Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010125

Physical Location & Seq

Genomic Coordinates Reverse (-)

7108884 .. 7112480

Gene Structure 3597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAGTTTCAATGCGGTGACATCACTTTTTGAGAAGTATAAGATTGACCCTAACCAAATCGGGCGTCTTGAAGTAGGAAGTGAGACTGTTATTGACAAAAGCAAGTCCATCAAGACCTTCTTGATGCAGCTCTTTGAGAAATGTGGAAACACTGATGTCGAAGGTGTTGACTCGACCAATGCTTGCTATGGTGGAACTGCAGCTTTGTTAAACTGTGTCAATTGGGTTGAGAGTAACTCTTGGGATGGACGTTATGGCCTCGTCATTTGTACTGACAGCGCGGTTTATGCAGAAGGACCCGCAAGGCCCACTGGAGGAGCTGCAGCGATTGCTATGTTGATAGGACCTGATGCTCCTATCGTTTTCGAAAGCAAATTGAGAGCAAGCCACATGGCTCATGTCTATGACTTTTACAAGCCCAATCTTGCTAGCGAGTACCCGGTTGTTGATGGTAAGCTTTCACAGACTTGCTACCTCATGGCTCTTGACTCCTGCTATAAACATTTATGCAACAAGTTCGAGAAGATCGAGGGCAAAGAGTTCTCCATAAATGATGCTGATTACATTGTTTTCCATTCTCCATACAATAAACTTGTACAGAAAAGCTTTGCTCGTCTCTTGTACAACGACTTCTTGAGAAACGCAAGCTCCATTGACGAGGCTGCCAAAGAAAAGTTCACCCCTTATTCATCTTTGACCCTTGACGAGAGTTACCAAAGCCGTGATCTTGAAAAGGTGTCACAACAAATTGCGAAACCGTTTTATGATGCTAAAGTGCAACCAACGACTTTAATACCAAAGGAAGTCGGTAACATGTACACTGCTTCTCTCTACGCTGCATTTGCTTCCCTCATCCACAAGAAACACAATGATTTGGCGGGAAAGCGGGTGGTTATGTTCTCTTATGGAAGTGGCTCAACCGCAACAATGTTCTCATTACGCCTCAACGACAATAAGCCTCCTTTCAGCATTTCAAACATTGCATCTGTAATGGATGTTGGCGGTAAATTGAAAGCTAGACATGAGTATGCACCTGAGAAGTTTGTGGAGACAATGAAGCTAATGGAACATAGGTATGGAGCAAAGGACTTTGTGACAACCAAGGAGGGTATTATAGATCTTTTGGCACCGGGAACTTATTATCTGAAAGAGGTTGATTCCTTGTACCGGAGATTCTATGGCAAGAAAGGTGAAGATGGATCTGTAGCCAATGGACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004421 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009506 GO:0009987 GO:0016740 GO:0016746 GO:0019287 GO:0019637 GO:0019693 GO:0030054 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046912 GO:0051186 GO:0055044 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:1901135 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00650 ko00900 ko01100 ko01110 ko01130 map00072 map00280 map00650 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

HMG_CoA_synt_C HMG_CoA_synt_N

Protein Analysis

406

Amino Acids

45.2

Weight (kDa)

6.76

Isoelectric Point (pI)

