Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010810

Physical Location & Seq

Genomic Coordinates Forward (+)

2453875 .. 2457514

Gene Structure 3640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04110.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGTGATGAACCAAAAGCAGAAGCGATGGATAGGCAAGTCTGTGATTGCAATCTGTTTAATGGGTCTTGTTTATTGTCTCTTTCTCTCTGATTCAACAGAGTATGAAGTACCTGGATTGGAAACCCAATTCCCTGAGAAGAGTCTGGAGTCAGAGCAACCCATCACAGTTCCTGAAGATGGAGATCAGGATGAGATTCCTTTCCCCAAGAAGGACGTGGCTTCAGAGCCTCCAATTTCTGAGGAGGAAGATCGGGATCGGTTTAAGCCTCCCAATAAAGGGAAATGTAATCTTTTCGCTGGGGATTGGATTCCAAATACTTCTGGTCCAATTTACAATGAGAGCTGCCCCTCAATTGAAAGTCCCCAGAATTGTATGAAGAATGGGCGGCCTGATACAGGGTATTTATACTGGAAGTGGAGTCCACGAGATTGTTCAATACCAAAGTTTGAGCCAGAGAAATTTCTTGAAATGATGAGGAACAAGCATTGGGCATTGATTGGTGATTCGATCACTCGTAACCATGTTCAGTCGTTGCTGTGCATGCTCTCCACGGTTGAACAAGCCATTCAAGTATACCATGATAAGGGGTATAGATCCAGAAGATGGCACTTCCCCTCTTACAAGTTTACCATCTCAGTTATCTGGTCCCCGTTCCTTGTAAAAGCGGCTATCTATGAAGACCAGAATGGTGTTTCAACACATGAGGTTGAGCTTCATCTTGACAAGATTGATGATGAATGGATAGATCAATTCCAAGGCTTCGATTACATGATTATTTCAACGGGGAAATGGTTTCTGAAAGCTGCAATCTACTATCAGAACAATGAAGCGTTGGGATGCCATGCATGCTCTAATGGTAATCTGTCAGAGCTGGGATTTGATTTTGCTTACCGCAGAACCCTGAGACATGTGATGAACACTATAGTTTCATCTAATCACAAGGGGACGATCTTTTTCAGAACATCCACACCTGATCACTTTGAGAATGGGGAGTGGAATACTGGGGGAACTTGCACGAAAACAACCCCAGTCAAGGAAGGTAAATTGGAATTGAAGGAGGTACACAAGATTCTGCGTGAGATTGAACTAGAGGAGTTTGAGAAGGCAGCTGCAAAAGCTTCTAGAAATGGGGTGAATCTCAAACTCCTTGACATGGTCTCACTTTCTTTGATGAGGCCTGACGGTCATCCTGGTCCATACAGACAGTATCATCCATTTGAACATAGCAAATACGCCAAGGTTCAGACTGATTGTTTGCATTGGTGCTTACCAGGACCTATAGACTCCTGGAACGATATACTAATGGAAATGGTGGTAAAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

443

Amino Acids

50.91

Weight (kDa)

