Rh7BG151800

protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010810
Physical Location & Seq
Reverse (-)
11224778 .. 11228433
3656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG151800.1

Sequence Viewer

Length: 1332 bp
ATGGTGATGAACTACAAGCACAAGCGGTGGATAGTCAAGTCTGCAATTGCAATCTTGTTAATGGGTCTTGTCTTTTGTCTCTTTCTCTCTGATTCCACAGAGTATGAACCTGGATTACAACAACAACCCCATTTTCCTGAGAAGAGTCTGGATTCAGGGCAACCAATCCCAGTCCCTGAAGATGAAGATCAGGATGAGATTCCTTTACCCAAGAAAGCTGTGTCTTCAGAGCCACCAATTTCTGAGGAAGAAGATCGGGATCGGATTAAGCCTCCCAATAAAGGAAAATGTAATCTTTTCGTTGGGGATTGGATTCCAAATACTTCTGGTCCAATTTACAATGAGAGCTGCCCCTCAATTGAAAGTCCCCAGAATTGTATGAAGAATGGGCGGCCTGATACAGGGTTTCTGTACTGGAAGTGGAGTCCACGAGATTGTTCAATACCAAAGTTTGAGCCAGAGAAGTTTATTGAAATGATGAGGAATAAGCATTGGGCATTGATTGGTGATTCCATTACTCGTAACCATGTTCAGTCGTTGCTATGCATGCTCTCCACGGTTGAACGACCCATTCAAGTATACCATGACAAGGAGTATAGGTCCAGAAGATGGCACTTCCCCTCTTACAAGTTTACCACCTCAGTTATTTGGTCCCCTTTCCTTGTAAAAGCGGCTATCTATGAAGACCAGAATGGTGTTTCAACACATGAAGTTGAGCTTCATCTTGACAAGCTTGATGATAAATGGATAGATCAATTCCAAAATTTCGATTACATGATCATTTCAACTGGGAAATGGTTTCTCAAATCTGCAATCTACTATGAGAACAATGAAGCGTTGGGATGCCATTACTGTTCTCAAAGGAATCTGACAGAGCTGGGATTTGATTTTGCTTATCGCAAAACCCTGAGATATGTGATGAACACTTTAGTTGCATCTAATCACAAGGGGATGATCTTTTTCAGAACATCCACACCTGATCACTTTGAGAATGGGGAGTGGAATACTGGGGGAACTTGCACGAAAACAGCCCCAGTTAAAGAAGGTGAGATGGAATTGAAGGAGGTACAAAAGATTCTGCGTGAGATTGAATTAGAGGAGTTTGAGAAGGCAGCTACAAAAGCTTCTAGAAACGGGGTGAATCTCAAACTCCTTGACATGGTCTCACTTTCTTTGATGAGGCCTGATGGTCATCCTGGTCCATACAGACAGTATCATCCGTTCGAACATAGCAAATACGCTAAGGTTCAGACTGATTGTTTGCATTGGTGCTTACCAGGACCTATAGACTCTTGGAATGATATACTAATGGAAATGGTGGTAAATGGCTAA

Protein Analysis

443

Amino Acids

51.44

Weight (kDa)

