Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015819

Physical Location & Seq

Genomic Coordinates Reverse (-)

7219652 .. 7222166

Gene Structure 2515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G12050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGATCCAGTTCAATCTCATGGATCACAAAGCTCTCTTCCTCCTCCTTTCCATGCTAGAGATTTCCAATTACATCTTCAACAACAACAACAACATCAACAACAACATCAACAACAACAACAACAACAGTTCTTTCTCCACCATCATCAGCAACCACAAAGAAACCTTGATCAAGATCACGAGCAGCAAGGAGGGTCAATATTGAATAGATCTATCAAGATGGATCGCGAAGAGACAAGCGATAACATGGACAACATCGCTAATACCAACAGCGGTAGCGAAGGTAAAGAGATGAGTTTACACGGAGGAGAAGGAGGAAGCGGTGGTGGAGGAAGTGGAGAACAGATGACAAGAAGGCCAAGAGGAAGACCAGCAGGATCCAAGAACAAACCTAAAGCTCCAATAATCATAACAAGAGACAGCGCAAACGCGCTTCGAACTCACGTCATGGAGATAGGAGACGGATGTGACATAGTTGACTGTATGGCTACGTTCGCTAGACGCCGCCAAAGAGGCGTTTGCGTTATGAGCGGTACAGGAAGCGTTACTAACGTCACTATACGTCAGCCTGGATCGCCACCTGGCTCGGTGGTTAGCCTTCACGGCCGGTTTGAAATCCTCTCTCTTTCGGGATCTTTCTTGCCTCCGCCTGCGCCGCCTGCAGCCACCGGACTAAGCGTTTACCTAGCCGGAGGACAAGGGCAGGTCGTTGGAGGTAGTGTGGTGGGACCTTTGTTGTGTTCGGGTCCTGTGGTGGTTATGGCGGCTTCTTTTAGCAATGCGGCGTACGAAAGGCTGCCTTTGGAAGAAGATGAGATGCAGACGCCAGTTCAAGGAGGCGGTGGAGGAGGAGGAGGTGGTGGTGGAATGGGATCTCCCCCGATGATGGGACAGCAACAAGCTATGGCAGCTATGGCGGCGGCTCAAGGACTACCACCGAATCTTCTTGGTTCGGTTCAGTTGCCACCGCCACAACAGAATGATCAGCAGTATTGGTCTACGGGTCGGCCACCGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019899 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

339

Amino Acids

35.78

Weight (kDa)

6.45

Isoelectric Point (pI)