5.8

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	95 - 146	9.2e-20	PMR5 N terminal Domain
PC-Esterase	PF13839	147 - 438	1.6e-94	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11090 AT4G23790
fragaria_vesca	FvH4_5g04110 FvH4_5g04110
malus_domestica	MD06G1102900.v1.1 MD14G1121800.v1.1
prunus_persica	Prupe.5G115700_v2.0.a1 Prupe.5G115700_v2.0.a1 Prupe.5G115700_v2.0.a1
pyrus_communis	pycom06g09750
rosa_chinensis	RchiOBHm_Chr7g0195391
rosa_laevigata	RLG00000004124
rosa_multiflora	Rmu_sc0007366.1_g000011
rosa_roxburghii	Rroxscaffold_3G00260520
rosa_rugosa	Rorug07G0023000.1
rosa_samantha	Rh7AG150300 Rh7BG151800 Rh7CG155500 Rh7DG151300
rosa_wichuraiana	Rw7G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	606
AccI	GTMKAC	1 cut(s)	576
AciI	CCGC	3 cut(s)	388, 668, 895
AclWI	GGATC	2 cut(s)	264, 591
AcsI	RAATTY	1 cut(s)	461
AcuI	CTGAAG	2 cut(s)	195, 207
AfaI	GTAC	2 cut(s)	111, 1065
AfiI	CCNNNNNNNGG	9 cut(s)	179, 211, 278, 279, 398, 586, 606, 1036, 1156
AflIII	ACRYGT	1 cut(s)	910
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	4 cut(s)	112, 1192, 1273, 1289
AluBI	AGCT	6 cut(s)	345, 715, 806, 874, 1112, 1121
AluI	AGCT	6 cut(s)	345, 715, 806, 874, 1112, 1121
Alw26I	GTCTC	3 cut(s)	83, 901, 1165
AlwI	GGATC	2 cut(s)	264, 591
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	2 cut(s)	389, 1178
ApeKI	GCWGC	4 cut(s)	345, 806, 1109, 1112
ApoI	RAATTY	1 cut(s)	461
ArsI	GACNNNNNNTTYG	2 cut(s)	1240, 1272
AspS9I	GGNCC	4 cut(s)	326, 648, 1196, 1277
AsuHPI	GGTGA	3 cut(s)	16, 515, 1147
AvaII	GGWCC	4 cut(s)	326, 648, 1196, 1277
BauI	CACGAG	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	687
BbvI	GCAGC	4 cut(s)	332, 793, 1099, 1121
BccI	CCATC	5 cut(s)	21, 170, 173, 600, 641
BciT130I	CCWGG	4 cut(s)	114, 1194, 1275, 1291
BclI	TGATCA	1 cut(s)	976
BcoDI	GTCTC	3 cut(s)	83, 901, 1165
BfaI	CTAG	2 cut(s)	1091, 1125
BfmI	CTRYAG	2 cut(s)	924, 1281
BisI	GCNGC	6 cut(s)	346, 389, 669, 807, 1110, 1113
BlsI	GCNGC	6 cut(s)	347, 390, 670, 808, 1111, 1114
Bme1390I	CCNGG	4 cut(s)	114, 1194, 1275, 1291
Bme18I	GGWCC	4 cut(s)	326, 648, 1196, 1277
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	4 cut(s)	326, 648, 1196, 1277
BmiI	GGNNCC	1 cut(s)	650
BmrFI	CCNGG	4 cut(s)	114, 1194, 1275, 1291
BmrI	ACTGGG	2 cut(s)	1014, 1025
BmsI	GCATC	1 cut(s)	830
BmuI	ACTGGG	2 cut(s)	1014, 1025
BpiI	GAAGAC	1 cut(s)	687
BpmI	CTGGAG	1 cut(s)	167
BsaBI	GATNNNNATC	3 cut(s)	50, 183, 255
BsaI	GGTCTC	1 cut(s)	1165
BsaJI	CCNNGG	3 cut(s)	552, 757, 1239
Bsc4I	CCNNNNNNNGG	9 cut(s)	179, 211, 278, 279, 398, 586, 606, 1036, 1156