31.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_CoA_synt_N	PF01154	2 - 174	8.5e-79	Hydroxymethylglutaryl-coenzyme A synthase N terminal
HMG_CoA_synt_C	PF08540	175 - 451	7.8e-122	Hydroxymethylglutaryl-coenzyme A synthase C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11820 AT4G11820 AT4G11820
fragaria_vesca	FvH4_5g01350 FvH4_5g01350
malus_domestica	MD04G1069200.v1.1 MD06G1070000.v1.1
prunus_persica	Prupe.5G088900_v2.0.a1 Prupe.5G088900_v2.0.a1
pyrus_communis	pycom04g06300 pycom06g07050
rosa_chinensis	RchiOBHm_Chr7g0199551
rosa_laevigata	RLG00000003786
rosa_multiflora	Rmu_sc0007070.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256620
rosa_rugosa	Rorug07G0055300
rosa_samantha	Rh7AG180000 Rh7BG183200 Rh7CG189000 Rh7DG182700
rosa_wichuraiana	Rw7G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1126
AccII	CGCG	1 cut(s)	281
AciI	CCGC	7 cut(s)	14, 281, 300, 878, 886, 921, 1002
AclWI	GGATC	1 cut(s)	1207
AcyI	GRCGYC	1 cut(s)	64
AfaI	GTAC	6 cut(s)	271, 437, 597, 623, 818, 1166
AfiI	CCNNNNNNNGG	2 cut(s)	314, 1167
AflIII	ACRYGT	1 cut(s)	813
AgsI	TTSAA	5 cut(s)	10, 71, 731, 975, 1012
AjuI	GAANNNNNNNTTGG	2 cut(s)	659, 691
AluBI	AGCT	8 cut(s)	130, 203, 320, 457, 606, 648, 1016, 1060
AluI	AGCT	8 cut(s)	130, 203, 320, 457, 606, 648, 1016, 1060
Alw26I	GTCTC	3 cut(s)	77, 620, 1043
AlwI	GGATC	1 cut(s)	1207
AoxI	GGCC	2 cut(s)	256, 305
ApeKI	GCWGC	6 cut(s)	127, 200, 320, 323, 662, 836
ArsI	GACNNNNNNTTYG	2 cut(s)	49, 81
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	3 cut(s)	296, 306, 344
AsuC2I	CCSGG	2 cut(s)	440, 1131
AsuHPI	GGTGA	3 cut(s)	28, 670, 1202
AsuII	TTCGAA	1 cut(s)	366
AsuNHI	GCTAGC	1 cut(s)	428
AvaII	GGWCC	2 cut(s)	296, 344
BanI	GGYRCC	1 cut(s)	1126
BarI	GAAGNNNNNNTAC	2 cut(s)	614, 646
BbvI	GCAGC	6 cut(s)	139, 212, 307, 335, 649, 823
BccI	CCATC	4 cut(s)	116, 239, 443, 1190
BceAI	ACGGC	1 cut(s)	705
BcgI	CGANNNNNNTGC	2 cut(s)	499, 533
BcnI	CCSGG	2 cut(s)	440, 1131
BcoDI	GTCTC	3 cut(s)	77, 620, 1043
BfaI	CTAG	2 cut(s)	429, 1017
BfmI	CTRYAG	3 cut(s)	198, 321, 1203
BglII	AGATCT	1 cut(s)	1117
BisI	GCNGC	6 cut(s)	128, 201, 321, 324, 663, 837
BlsI	GCNGC	6 cut(s)	129, 202, 322, 325, 664, 838
Bme1390I	CCNGG	2 cut(s)	440, 1131
Bme18I	GGWCC	2 cut(s)	296, 344
BmgT120I	GGNCC	3 cut(s)	296, 306, 344
BmiI	GGNNCC	2 cut(s)	298, 1128
BmrFI	CCNGG	2 cut(s)	440, 1131
BmsI	GCATC	5 cut(s)	114, 340, 544, 757, 992
BmtI	GCTAGC	1 cut(s)	432
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BpmI	CTGGAG	1 cut(s)	333
Bpu14I	TTCGAA	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	655
BpuMI	CCSGG	2 cut(s)	440, 1131
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	1101
BsaWI	WCCGGW	1 cut(s)	1167
BsaXI	ACNNNNNCTCC	2 cut(s)	632, 662
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 1167
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	978
BseDI	CCNNGG	1 cut(s)	1101
BseGI	GGATG	3 cut(s)	250, 852, 1000
BseLI	CCNNNNNNNGG	2 cut(s)	314, 1167
BseMI	GCAATG	1 cut(s)	978
BseMII	CTCAG	1 cut(s)	1026
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	6 cut(s)	139, 212, 307, 335, 649, 823
Bsh1236I	CGCG	1 cut(s)	281
BshFI	GGCC	2 cut(s)	258, 307
BshNI	GGYRCC	1 cut(s)	1126
BsiSI	CCGG	3 cut(s)	440, 1130, 1168
BslI	CCNNNNNNNGG	2 cut(s)	314, 1167
BsmAI	GTCTC	3 cut(s)	77, 620, 1043
BsmBI	CGTCTC	1 cut(s)	620