5.87

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 96 - 147 3.2e-19 PMR5 N terminal Domain
PC-Esterase PF13839 148 - 439 2e-93 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010810)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11090 AT4G23790
fragaria_vesca FvH4_5g04110 FvH4_5g04110
malus_domestica MD06G1102900.v1.1 MD14G1121800.v1.1
prunus_persica Prupe.5G115700_v2.0.a1 Prupe.5G115700_v2.0.a1 Prupe.5G115700_v2.0.a1
pyrus_communis pycom06g09750
rosa_chinensis RchiOBHm_Chr7g0195391
rosa_laevigata RLG00000004124
rosa_multiflora Rmu_sc0007366.1_g000011
rosa_roxburghii Rroxscaffold_3G00260520
rosa_rugosa Rorug07G0023000.1
rosa_samantha Rh7AG150300 Rh7BG151800 Rh7CG155500 Rh7DG151300
rosa_wichuraiana Rw7G012820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 609
AccI GTMKAC 1 cut(s) 579
AciI CCGC 3 cut(s) 25, 391, 671
AclWI GGATC 1 cut(s) 267
AcsI RAATTY 1 cut(s) 763
AcuI CTGAAG 2 cut(s) 198, 210
AfaI GTAC 2 cut(s) 413, 1068
AfiI CCNNNNNNNGG 5 cut(s) 281, 401, 589, 609, 1159
AgsI TTSAA 9 cut(s) 362, 441, 473, 563, 575, 702, 786, 1060, 1091
AjnI CCWGG 3 cut(s) 109, 1195, 1276
AluBI AGCT 7 cut(s) 218, 348, 718, 733, 877, 1115, 1124
AluI AGCT 7 cut(s) 218, 348, 718, 733, 877, 1115, 1124
Alw26I GTCTC 2 cut(s) 83, 1168
AlwI GGATC 1 cut(s) 267
AlwNI CAGNNNCTG 1 cut(s) 176
AoxI GGCC 2 cut(s) 392, 1181
ApeKI GCWGC 2 cut(s) 348, 1112
ApoI RAATTY 1 cut(s) 763
ArsI GACNNNNNNTTYG 2 cut(s) 1243, 1275
AspS9I GGNCC 5 cut(s) 329, 600, 651, 1199, 1280
AsuHPI GGTGA 4 cut(s) 16, 518, 1058, 1150
AsuII TTCGAA 1 cut(s) 1224
AvaII GGWCC 5 cut(s) 329, 600, 651, 1199, 1280
BauI CACGAG 1 cut(s) 429
BbsI GAAGAC 2 cut(s) 216, 690
BbvI GCAGC 2 cut(s) 335, 1124
BccI CCATC 3 cut(s) 603, 1045, 1181
BciT130I CCWGG 3 cut(s) 111, 1197, 1278
BclI TGATCA 2 cut(s) 777, 979
BcoDI GTCTC 2 cut(s) 83, 1168
BfaI CTAG 1 cut(s) 1128
BfmI CTRYAG 1 cut(s) 1284
BisI GCNGC 4 cut(s) 349, 392, 672, 1113
BlsI GCNGC 4 cut(s) 350, 393, 673, 1114
Bme1390I CCNGG 3 cut(s) 111, 1197, 1278
Bme18I GGWCC 5 cut(s) 329, 600, 651, 1199, 1280
BmgT120I GGNCC 5 cut(s) 329, 600, 651, 1199, 1280
BmiI GGNNCC 1 cut(s) 653
BmrFI CCNGG 3 cut(s) 111, 1197, 1278
BmrI ACTGGG 4 cut(s) 164, 798, 1017, 1028
BmsI GCATC 2 cut(s) 833, 944
BmuI ACTGGG 4 cut(s) 164, 798, 1017, 1028
BpiI GAAGAC 2 cut(s) 216, 690
Bpu10I CCTNAGC 1 cut(s) 1242
Bpu14I TTCGAA 1 cut(s) 1224