67.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	146 - 259	1.5e-23	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12050 AT4G22810
fragaria_vesca	FvH4_5g00910
malus_domestica	MD04G1077100.v1.1 MD06G1067800.v1.1
prunus_persica	Prupe.5G082200_v2.0.a1
pyrus_communis	pycom04g06790 pycom06g06490
rosa_chinensis	RchiOBHm_Chr7g0200471
rosa_laevigata	RLG00000003723
rosa_multiflora	Rmu_sc0000617.1_g000026
rosa_rugosa	Rorug07G0060400
rosa_samantha	Rh7AG186000 Rh7DG190100
rosa_wichuraiana	Rw7G016310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	694
AccBSI	CCGCTC	1 cut(s)	531
AccI	GTMKAC	1 cut(s)	998
AccII	CGCG	2 cut(s)	228, 431
AclWI	GGATC	8 cut(s)	12, 31, 231, 372, 385, 580, 640, 880
AcoI	YGGCCR	2 cut(s)	604, 1007
AcyI	GRCGYC	2 cut(s)	502, 824
AfaI	GTAC	2 cut(s)	535, 788
AfiI	CCNNNNNNNGG	3 cut(s)	833, 886, 887
AgsI	TTSAA	5 cut(s)	14, 80, 205, 614, 833
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	2 cut(s)	568, 580
AjuI	GAANNNNNNNTTGG	2 cut(s)	60, 92
AluBI	AGCT	4 cut(s)	33, 398, 902, 911
AluI	AGCT	4 cut(s)	33, 398, 902, 911
Alw26I	GTCTC	3 cut(s)	227, 411, 453
AlwI	GGATC	8 cut(s)	12, 31, 231, 372, 385, 580, 640, 880
AoxI	GGCC	3 cut(s)	356, 604, 1007
ApeKI	GCWGC	4 cut(s)	184, 662, 796, 908
AspLEI	GCGC	3 cut(s)	425, 433, 655
AspS9I	GGNCC	2 cut(s)	728, 746
AsuII	TTCGAA	1 cut(s)	436
AvaII	GGWCC	2 cut(s)	728, 746
BamHI	GGATCC	2 cut(s)	4, 377
BauI	CACGAG	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	373
BbvI	GCAGC	4 cut(s)	196, 674, 783, 920
BccI	CCATC	3 cut(s)	150, 214, 880
BceAI	ACGGC	1 cut(s)	619
BciT130I	CCWGG	2 cut(s)	570, 582
BclI	TGATCA	2 cut(s)	169, 982
BcoDI	GTCTC	3 cut(s)	227, 411, 453
BfaI	CTAG	3 cut(s)	57, 498, 686
BfmI	CTRYAG	1 cut(s)	660
BfuAI	ACCTGC	1 cut(s)	694
BglI	GCCNNNNNGGC	2 cut(s)	513, 603
BglII	AGATCT	1 cut(s)	209
Bme1390I	CCNGG	2 cut(s)	570, 582
Bme18I	GGWCC	2 cut(s)	728, 746
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	2 cut(s)	728, 746
BmiI	GGNNCC	4 cut(s)	6, 379, 729, 747
BmrFI	CCNGG	2 cut(s)	570, 582
BmsI	GCATC	1 cut(s)	807
BpiI	GAAGAC	1 cut(s)	373
Bpu14I	TTCGAA	1 cut(s)	436
BpuEI	CTTGAG	1 cut(s)	909
BsaBI	GATNNNNATC	1 cut(s)	174
BsaHI	GRCGYC	2 cut(s)	502, 824
BsaWI	WCCGGW	1 cut(s)	668
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	3 cut(s)	833, 886, 887
Bse118I	RCCGGY	1 cut(s)	606
Bse1I	ACTGG	2 cut(s)	8, 827
Bse3DI	GCAATG	1 cut(s)	784
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	570, 582
BseGI	GGATG	1 cut(s)	470
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	3 cut(s)	833, 886, 887
BseMI	GCAATG	1 cut(s)	784
BseNI	ACTGG	2 cut(s)	8, 827
BseRI	GAGGAG	5 cut(s)	33, 321, 861, 864, 867
BseX3I	CGGCCG	1 cut(s)	604
BseXI	GCAGC	4 cut(s)	196, 674, 783, 920
Bsh1236I	CGCG	2 cut(s)	228, 431
Bsh1285I	CGRYCG	1 cut(s)	607
BshFI	GGCC	3 cut(s)	358, 606, 1009
BsiEI	CGRYCG	1 cut(s)	607
BsiSI	CCGG	3 cut(s)	607, 669, 690
BsiWI	CGTACG	1 cut(s)	786
BslFI	GGGAC	2 cut(s)	741, 903
BslI	CCNNNNNNNGG	3 cut(s)	833, 886, 887
BsmAI	GTCTC	3 cut(s)	227, 411, 453
BsmBI	CGTCTC	1 cut(s)	453