BsnI	GGCC	2 cut(s)	258, 307
Bsp119I	TTCGAA	1 cut(s)	366
Bsp1407I	TGTACA	3 cut(s)	595, 621, 816
Bsp143I	GATC	4 cut(s)	525, 724, 1117, 1199
BspACI	CCGC	7 cut(s)	14, 281, 300, 878, 886, 921, 1002
BspANI	GGCC	2 cut(s)	258, 307
BspCNI	CTCAG	1 cut(s)	1027
BspFNI	CGCG	1 cut(s)	281
BspLI	GGNNCC	2 cut(s)	298, 1128
BspMAI	CTGCAG	2 cut(s)	202, 325
BspOI	GCTAGC	1 cut(s)	432
BspPI	GGATC	1 cut(s)	1207
BspT104I	TTCGAA	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	1126
BsrDI	GCAATG	1 cut(s)	978
BsrGI	TGTACA	3 cut(s)	595, 621, 816
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	1101
BssMI	GATC	4 cut(s)	525, 724, 1117, 1199
BssNI	GRCGYC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	1101
Bst4CI	ACNGT	3 cut(s)	88, 215, 759
BstACI	GRCGYC	1 cut(s)	64
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstAUI	TGTACA	3 cut(s)	595, 621, 816
BstBI	TTCGAA	1 cut(s)	366
BstC8I	GCNNGC	4 cut(s)	184, 385, 430, 646
BstDEI	CTNAG	1 cut(s)	1035
BstF5I	GGATG	3 cut(s)	250, 852, 1000
BstFNI	CGCG	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	4 cut(s)	528, 727, 1120, 1202
BstMAI	GTCTC	3 cut(s)	77, 620, 1043
BstMBI	GATC	4 cut(s)	525, 724, 1117, 1199
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 329, 842
BstNSI	RCATGY	1 cut(s)	817
BstSCI	CCNGG	2 cut(s)	438, 1129
BstSFI	CTRYAG	3 cut(s)	198, 321, 1203
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	6 cut(s)	139, 212, 307, 335, 649, 823
BstX2I	RGATCY	2 cut(s)	1117, 1199
BstYI	RGATCY	2 cut(s)	1117, 1199
BsuRI	GGCC	2 cut(s)	258, 307
BtsCI	GGATG	3 cut(s)	250, 852, 1000
BtsI	GCAGTG	1 cut(s)	819
BtsIMutI	CAGTG	4 cut(s)	150, 309, 819, 1216
Cac8I	GCNNGC	4 cut(s)	184, 385, 430, 646
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	3 cut(s)	296, 306, 344
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	6 cut(s)	270, 436, 596, 622, 817, 1165
CviAII	CATG	5 cut(s)	391, 398, 478, 814, 1022
CviQI	GTAC	6 cut(s)	270, 436, 596, 622, 817, 1165
DdeI	CTNAG	1 cut(s)	1035
DpnI	GATC	4 cut(s)	527, 726, 1119, 1201
DpnII	GATC	4 cut(s)	525, 724, 1117, 1199
Eco130I	CCWWGG	1 cut(s)	1101
Eco47I	GGWCC	2 cut(s)	296, 344
EcoO109I	RGGNCCY	2 cut(s)	296, 344
EcoT14I	CCWWGG	1 cut(s)	1101
ErhI	CCWWGG	1 cut(s)	1101
Esp3I	CGTCTC	1 cut(s)	620
FaeI	CATG	5 cut(s)	394, 401, 481, 817, 1025
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	5 cut(s)	390, 397, 477, 813, 1021
FauI	CCCGC	3 cut(s)	307, 871, 879
Fnu4HI	GCNGC	6 cut(s)	128, 201, 321, 324, 663, 837
FokI	GGATG	3 cut(s)	257, 839, 1007
Fsp4HI	GCNGC	6 cut(s)	128, 201, 321, 324, 663, 837
FspBI	CTAG	2 cut(s)	429, 1017
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	6 cut(s)	128, 201, 321, 324, 663, 837
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	258, 307
HapII	CCGG	3 cut(s)	440, 1130, 1168
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	281
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	5 cut(s)	394, 401, 481, 817, 1025
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	2 cut(s)	455, 604
HinfI	GANTC	4 cut(s)	170, 488, 1157, 1173
HpaII	CCGG	3 cut(s)	440, 1130, 1168
HphI	GGTGA	3 cut(s)	28, 670, 1202
Hpy166II	GTNNAC	3 cut(s)	169, 678, 819
Hpy188I	TCNGA	1 cut(s)	1146
Hpy188III	TCNNGA	7 cut(s)	68, 112, 121, 485, 520, 634, 728
Hpy8I	GTNNAC	3 cut(s)	169, 678, 819
HpyAV	CCTTC	3 cut(s)	127, 155, 287
HpyCH4III	ACNGT	3 cut(s)	88, 215, 759