BsaBI GATNNNNATC 3 cut(s) 186, 258, 1191
BsaI GGTCTC 1 cut(s) 1168
BsaJI CCNNGG 1 cut(s) 555
BsaXI ACNNNNNCTCC 2 cut(s) 584, 614
Bsc4I CCNNNNNNNGG 5 cut(s) 281, 401, 589, 609, 1159
Bse1I ACTGG 5 cut(s) 170, 419, 793, 1012, 1034
Bse8I GATNNNNATC 3 cut(s) 186, 258, 1191
BseBI CCWGG 3 cut(s) 111, 1197, 1278
BseDI CCNNGG 1 cut(s) 555
BseGI GGATG 6 cut(s) 199, 848, 957, 968, 1192, 1216
BseJI GATNNNNATC 3 cut(s) 186, 258, 1191
BseLI CCNNNNNNNGG 5 cut(s) 281, 401, 589, 609, 1159
BseMII CTCAG 4 cut(s) 129, 234, 654, 899
BseNI ACTGG 5 cut(s) 170, 419, 793, 1012, 1034
BseRI GAGGAG 1 cut(s) 1112
BseXI GCAGC 2 cut(s) 335, 1124
BseYI CCCAGC 1 cut(s) 877
BshFI GGCC 2 cut(s) 394, 1183
BslFI GGGAC 3 cut(s) 158, 351, 637
BslI CCNNNNNNNGG 5 cut(s) 281, 401, 589, 609, 1159
BsmAI GTCTC 2 cut(s) 83, 1168
BsmFI GGGAC 3 cut(s) 158, 351, 637
BsnI GGCC 2 cut(s) 394, 1183
Bso31I GGTCTC 1 cut(s) 1168
Bsp119I TTCGAA 1 cut(s) 1224
Bsp143I GATC 7 cut(s) 187, 253, 259, 751, 777, 954, 979
BspACI CCGC 3 cut(s) 25, 391, 671
BspANI GGCC 2 cut(s) 394, 1183
BspCNI CTCAG 4 cut(s) 130, 235, 653, 900
BspLI GGNNCC 1 cut(s) 653
BspPI GGATC 1 cut(s) 267
BspT104I TTCGAA 1 cut(s) 1224
BspTNI GGTCTC 1 cut(s) 1168
BsrI ACTGG 5 cut(s) 170, 419, 793, 1012, 1034
BssECI CCNNGG 1 cut(s) 555
BssMI GATC 7 cut(s) 187, 253, 259, 751, 777, 954, 979
BssNAI GTATAC 1 cut(s) 580
BssSI CACGAG 1 cut(s) 429
Bst1107I GTATAC 1 cut(s) 580
Bst2BI CACGAG 1 cut(s) 429
Bst2UI CCWGG 3 cut(s) 111, 1197, 1278
Bst4CI ACNGT 3 cut(s) 559, 854, 1212
Bst6I CTCTTC 1 cut(s) 137
BstBI TTCGAA 1 cut(s) 1224
BstC8I GCNNGC 1 cut(s) 548
BstDEI CTNAG 5 cut(s) 138, 243, 640, 908, 1242
BstDSI CCRYGG 1 cut(s) 555
BstENI CCTNNNNNAGG 1 cut(s) 399
BstF5I GGATG 6 cut(s) 199, 848, 957, 968, 1192, 1216
BstKTI GATC 7 cut(s) 190, 256, 262, 754, 780, 957, 982
BstMAI GTCTC 2 cut(s) 83, 1168
BstMBI GATC 7 cut(s) 187, 253, 259, 751, 777, 954, 979
BstMWI GCNNNNNNNGC 2 cut(s) 547, 1121
BstNI CCWGG 3 cut(s) 111, 1197, 1278
BstNSI RCATGY 1 cut(s) 550
BstSCI CCNGG 3 cut(s) 109, 1195, 1276
BstSFI CTRYAG 1 cut(s) 1284
BstV1I GCAGC 2 cut(s) 335, 1124
BstV2I GAAGAC 2 cut(s) 216, 690
BstZ17I GTATAC 1 cut(s) 580
BsuRI GGCC 2 cut(s) 394, 1183
BtgI CCRYGG 1 cut(s) 555
BtsCI GGATG 6 cut(s) 199, 848, 957, 968, 1192, 1216
Cac8I GCNNGC 1 cut(s) 548
CaiI CAGNNNCTG 1 cut(s) 176
Cfr13I GGNCC 5 cut(s) 329, 600, 651, 1199, 1280
Csp6I GTAC 2 cut(s) 412, 1067
