AT4G23790

trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010810
Physical Location & Seq
Forward (+)
12387631 .. 12389908
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G23790.1

Sequence Viewer

Length: 1293 bp
ATGAAGTTGAAGTTGTCATCAATCTCCATGAATCATAAGAATGTGCTTCTCATCAAGCTCATCTCCGCTATTCTGATATCTTTTTTCGCGTTCCGTCTCTTCATTCTCCACTCCAGCGAGTTTTCTCCAATCTTTGCGTCGGTCACCGGAAAATTCGAAGCTCGGTTTCTGCCGCCGGAGATTATCGTACCGGAAAATGAAGATCTGATTCCTCAAGATATTGAAGTAGAGAAGTGTGATCTTTTCGCCGGAAAATGGATCCCAGATTCAGTAGGACCAATCTACACAAACAAATCATGCGGATCACTCATTGACGGTCACCAAAATTGTATCACCAATGGCCGGCCTGACTTAGATTTTCTCTACTGGAAATGGAAACCTCATGACTGTTTGTTACCACGTTTTGACCCTAGAAGATTTCTTCAACTTATGAGGCATAAATCTTGGGCATTTATTGGTGACTCCATATCTCGTAACCACGTCGAATCACTGCTTTGTATGCTCTCTACGATTGAAGAACCGGTTGAAGTATACCATGACATGGAGTACAAATCAAAACGTTGGCATTTCCCTTTACATAACCTTACTGTATCCAACATATGGTCGCCATTTCTTGTTCAAGCCGCTATTTTCGAAGATTCTAACGGTGTCTCGACCGCTTCTGTTCAGCTACATCTTGATAGACTCGATGAGACATGGACCAGTCTCATGCCTAGCTTCGACTATGCGATCATCTCAACCGGTAAATGGTTTCTTAAATCCGCAATTTACCACGAAAATGCAAAACTCGTCGGTTGCCATAACTGTCAGGAAAAACCTCACATAGAAGAGTTAGGATTCGACTATGCTTATAACGCATCGCTGCATAATGTCATGGACTTTCTAGCAGCTGAAGATAACAGTAAAGGCACGGTTTTCTTTCGGACTTCGACTCCCGATCATTTCCAAAACGGGGAATGGCATAGTGGCGGGACGTGTAAGCAAACAGAGCCGGTGAGCGATGAGGAGATTGAGATTAAGGATGTACATAAGATACTAAAAGATATTGAGATTGATCAGTTCAAGAGGGCGGTTAGAGAGAAGACTAACCAGGACGGTGGGAATCTAAAGCTTTTGGATTTCACCCGGATGTTGCTGACCCGACCGGACGGTCATCCGGGTGAGTACCGACAGTTCAGGCCGTTTGATAAAGACAAAAATGCAAAGGTACAGAACGATTGTTTGCATTGGTGCTTGCCTGGTCCGTTTGATTACTTGAATGATGTTATATTGGAGACTATAGTAAATGGCTGA

Protein Analysis

430

Amino Acids

49.57

Weight (kDa)

