	CTRYAG	2 cut(s)	348, 1227
SinI	GGWCC	4 cut(s)	440, 711, 762, 1310
SmiMI	CAYNNNNRTG	1 cut(s)	652
SphI	GCATGC	1 cut(s)	661
Sse9I	AATT	7 cut(s)	69, 484, 560, 739, 891, 1126, 1197
SseBI	AGGCCT	1 cut(s)	1294
SsiI	CCGC	3 cut(s)	502, 539, 1277
SspMI	CTAG	1 cut(s)	1205
StuI	AGGCCT	1 cut(s)	1294
StyD4I	CCNGG	2 cut(s)	1306, 1387
TaaI	ACNGT	5 cut(s)	166, 325, 670, 875, 965
TaiI	ACGT	2 cut(s)	1049, 1082
TaqI	TCGA	1 cut(s)	623
TasI	AATT	7 cut(s)	69, 484, 560, 739, 891, 1126, 1197
TatI	WGTACW	1 cut(s)	190
TauI	GCSGC	1 cut(s)	505
TfiI	GAWTC	6 cut(s)	16, 535, 576, 620, 1186, 1252
Tru1I	TTAA	6 cut(s)	27, 77, 222, 1116, 1149, 1418
Tru9I	TTAA	6 cut(s)	27, 77, 222, 1116, 1149, 1418
TscAI	CASTG	2 cut(s)	418, 751
TseFI	GTSAC	1 cut(s)	336
TseI	GCWGC	6 cut(s)	170, 459, 782, 829, 1223, 1226
Tsp45I	GTSAC	1 cut(s)	336
TspDTI	ATGAA	5 cut(s)	17, 222, 252, 282, 957
TspRI	CASTG	2 cut(s)	418, 751
Tth111I	GACNNNGTC	1 cut(s)	1271
Van91I	CCANNNNNTGG	1 cut(s)	365
VpaK11BI	GGWCC	4 cut(s)	440, 711, 762, 1310
VspI	ATTAAT	1 cut(s)	1418
XagI	CCTNNNNNAGG	1 cut(s)	510
XapI	RAATTY	1 cut(s)	560
XceI	RCATGY	1 cut(s)	661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1401
XspI	CTAG	1 cut(s)	1205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.