CviAII CATG 6 cut(s) 527, 547, 584, 707, 775, 1159
CviQI GTAC 2 cut(s) 412, 1067
DdeI CTNAG 5 cut(s) 138, 243, 640, 908, 1242
DpnI GATC 7 cut(s) 189, 255, 261, 753, 779, 956, 981
DpnII GATC 7 cut(s) 187, 253, 259, 751, 777, 954, 979
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
Eco147I AGGCCT 1 cut(s) 1183
Eco31I GGTCTC 1 cut(s) 1168
Eco47I GGWCC 5 cut(s) 329, 600, 651, 1199, 1280
Eco57I CTGAAG 2 cut(s) 198, 210
EcoNI CCTNNNNNAGG 1 cut(s) 399
EcoO109I RGGNCCY 1 cut(s) 1280
EcoRII CCWGG 3 cut(s) 109, 1195, 1276
EcoT22I ATGCAT 1 cut(s) 548
FaeI CATG 6 cut(s) 530, 550, 587, 710, 778, 1162
FalI AAGNNNNNCTT 2 cut(s) 702, 734
FaqI GGGAC 3 cut(s) 158, 351, 637
FatI CATG 6 cut(s) 526, 546, 583, 706, 774, 1158
FbaI TGATCA 2 cut(s) 777, 979
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 4 cut(s) 349, 392, 672, 1113
FokI GGATG 6 cut(s) 206, 855, 955, 964, 1179, 1203
Fsp4HI GCNGC 4 cut(s) 349, 392, 672, 1113
FspBI CTAG 1 cut(s) 1128
GluI GCNGC 4 cut(s) 349, 392, 672, 1113
GsaI CCCAGC 1 cut(s) 881
HaeIII GGCC 2 cut(s) 394, 1183
Hin1II CATG 6 cut(s) 530, 550, 587, 710, 778, 1162
HindIII AAGCTT 2 cut(s) 731, 1122
HphI GGTGA 4 cut(s) 16, 518, 1058, 1150
Hpy166II GTNNAC 3 cut(s) 428, 580, 633
Hpy188I TCNGA 7 cut(s) 91, 229, 244, 264, 870, 965, 1251
Hpy188III TCNNGA 7 cut(s) 137, 149, 191, 257, 603, 725, 1128
Hpy8I GTNNAC 3 cut(s) 428, 580, 633
HpyAV CCTTC 3 cut(s) 1037, 1054, 1102
HpyCH4III ACNGT 3 cut(s) 559, 854, 1212
HpyCH4V TGCA 7 cut(s) 44, 50, 546, 812, 935, 1020, 1264
HpyF10VI GCNNNNNNNGC 2 cut(s) 547, 1121
HpyF3I CTNAG 5 cut(s) 138, 243, 640, 908, 1242
Hsp92II CATG 6 cut(s) 530, 550, 587, 710, 778, 1162
Ksp22I TGATCA 2 cut(s) 777, 979
Kzo9I GATC 7 cut(s) 187, 253, 259, 751, 777, 954, 979
Lsp1109I GCAGC 2 cut(s) 335, 1124
LweI GCATC 2 cut(s) 833, 944
MaeI CTAG 1 cut(s) 1128
MaeIII GTNAC 1 cut(s) 521
MalI GATC 7 cut(s) 189, 255, 261, 753, 779, 956, 981
MboI GATC 7 cut(s) 187, 253, 259, 751, 777, 954, 979
MboII GAAGA 9 cut(s) 154, 191, 197, 216, 260, 263, 394, 618, 695
MfeI CAATTG 2 cut(s) 45, 357
MluCI AATT 9 cut(s) 45, 237, 333, 357, 373, 755, 763, 1055, 1091
MlyI GAGTC 3 cut(s) 154, 433, 1283
MnlI CCTC 9 cut(s) 238, 282, 364, 474, 631, 649, 1057, 1090, 1173
Mph1103I ATGCAT 1 cut(s) 548
MseI TTAA 3 cut(s) 59, 267, 1038
MspR9I CCNGG 3 cut(s) 111, 1197, 1278
MunI CAATTG 2 cut(s) 45, 357