5.74

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 77 - 130 1.4e-20 PMR5 N terminal Domain
PC-Esterase PF13839 132 - 425 3.4e-89 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010810)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11090 AT4G23790
fragaria_vesca FvH4_5g04110 FvH4_5g04110
malus_domestica MD06G1102900.v1.1 MD14G1121800.v1.1
prunus_persica Prupe.5G115700_v2.0.a1 Prupe.5G115700_v2.0.a1 Prupe.5G115700_v2.0.a1
pyrus_communis pycom06g09750
rosa_chinensis RchiOBHm_Chr7g0195391
rosa_laevigata RLG00000004124
rosa_multiflora Rmu_sc0007366.1_g000011
rosa_roxburghii Rroxscaffold_3G00260520
rosa_rugosa Rorug07G0023000.1
rosa_samantha Rh7AG150300 Rh7BG151800 Rh7CG155500 Rh7DG151300
rosa_wichuraiana Rw7G012820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 852
AasI GACNNNNNNGTC 1 cut(s) 1149
AccB7I CCANNNNNTGG 2 cut(s) 541, 600
AccI GTMKAC 1 cut(s) 531
AccII CGCG 1 cut(s) 89
AciI CCGC 8 cut(s) 66, 173, 300, 624, 657, 762, 969, 1070
AclI AACGTT 1 cut(s) 559
AclWI GGATC 3 cut(s) 253, 266, 310
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 912
AfaI GTAC 5 cut(s) 189, 548, 1026, 1166, 1209
AfiI CCNNNNNNNGG 6 cut(s) 255, 342, 541, 600, 747, 952
AflIII ACRYGT 1 cut(s) 974
AgeI ACCGGT 2 cut(s) 520, 740
AgsI TTSAA 8 cut(s) 10, 224, 425, 515, 527, 620, 1063, 1258
AjiI CACGTC 2 cut(s) 481, 975
AjnI CCWGG 2 cut(s) 1089, 1237
AluBI AGCT 6 cut(s) 58, 161, 670, 717, 890, 1111
AluI AGCT 6 cut(s) 58, 161, 670, 717, 890, 1111
Alw26I GTCTC 5 cut(s) 101, 655, 686, 710, 1268
AlwI GGATC 3 cut(s) 253, 266, 310
AoxI GGCC 3 cut(s) 340, 344, 1178
ApeKI GCWGC 2 cut(s) 862, 887
ApoI RAATTY 1 cut(s) 152
AsiGI ACCGGT 2 cut(s) 520, 740
AspS9I GGNCC 3 cut(s) 275, 699, 1241
AsuC2I CCSGG 2 cut(s) 1126, 1158
AsuHPI GGTGA 7 cut(s) 136, 311, 325, 470, 1006, 1114, 1172
AsuII TTCGAA 2 cut(s) 156, 633
AvaII GGWCC 3 cut(s) 275, 699, 1241
BamHI GGATCC 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 1088
BbvI GCAGC 2 cut(s) 849, 899
BceAI ACGGC 1 cut(s) 1165
BciT130I CCWGG 2 cut(s) 1091, 1239
BciVI GTATCC 1 cut(s) 601
BclI TGATCA 1 cut(s) 1054
BcnI CCSGG 2 cut(s) 1126, 1158
BcoDI GTCTC 5 cut(s) 101, 655, 686, 710, 1268
BfaI CTAG 3 cut(s) 411, 714, 884
BfmI CTRYAG 1 cut(s) 1278
BfuI GTATCC 1 cut(s) 601
BglII AGATCT 1 cut(s) 202
BisI GCNGC 4 cut(s) 173, 624, 863, 888
BlsI GCNGC 4 cut(s) 174, 625, 864, 889
Bme1390I CCNGG 4 cut(s) 1091, 1126, 1158, 1239
Bme18I GGWCC 3 cut(s) 275, 699, 1241
BmgBI CACGTC 2 cut(s) 481, 975
BmgT120I GGNCC 3 cut(s) 275, 699, 1241
BmiI GGNNCC 1 cut(s) 260
BmrFI CCNGG 4 cut(s) 1091, 1126, 1158, 1239
BmsI GCATC 1 cut(s) 866
BpiI GAAGAC 1 cut(s) 1088
BpmI CTGGAG 1 cut(s) 97
Bpu14I TTCGAA 2 cut(s) 156, 633