Bse1I	ACTGG	3 cut(s)	416, 1009, 1031
Bse8I	GATNNNNATC	3 cut(s)	50, 183, 255
BseBI	CCWGG	4 cut(s)	114, 1194, 1275, 1291
BseDI	CCNNGG	3 cut(s)	552, 757, 1239
BseGI	GGATG	5 cut(s)	196, 845, 965, 1189, 1213
BseJI	GATNNNNATC	3 cut(s)	50, 183, 255
BseLI	CCNNNNNNNGG	9 cut(s)	179, 211, 278, 279, 398, 586, 606, 1036, 1156
BseMII	CTCAG	4 cut(s)	126, 231, 651, 896
BseNI	ACTGG	3 cut(s)	416, 1009, 1031
BseRI	GAGGAG	2 cut(s)	257, 1109
BseXI	GCAGC	4 cut(s)	332, 793, 1099, 1121
BseYI	CCCAGC	2 cut(s)	299, 874
BshFI	GGCC	2 cut(s)	391, 1180
BslFI	GGGAC	3 cut(s)	348, 634, 961
BslI	CCNNNNNNNGG	9 cut(s)	179, 211, 278, 279, 398, 586, 606, 1036, 1156
BsmAI	GTCTC	3 cut(s)	83, 901, 1165
BsmFI	GGGAC	3 cut(s)	348, 634, 961
BsnI	GGCC	2 cut(s)	391, 1180
Bso31I	GGTCTC	1 cut(s)	1165
Bsp143I	GATC	8 cut(s)	184, 250, 256, 510, 596, 748, 951, 976
BspACI	CCGC	3 cut(s)	388, 668, 895
BspANI	GGCC	2 cut(s)	391, 1180
BspCNI	CTCAG	4 cut(s)	127, 232, 650, 897
BspLI	GGNNCC	1 cut(s)	650
BspPI	GGATC	2 cut(s)	264, 591
BspTNI	GGTCTC	1 cut(s)	1165
BsrI	ACTGG	3 cut(s)	416, 1009, 1031
BssECI	CCNNGG	3 cut(s)	552, 757, 1239
BssMI	GATC	8 cut(s)	184, 250, 256, 510, 596, 748, 951, 976
BssNAI	GTATAC	1 cut(s)	577
BssSI	CACGAG	1 cut(s)	426
BssT1I	CCWWGG	2 cut(s)	757, 1239
Bst1107I	GTATAC	1 cut(s)	577
Bst2BI	CACGAG	1 cut(s)	426
Bst2UI	CCWGG	4 cut(s)	114, 1194, 1275, 1291
Bst4CI	ACNGT	4 cut(s)	169, 556, 1187, 1209
Bst6I	CTCTTC	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	545, 850
BstDEI	CTNAG	4 cut(s)	135, 240, 637, 905
BstDSI	CCRYGG	1 cut(s)	552
BstENI	CCTNNNNNAGG	1 cut(s)	396
BstF5I	GGATG	5 cut(s)	196, 845, 965, 1189, 1213
BstKTI	GATC	8 cut(s)	187, 253, 259, 513, 599, 751, 954, 979
BstMAI	GTCTC	3 cut(s)	83, 901, 1165
BstMBI	GATC	8 cut(s)	184, 250, 256, 510, 596, 748, 951, 976
BstMWI	GCNNNNNNNGC	3 cut(s)	544, 849, 1118
BstNI	CCWGG	4 cut(s)	114, 1194, 1275, 1291
BstNSI	RCATGY	3 cut(s)	547, 852, 914
BstSCI	CCNGG	4 cut(s)	112, 1192, 1273, 1289
BstSFI	CTRYAG	2 cut(s)	924, 1281
BstV1I	GCAGC	4 cut(s)	332, 793, 1099, 1121
BstV2I	GAAGAC	1 cut(s)	687
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
BstZ17I	GTATAC	1 cut(s)	577
BsuRI	GGCC	2 cut(s)	391, 1180
BtgI	CCRYGG	1 cut(s)	552
BtgZI	GCGATG	1 cut(s)	40
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	5 cut(s)	196, 845, 965, 1189, 1213
Cac8I	GCNNGC	2 cut(s)	545, 850
CaiI	CAGNNNCTG	1 cut(s)	173
Cfr13I	GGNCC	4 cut(s)	326, 648, 1196, 1277
Csp6I	GTAC	2 cut(s)	110, 1064
CviAII	CATG	9 cut(s)	524, 544, 581, 704, 772, 845, 849, 911, 1156
CviQI	GTAC	2 cut(s)	110, 1064
DdeI	CTNAG	4 cut(s)	135, 240, 637, 905