MvaI CCWGG 3 cut(s) 111, 1197, 1278
MwoI GCNNNNNNNGC 2 cut(s) 547, 1121
NdeII GATC 7 cut(s) 187, 253, 259, 751, 777, 954, 979
NlaIII CATG 6 cut(s) 530, 550, 587, 710, 778, 1162
NlaIV GGNNCC 1 cut(s) 653
NsiI ATGCAT 1 cut(s) 548
NspI RCATGY 1 cut(s) 550
NspV TTCGAA 1 cut(s) 1224
PaeI GCATGC 1 cut(s) 550
PceI AGGCCT 1 cut(s) 1183
PfeI GAWTC 8 cut(s) 92, 152, 199, 313, 509, 865, 1075, 1141
PflFI GACNNNGTC 1 cut(s) 1160
PflMI CCANNNNNTGG 1 cut(s) 609
PkrI GCNGC 4 cut(s) 350, 393, 673, 1114
PleI GAGTC 3 cut(s) 153, 432, 1283
PpsI GAGTC 3 cut(s) 153, 432, 1283
PpuMI RGGWCCY 1 cut(s) 1280
Psp5II RGGWCCY 1 cut(s) 1280
Psp6I CCWGG 3 cut(s) 109, 1195, 1276
PspFI CCCAGC 1 cut(s) 877
PspGI CCWGG 3 cut(s) 109, 1195, 1276
PspN4I GGNNCC 1 cut(s) 653
PspPI GGNCC 5 cut(s) 329, 600, 651, 1199, 1280
PspPPI RGGWCCY 1 cut(s) 1280
PsrI GAACNNNNNNTAC 4 cut(s) 99, 131, 1205, 1237
PstNI CAGNNNCTG 1 cut(s) 176
PsyI GACNNNGTC 1 cut(s) 1160
RsaI GTAC 2 cut(s) 413, 1068
RsaNI GTAC 2 cut(s) 412, 1067
SaqAI TTAA 3 cut(s) 59, 267, 1038
SatI GCNGC 4 cut(s) 349, 392, 672, 1113
Sau3AI GATC 7 cut(s) 187, 253, 259, 751, 777, 954, 979
Sau96I GGNCC 5 cut(s) 329, 600, 651, 1199, 1280
SchI GAGTC 3 cut(s) 154, 433, 1283
ScrFI CCNGG 3 cut(s) 111, 1197, 1278
SfaNI GCATC 2 cut(s) 833, 944
SfcI CTRYAG 1 cut(s) 1284
SfuI TTCGAA 1 cut(s) 1224
SinI GGWCC 5 cut(s) 329, 600, 651, 1199, 1280
SphI GCATGC 1 cut(s) 550
Sse9I AATT 9 cut(s) 45, 237, 333, 357, 373, 755, 763, 1055, 1091
SseBI AGGCCT 1 cut(s) 1183
SsiI CCGC 3 cut(s) 25, 391, 671
SspMI CTAG 1 cut(s) 1128
StuI AGGCCT 1 cut(s) 1183
StyD4I CCNGG 3 cut(s) 109, 1195, 1276
TaaI ACNGT 3 cut(s) 559, 854, 1212
TaqI TCGA 2 cut(s) 768, 1224
TasI AATT 9 cut(s) 45, 237, 333, 357, 373, 755, 763, 1055, 1091
TatI WGTACW 1 cut(s) 411
TauI GCSGC 2 cut(s) 394, 674
TfiI GAWTC 8 cut(s) 92, 152, 199, 313, 509, 865, 1075, 1141
Tru1I TTAA 3 cut(s) 59, 267, 1038
Tru9I TTAA 3 cut(s) 59, 267, 1038
TseI GCWGC 2 cut(s) 348, 1112
TspDTI ATGAA 9 cut(s) 23, 120, 198, 395, 696, 710, 723, 846, 935
TspGWI ACGGA 1 cut(s) 1209
Tth111I GACNNNGTC 1 cut(s) 1160
Van91I CCANNNNNTGG 1 cut(s) 609
VpaK11BI GGWCC 5 cut(s) 329, 600, 651, 1199, 1280
XagI CCTNNNNNAGG 1 cut(s) 399
XapI RAATTY 1 cut(s) 763
XbaI TCTAGA 1 cut(s) 1127
XceI RCATGY 1 cut(s) 550
XmiI GTMKAC 1 cut(s) 579
XspI CTAG 1 cut(s) 1128
Zsp2I ATGCAT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.