BpuEI CTTGAG 1 cut(s) 198
BpuMI CCSGG 2 cut(s) 1126, 1158
BsaWI WCCGGW 5 cut(s) 146, 190, 520, 740, 1144
BsaXI ACNNNNNCTCC 2 cut(s) 916, 946
Bsc4I CCNNNNNNNGG 6 cut(s) 255, 342, 541, 600, 747, 952
Bse118I RCCGGY 4 cut(s) 342, 520, 740, 991
Bse1I ACTGG 2 cut(s) 371, 702
BseBI CCWGG 2 cut(s) 1091, 1239
BseGI GGATG 3 cut(s) 1027, 1134, 1153
BseLI CCNNNNNNNGG 6 cut(s) 255, 342, 541, 600, 747, 952
BseNI ACTGG 2 cut(s) 371, 702
BseRI GAGGAG 1 cut(s) 1019
BseXI GCAGC 2 cut(s) 849, 899
Bsh1236I CGCG 1 cut(s) 89
Bsh1285I CGRYCG 2 cut(s) 657, 1145
BshFI GGCC 3 cut(s) 342, 346, 1180
BshTI ACCGGT 2 cut(s) 520, 740
BsiEI CGRYCG 2 cut(s) 657, 1145
BslFI GGGAC 1 cut(s) 985
BslI CCNNNNNNNGG 6 cut(s) 255, 342, 541, 600, 747, 952
BsmAI GTCTC 5 cut(s) 101, 655, 686, 710, 1268
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 985
BsnI GGCC 3 cut(s) 342, 346, 1180
Bsp119I TTCGAA 2 cut(s) 156, 633
Bsp1407I TGTACA 1 cut(s) 1024
Bsp143I GATC 7 cut(s) 202, 238, 258, 302, 729, 937, 1054
BspACI CCGC 8 cut(s) 66, 173, 300, 624, 657, 762, 969, 1070
BspANI GGCC 3 cut(s) 342, 346, 1180
BspFNI CGCG 1 cut(s) 89
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 260
BspPI GGATC 3 cut(s) 253, 266, 310
BspT104I TTCGAA 2 cut(s) 156, 633
BsrFI RCCGGY 4 cut(s) 342, 520, 740, 991
BsrGI TGTACA 1 cut(s) 1024
BsrI ACTGG 2 cut(s) 371, 702
BssAI RCCGGY 4 cut(s) 342, 520, 740, 991
BssMI GATC 7 cut(s) 202, 238, 258, 302, 729, 937, 1054
BssNAI GTATAC 1 cut(s) 532
Bst1107I GTATAC 1 cut(s) 532
Bst2UI CCWGG 2 cut(s) 1091, 1239
Bst6I CTCTTC 2 cut(s) 104, 822
BstAUI TGTACA 1 cut(s) 1024
BstBI TTCGAA 2 cut(s) 156, 633
BstC8I GCNNGC 2 cut(s) 344, 1235
BstDEI CTNAG 1 cut(s) 352
BstEII GGTNACC 2 cut(s) 142, 317
BstF5I GGATG 3 cut(s) 1027, 1134, 1153
BstFNI CGCG 1 cut(s) 89
BstKTI GATC 7 cut(s) 205, 241, 261, 305, 732, 940, 1057
BstMAI GTCTC 5 cut(s) 101, 655, 686, 710, 1268
BstMBI GATC 7 cut(s) 202, 238, 258, 302, 729, 937, 1054
BstMCI CGRYCG 2 cut(s) 657, 1145
BstMWI GCNNNNNNNGC 3 cut(s) 499, 854, 988
BstNI CCWGG 2 cut(s) 1091, 1239
BstPI GGTNACC 2 cut(s) 142, 317
BstSCI CCNGG 4 cut(s) 1089, 1124, 1156, 1237
BstSFI CTRYAG 1 cut(s) 1278
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 2 cut(s) 849, 899
BstV2I GAAGAC 1 cut(s) 1088
BstX2I RGATCY 2 cut(s) 202, 258
BstXI CCANNNNNNTGG 1 cut(s) 1097
BstYI RGATCY 2 cut(s) 202, 258
BstZ17I GTATAC 1 cut(s) 532
BsuI GTATCC 1 cut(s) 601
BsuRI GGCC 3 cut(s) 342, 346, 1180
BtgZI GCGATG 2 cut(s) 843, 1014
BtrI CACGTC 2 cut(s) 481, 975
BtsCI GGATG 3 cut(s) 1027, 1134, 1153
BtsI GCAGTG 1 cut(s) 488
BtsIMutI CAGTG 1 cut(s) 488
Cac8I GCNNGC 2 cut(s) 344, 1235
CciI TCATGA 1 cut(s) 382
Cfr10I RCCGGY 4 cut(s) 342, 520, 740, 991