DpnI	GATC	8 cut(s)	186, 252, 258, 512, 598, 750, 953, 978
DpnII	GATC	8 cut(s)	184, 250, 256, 510, 596, 748, 951, 976
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco130I	CCWWGG	2 cut(s)	757, 1239
Eco147I	AGGCCT	1 cut(s)	1180
Eco31I	GGTCTC	1 cut(s)	1165
Eco47I	GGWCC	4 cut(s)	326, 648, 1196, 1277
Eco57I	CTGAAG	2 cut(s)	195, 207
EcoNI	CCTNNNNNAGG	1 cut(s)	396
EcoO109I	RGGNCCY	1 cut(s)	1277
EcoRII	CCWGG	4 cut(s)	112, 1192, 1273, 1289
EcoT14I	CCWWGG	2 cut(s)	757, 1239
EcoT22I	ATGCAT	1 cut(s)	850
ErhI	CCWWGG	2 cut(s)	757, 1239
FaeI	CATG	9 cut(s)	527, 547, 584, 707, 775, 848, 852, 914, 1159
FaqI	GGGAC	3 cut(s)	348, 634, 961
FatI	CATG	9 cut(s)	523, 543, 580, 703, 771, 844, 848, 910, 1155
FbaI	TGATCA	1 cut(s)	976
FblI	GTMKAC	1 cut(s)	576
Fnu4HI	GCNGC	6 cut(s)	346, 389, 669, 807, 1110, 1113
FokI	GGATG	5 cut(s)	203, 852, 952, 1176, 1200
Fsp4HI	GCNGC	6 cut(s)	346, 389, 669, 807, 1110, 1113
FspBI	CTAG	2 cut(s)	1091, 1125
GluI	GCNGC	6 cut(s)	346, 389, 669, 807, 1110, 1113
GsaI	CCCAGC	2 cut(s)	303, 878
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	2 cut(s)	391, 1180
Hin1II	CATG	9 cut(s)	527, 547, 584, 707, 775, 848, 852, 914, 1159
HindIII	AAGCTT	1 cut(s)	1119
HphI	GGTGA	3 cut(s)	16, 515, 1147
Hpy166II	GTNNAC	4 cut(s)	425, 577, 630, 1066
Hpy188I	TCNGA	9 cut(s)	91, 154, 226, 241, 801, 822, 871, 962, 1248
Hpy188III	TCNNGA	8 cut(s)	146, 173, 188, 254, 467, 600, 722, 1125
Hpy8I	GTNNAC	4 cut(s)	425, 577, 630, 1066
HpyAV	CCTTC	4 cut(s)	205, 1034, 1051, 1099
HpyCH4III	ACNGT	4 cut(s)	169, 556, 1187, 1209
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	7 cut(s)	50, 543, 809, 848, 1017, 1115, 1261
HpyF10VI	GCNNNNNNNGC	3 cut(s)	544, 849, 1118
HpyF3I	CTNAG	4 cut(s)	135, 240, 637, 905
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	9 cut(s)	527, 547, 584, 707, 775, 848, 852, 914, 1159
Ksp22I	TGATCA	1 cut(s)	976
Kzo9I	GATC	8 cut(s)	184, 250, 256, 510, 596, 748, 951, 976
Lsp1109I	GCAGC	4 cut(s)	332, 793, 1099, 1121
LweI	GCATC	1 cut(s)	830
MaeI	CTAG	2 cut(s)	1091, 1125
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	8 cut(s)	186, 252, 258, 512, 598, 750, 953, 978
MboI	GATC	8 cut(s)	184, 250, 256, 510, 596, 748, 951, 976
MboII	GAAGA	6 cut(s)	151, 188, 260, 391, 615, 692
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	1 cut(s)	596
MluCI	AATT	9 cut(s)	128, 234, 330, 354, 370, 461, 752, 1046, 1052
MlyI	GAGTC	4 cut(s)	151, 158, 430, 1280
Mph1103I	ATGCAT	1 cut(s)	850
MseI	TTAA	2 cut(s)	59, 264
MspA1I	CMGCKG	1 cut(s)	1112
MspR9I	CCNGG	4 cut(s)	114, 1194, 1275, 1291
MunI	CAATTG	1 cut(s)	354
MvaI	CCWGG	4 cut(s)	114, 1194, 1275, 1291