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	9 cut(s)	127, 200, 290, 323, 510, 778, 839, 983, 1031
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 329, 842
HpyF3I	CTNAG	1 cut(s)	1035
HpySE526I	ACGT	1 cut(s)	250
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	5 cut(s)	394, 401, 481, 817, 1025
HspAI	GCGC	1 cut(s)	279
Kzo9I	GATC	4 cut(s)	525, 724, 1117, 1199
LmnI	GCTCC	4 cut(s)	317, 358, 653, 1079
LpnPI	CCDG	7 cut(s)	297, 360, 453, 505, 1047, 1143, 1181
Lsp1109I	GCAGC	6 cut(s)	139, 212, 307, 335, 649, 823
LweI	GCATC	5 cut(s)	114, 340, 544, 757, 992
MaeI	CTAG	2 cut(s)	429, 1017
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	6 cut(s)	16, 233, 710, 738, 809, 1093
MalI	GATC	4 cut(s)	527, 726, 1119, 1201
MboI	GATC	4 cut(s)	525, 724, 1117, 1199
MboII	GAAGA	2 cut(s)	535, 1205
MfeI	CAATTG	1 cut(s)	220
MflI	RGATCY	2 cut(s)	1117, 1199
MluCI	AATT	4 cut(s)	220, 374, 747, 1007
MlyI	GAGTC	2 cut(s)	164, 482
MseI	TTAA	2 cut(s)	209, 791
MslI	CAYNNNNRTG	3 cut(s)	402, 1026, 1074
MspI	CCGG	3 cut(s)	440, 1130, 1168
MspR9I	CCNGG	2 cut(s)	440, 1131
MunI	CAATTG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	3 cut(s)	287, 329, 842
NciI	CCSGG	2 cut(s)	440, 1131
NdeII	GATC	4 cut(s)	525, 724, 1117, 1199
NheI	GCTAGC	1 cut(s)	428
NlaIII	CATG	5 cut(s)	394, 401, 481, 817, 1025
NlaIV	GGNNCC	2 cut(s)	298, 1128
NmuCI	GTSAC	3 cut(s)	16, 738, 1093
NspI	RCATGY	1 cut(s)	817
NspV	TTCGAA	1 cut(s)	366
PciI	ACATGT	1 cut(s)	813
PcsI	WCGNNNNNNNCGW	1 cut(s)	525
PfeI	GAWTC	2 cut(s)	1157, 1173
PkrI	GCNGC	6 cut(s)	129, 202, 322, 325, 664, 838
PleI	GAGTC	2 cut(s)	164, 482
PpsI	GAGTC	2 cut(s)	164, 482
PpuMI	RGGWCCY	2 cut(s)	296, 344
PscI	ACATGT	1 cut(s)	813
Psp5II	RGGWCCY	2 cut(s)	296, 344
PspN4I	GGNNCC	2 cut(s)	298, 1128
PspPI	GGNCC	3 cut(s)	296, 306, 344
PspPPI	RGGWCCY	2 cut(s)	296, 344
PstI	CTGCAG	2 cut(s)	202, 325
PsuI	RGATCY	2 cut(s)	1117, 1199
RsaI	GTAC	6 cut(s)	271, 437, 597, 623, 818, 1166
RsaNI	GTAC	6 cut(s)	270, 436, 596, 622, 817, 1165
RseI	CAYNNNNRTG	3 cut(s)	402, 1026, 1074
SaqAI	TTAA	2 cut(s)	209, 791
SatI	GCNGC	6 cut(s)	128, 201, 321, 324, 663, 837
Sau3AI	GATC	4 cut(s)	525, 724, 1117, 1199
Sau96I	GGNCC	3 cut(s)	296, 306, 344
SchI	GAGTC	2 cut(s)	164, 482
ScrFI	CCNGG	2 cut(s)	440, 1131
SfaNI	GCATC	5 cut(s)	114, 340, 544, 757, 992
SfcI	CTRYAG	3 cut(s)	198, 321, 1203
SfuI	TTCGAA	1 cut(s)	366
SinI	GGWCC	2 cut(s)	296, 344
SmiMI	CAYNNNNRTG	3 cut(s)	402, 1026, 1074
SmlI	CTYRAG	1 cut(s)	634
SmoI	CTYRAG	1 cut(s)	634
Sse9I	AATT	4 cut(s)	220, 374, 747, 1007
SsiI	CCGC	7 cut(s)	14, 281, 300, 878, 886, 921, 1002
SspMI	CTAG	2 cut(s)	429, 1017
StyD4I	CCNGG	2 cut(s)	438, 1129
StyI	CCWWGG	1 cut(s)	1101
TaaI	ACNGT	3 cut(s)	88, 215, 759
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	5 cut(s)	159, 173, 366, 519, 528
TasI	AATT	4 cut(s)	220, 374, 747, 1007
TatI	WGTACW	4 cut(s)	269, 595, 621, 816
TfiI	GAWTC	2 cut(s)	1157, 1173
Tru1I	TTAA	2 cut(s)	209, 791
Tru9I	TTAA	2 cut(s)	209, 791
TscAI	CASTG	3 cut(s)	157, 316, 826
TseFI	GTSAC	3 cut(s)	16, 738, 1093
TseI	GCWGC	6 cut(s)	127, 200, 320, 323, 662, 836
Tsp45I	GTSAC	3 cut(s)	16, 738, 1093
TspDTI	ATGAA	2 cut(s)	678, 1070
TspRI	CASTG	3 cut(s)	157, 316, 826
VpaK11BI	GGWCC	2 cut(s)	296, 344
XceI	RCATGY	1 cut(s)	817
XspI	CTAG	2 cut(s)	429, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.