Cfr13I GGNCC 3 cut(s) 275, 699, 1241
CseI GACGC 1 cut(s) 126
Csp6I GTAC 5 cut(s) 188, 547, 1025, 1165, 1208
CspAI ACCGGT 2 cut(s) 520, 740
CviAII CATG 8 cut(s) 28, 297, 383, 536, 541, 696, 709, 874
CviQI GTAC 5 cut(s) 188, 547, 1025, 1165, 1208
DdeI CTNAG 1 cut(s) 352
DpnI GATC 7 cut(s) 204, 240, 260, 304, 731, 939, 1056
DpnII GATC 7 cut(s) 202, 238, 258, 302, 729, 937, 1054
DrdI GACNNNNNNGTC 1 cut(s) 1149
DseDI GACNNNNNNGTC 1 cut(s) 1149
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 2 cut(s) 104, 822
EarI CTCTTC 2 cut(s) 104, 822
Eco32I GATATC 1 cut(s) 78
Eco47I GGWCC 3 cut(s) 275, 699, 1241
Eco57I CTGAAG 1 cut(s) 912
Eco91I GGTNACC 2 cut(s) 142, 317
EcoO65I GGTNACC 2 cut(s) 142, 317
EcoRII CCWGG 2 cut(s) 1089, 1237
EcoRV GATATC 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 8 cut(s) 31, 300, 386, 539, 544, 699, 712, 877
FaqI GGGAC 1 cut(s) 985
FatI CATG 8 cut(s) 27, 296, 382, 535, 540, 695, 708, 873
FauI CCCGC 1 cut(s) 962
FauNDI CATATG 1 cut(s) 599
FbaI TGATCA 1 cut(s) 1054
FblI GTMKAC 1 cut(s) 531
Fnu4HI GCNGC 4 cut(s) 173, 624, 863, 888
FokI GGATG 3 cut(s) 1034, 1140, 1141
FseI GGCCGGCC 1 cut(s) 346
Fsp4HI GCNGC 4 cut(s) 173, 624, 863, 888
FspBI CTAG 3 cut(s) 411, 714, 884
GluI GCNGC 4 cut(s) 173, 624, 863, 888
GsuI CTGGAG 1 cut(s) 97
HaeIII GGCC 3 cut(s) 342, 346, 1180
HgaI GACGC 1 cut(s) 126
Hin1II CATG 8 cut(s) 31, 300, 386, 539, 544, 699, 712, 877
HindIII AAGCTT 1 cut(s) 1109
HphI GGTGA 7 cut(s) 136, 311, 325, 470, 1006, 1114, 1172
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 3 cut(s) 75, 207, 924
Hpy188III TCNNGA 7 cut(s) 215, 383, 652, 677, 809, 935, 1063
Hpy8I GTNNAC 1 cut(s) 532
Hpy99I CGWCG 3 cut(s) 142, 485, 794
HpyCH4IV ACGT 4 cut(s) 400, 480, 559, 974
HpyCH4V TGCA 4 cut(s) 782, 865, 1202, 1225
HpyF10VI GCNNNNNNNGC 3 cut(s) 499, 854, 988
HpyF3I CTNAG 1 cut(s) 352
HpySE526I ACGT 4 cut(s) 400, 480, 559, 974
Hsp92II CATG 8 cut(s) 31, 300, 386, 539, 544, 699, 712, 877
KroI GCCGGC 1 cut(s) 342
KroNI GCCGGC 1 cut(s) 344
Ksp22I TGATCA 1 cut(s) 1054
Kzo9I GATC 7 cut(s) 202, 238, 258, 302, 729, 937, 1054
Lsp1109I GCAGC 2 cut(s) 849, 899
LweI GCATC 1 cut(s) 866
MaeI CTAG 3 cut(s) 411, 714, 884
MaeII ACGT 4 cut(s) 400, 480, 559, 974
MaeIII GTNAC 5 cut(s) 142, 317, 393, 458, 473
MalI GATC 7 cut(s) 204, 240, 260, 304, 731, 939, 1056
MboI GATC 7 cut(s) 202, 238, 258, 302, 729, 937, 1054
MboII GAAGA 9 cut(s) 91, 212, 413, 426, 527, 647, 839, 905, 1093
MflI RGATCY 2 cut(s) 202, 258
MluCI AATT 3 cut(s) 152, 325, 765
MlyI GAGTC 3 cut(s) 455, 678, 925
MmeI TCCRAC 1 cut(s) 618
MnlI CCTC 6 cut(s) 222, 390, 426, 828, 997, 1059
MroNI GCCGGC 1 cut(s) 342
MseI TTAA 2 cut(s) 756, 1017