MwoI	GCNNNNNNNGC	3 cut(s)	544, 849, 1118
NdeII	GATC	8 cut(s)	184, 250, 256, 510, 596, 748, 951, 976
NlaIII	CATG	9 cut(s)	527, 547, 584, 707, 775, 848, 852, 914, 1159
NlaIV	GGNNCC	1 cut(s)	650
NsiI	ATGCAT	1 cut(s)	850
NspI	RCATGY	3 cut(s)	547, 852, 914
PaeI	GCATGC	2 cut(s)	547, 852
PceI	AGGCCT	1 cut(s)	1180
PciI	ACATGT	1 cut(s)	910
PfeI	GAWTC	6 cut(s)	92, 196, 310, 506, 1072, 1138
PflFI	GACNNNGTC	1 cut(s)	1157
PflMI	CCANNNNNTGG	1 cut(s)	606
PfoI	TCCNGGA	1 cut(s)	1289
PkrI	GCNGC	6 cut(s)	347, 390, 670, 808, 1111, 1114
PleI	GAGTC	4 cut(s)	150, 157, 429, 1280
PpsI	GAGTC	4 cut(s)	150, 157, 429, 1280
PpuMI	RGGWCCY	1 cut(s)	1277
PscI	ACATGT	1 cut(s)	910
Psp5II	RGGWCCY	1 cut(s)	1277
Psp6I	CCWGG	4 cut(s)	112, 1192, 1273, 1289
PspFI	CCCAGC	2 cut(s)	299, 874
PspGI	CCWGG	4 cut(s)	112, 1192, 1273, 1289
PspN4I	GGNNCC	1 cut(s)	650
PspPI	GGNCC	4 cut(s)	326, 648, 1196, 1277
PspPPI	RGGWCCY	1 cut(s)	1277
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	596
PsyI	GACNNNGTC	1 cut(s)	1157
PvuII	CAGCTG	1 cut(s)	1112
RsaI	GTAC	2 cut(s)	111, 1065
RsaNI	GTAC	2 cut(s)	110, 1064
SaqAI	TTAA	2 cut(s)	59, 264
SatI	GCNGC	6 cut(s)	346, 389, 669, 807, 1110, 1113
Sau3AI	GATC	8 cut(s)	184, 250, 256, 510, 596, 748, 951, 976
Sau96I	GGNCC	4 cut(s)	326, 648, 1196, 1277
SchI	GAGTC	4 cut(s)	151, 158, 430, 1280
ScrFI	CCNGG	4 cut(s)	114, 1194, 1275, 1291
SfaNI	GCATC	1 cut(s)	830
SfcI	CTRYAG	2 cut(s)	924, 1281
SinI	GGWCC	4 cut(s)	326, 648, 1196, 1277
SphI	GCATGC	2 cut(s)	547, 852
Sse9I	AATT	9 cut(s)	128, 234, 330, 354, 370, 461, 752, 1046, 1052
SseBI	AGGCCT	1 cut(s)	1180
SsiI	CCGC	3 cut(s)	388, 668, 895
SspMI	CTAG	2 cut(s)	1091, 1125
StuI	AGGCCT	1 cut(s)	1180
StyD4I	CCNGG	4 cut(s)	112, 1192, 1273, 1289
StyI	CCWWGG	2 cut(s)	757, 1239
TaaI	ACNGT	4 cut(s)	169, 556, 1187, 1209
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	509, 765
TasI	AATT	9 cut(s)	128, 234, 330, 354, 370, 461, 752, 1046, 1052
TauI	GCSGC	2 cut(s)	391, 671
TfiI	GAWTC	6 cut(s)	92, 196, 310, 506, 1072, 1138
Tru1I	TTAA	2 cut(s)	59, 264
Tru9I	TTAA	2 cut(s)	59, 264
TseI	GCWGC	4 cut(s)	345, 806, 1109, 1112
TspDTI	ATGAA	9 cut(s)	23, 120, 392, 693, 707, 753, 843, 921, 932
Tth111I	GACNNNGTC	1 cut(s)	1157
Van91I	CCANNNNNTGG	1 cut(s)	606
VpaK11BI	GGWCC	4 cut(s)	326, 648, 1196, 1277
XagI	CCTNNNNNAGG	1 cut(s)	396
XapI	RAATTY	1 cut(s)	461
XbaI	TCTAGA	1 cut(s)	1124
XceI	RCATGY	3 cut(s)	547, 852, 914
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	576
XspI	CTAG	2 cut(s)	1091, 1125
Zsp2I	ATGCAT	1 cut(s)	850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.