MslI CAYNNNNRTG 4 cut(s) 39, 777, 1127, 1158
MspA1I CMGCKG 1 cut(s) 890
MspR9I CCNGG 4 cut(s) 1091, 1126, 1158, 1239
MvaI CCWGG 2 cut(s) 1091, 1239
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 3 cut(s) 499, 854, 988
NaeI GCCGGC 1 cut(s) 344
NciI CCSGG 2 cut(s) 1126, 1158
NdeI CATATG 1 cut(s) 599
NdeII GATC 7 cut(s) 202, 238, 258, 302, 729, 937, 1054
NgoMIV GCCGGC 1 cut(s) 342
NlaIII CATG 8 cut(s) 31, 300, 386, 539, 544, 699, 712, 877
NlaIV GGNNCC 1 cut(s) 260
NmuCI GTSAC 3 cut(s) 142, 317, 458
NspV TTCGAA 2 cut(s) 156, 633
PagI TCATGA 1 cut(s) 382
PdiI GCCGGC 1 cut(s) 344
PfeI GAWTC 7 cut(s) 31, 208, 266, 485, 638, 837, 1102
PflMI CCANNNNNTGG 2 cut(s) 541, 600
PinAI ACCGGT 2 cut(s) 520, 740
PkrI GCNGC 4 cut(s) 174, 625, 864, 889
PleI GAGTC 3 cut(s) 455, 678, 925
PpsI GAGTC 3 cut(s) 455, 678, 925
PsiI TTATAA 1 cut(s) 852
Psp1406I AACGTT 1 cut(s) 559
Psp6I CCWGG 2 cut(s) 1089, 1237
PspEI GGTNACC 2 cut(s) 142, 317
PspGI CCWGG 2 cut(s) 1089, 1237
PspN4I GGNNCC 1 cut(s) 260
PspPI GGNCC 3 cut(s) 275, 699, 1241
PsrI GAACNNNNNNTAC 2 cut(s) 1157, 1189
PsuI RGATCY 2 cut(s) 202, 258
PvuII CAGCTG 1 cut(s) 890
RigI GGCCGGCC 1 cut(s) 346
RsaI GTAC 5 cut(s) 189, 548, 1026, 1166, 1209
RsaNI GTAC 5 cut(s) 188, 547, 1025, 1165, 1208
RseI CAYNNNNRTG 4 cut(s) 39, 777, 1127, 1158
SaqAI TTAA 2 cut(s) 756, 1017
SatI GCNGC 4 cut(s) 173, 624, 863, 888
Sau3AI GATC 7 cut(s) 202, 238, 258, 302, 729, 937, 1054
Sau96I GGNCC 3 cut(s) 275, 699, 1241
SchI GAGTC 3 cut(s) 455, 678, 925
ScrFI CCNGG 4 cut(s) 1091, 1126, 1158, 1239
SfaNI GCATC 1 cut(s) 866
SfcI CTRYAG 1 cut(s) 1278
SfuI TTCGAA 2 cut(s) 156, 633
SinI GGWCC 3 cut(s) 275, 699, 1241
SmiMI CAYNNNNRTG 4 cut(s) 39, 777, 1127, 1158
SmlI CTYRAG 1 cut(s) 213
SmoI CTYRAG 1 cut(s) 213
Sse9I AATT 3 cut(s) 152, 325, 765
SsiI CCGC 8 cut(s) 66, 173, 300, 624, 657, 762, 969, 1070
SspMI CTAG 3 cut(s) 411, 714, 884
StyD4I CCNGG 4 cut(s) 1089, 1124, 1156, 1237
TaiI ACGT 4 cut(s) 403, 483, 562, 977
TaqI TCGA 8 cut(s) 156, 483, 633, 653, 687, 720, 840, 929
TaqII GACCGA 1 cut(s) 130
TasI AATT 3 cut(s) 152, 325, 765
TatI WGTACW 2 cut(s) 546, 1024
TauI GCSGC 2 cut(s) 175, 626
TfiI GAWTC 7 cut(s) 31, 208, 266, 485, 638, 837, 1102
Tru1I TTAA 2 cut(s) 756, 1017
Tru9I TTAA 2 cut(s) 756, 1017
TscAI CASTG 1 cut(s) 495
TseFI GTSAC 3 cut(s) 142, 317, 458
TseI GCWGC 2 cut(s) 862, 887
Tsp45I GTSAC 3 cut(s) 142, 317, 458
TspDTI ATGAA 4 cut(s) 17, 44, 91, 213
TspGWI ACGGA 2 cut(s) 83, 1233
TspRI CASTG 1 cut(s) 495
Van91I CCANNNNNTGG 2 cut(s) 541, 600
VpaK11BI GGWCC 3 cut(s) 275, 699, 1241
XapI RAATTY 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 531
XspI CTAG 3 cut(s) 411, 714, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.