BsmFI	GGGAC	2 cut(s)	741, 903
BsnI	GGCC	3 cut(s)	358, 606, 1009
Bsp119I	TTCGAA	1 cut(s)	436
Bsp68I	TCGCGA	1 cut(s)	228
BspANI	GGCC	3 cut(s)	358, 606, 1009
BspFNI	CGCG	2 cut(s)	228, 431
BspLI	GGNNCC	4 cut(s)	6, 379, 729, 747
BspMAI	CTGCAG	1 cut(s)	664
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	8 cut(s)	12, 31, 231, 372, 385, 580, 640, 880
BspT104I	TTCGAA	1 cut(s)	436
BsrBI	CCGCTC	1 cut(s)	531
BsrDI	GCAATG	1 cut(s)	784
BsrFI	RCCGGY	1 cut(s)	606
BsrI	ACTGG	2 cut(s)	8, 827
BssAI	RCCGGY	1 cut(s)	606
BssNI	GRCGYC	2 cut(s)	502, 824
BssSI	CACGAG	1 cut(s)	179
Bst2BI	CACGAG	1 cut(s)	179
Bst2UI	CCWGG	2 cut(s)	570, 582
Bst4CI	ACNGT	3 cut(s)	129, 482, 1014
Bst6I	CTCTTC	2 cut(s)	42, 225
BstACI	GRCGYC	2 cut(s)	502, 824
BstBI	TTCGAA	1 cut(s)	436
BstC8I	GCNNGC	2 cut(s)	651, 660
BstDEI	CTNAG	1 cut(s)	674
BstF5I	GGATG	1 cut(s)	470
BstFNI	CGCG	2 cut(s)	228, 431
BstHHI	GCGC	3 cut(s)	425, 433, 655
BstMAI	GTCTC	3 cut(s)	227, 411, 453
BstMCI	CGRYCG	1 cut(s)	607
BstNI	CCWGG	2 cut(s)	570, 582
BstSCI	CCNGG	2 cut(s)	568, 580
BstSFI	CTRYAG	1 cut(s)	660
BstUI	CGCG	2 cut(s)	228, 431
BstV1I	GCAGC	4 cut(s)	196, 674, 783, 920
BstV2I	GAAGAC	1 cut(s)	373
BstX2I	RGATCY	5 cut(s)	4, 209, 377, 632, 872
BstYI	RGATCY	5 cut(s)	4, 209, 377, 632, 872
BstZI	CGGCCG	1 cut(s)	604
BsuRI	GGCC	3 cut(s)	358, 606, 1009
BtgZI	GCGATG	1 cut(s)	241
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	1 cut(s)	470
BtuMI	TCGCGA	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	2 cut(s)	651, 660
CfoI	GCGC	3 cut(s)	425, 433, 655
Cfr10I	RCCGGY	1 cut(s)	606
Cfr13I	GGNCC	2 cut(s)	728, 746
CseI	GACGC	2 cut(s)	510, 832
Csp6I	GTAC	2 cut(s)	534, 787
CviAII	CATG	4 cut(s)	20, 53, 247, 448
CviQI	GTAC	2 cut(s)	534, 787
DdeI	CTNAG	1 cut(s)	674
EaeI	YGGCCR	2 cut(s)	604, 1007
EagI	CGGCCG	1 cut(s)	604
Eam1104I	CTCTTC	2 cut(s)	42, 225
EarI	CTCTTC	2 cut(s)	42, 225
EciI	GGCGGA	1 cut(s)	636
EclXI	CGGCCG	1 cut(s)	604
Eco47I	GGWCC	2 cut(s)	728, 746
Eco52I	CGGCCG	1 cut(s)	604
EcoO109I	RGGNCCY	2 cut(s)	728, 746
EcoRII	CCWGG	2 cut(s)	568, 580
Esp3I	CGTCTC	1 cut(s)	453
FaeI	CATG	4 cut(s)	23, 56, 250, 451
FalI	AAGNNNNNCTT	2 cut(s)	784, 816
FaqI	GGGAC	2 cut(s)	741, 903
FatI	CATG	4 cut(s)	19, 52, 246, 447
FbaI	TGATCA	2 cut(s)	169, 982
FblI	GTMKAC	1 cut(s)	998
FokI	GGATG	1 cut(s)	477
FspBI	CTAG	3 cut(s)	57, 498, 686
GlaI	GCGC	3 cut(s)	424, 432, 654
HaeIII	GGCC	3 cut(s)	358, 606, 1009
HapII	CCGG	3 cut(s)	607, 669, 690
HgaI	GACGC	2 cut(s)	510, 832
HhaI	GCGC	3 cut(s)	425, 433, 655
Hin1I	GRCGYC	2 cut(s)	502, 824
Hin1II	CATG	4 cut(s)	23, 56, 250, 451
Hin6I	GCGC	3 cut(s)	423, 431, 653
HinP1I	GCGC	3 cut(s)	423, 431, 653
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	1 cut(s)	940
HpaII	CCGG	3 cut(s)	607, 669, 690
Hpy166II	GTNNAC	4 cut(s)	299, 478, 682, 999
Hpy188III	TCNNGA	5 cut(s)	173, 179, 217, 227, 630
Hpy8I	GTNNAC	4 cut(s)	299, 478, 682, 999
HpyAV	CCTTC	4 cut(s)	275, 305, 348, 608
HpyCH4III	ACNGT	3 cut(s)	129, 482, 1014
HpyCH4IV	ACGT	4 cut(s)	444, 491, 552, 562
HpyCH4V	TGCA	2 cut(s)	662, 820
HpyF3I	CTNAG	1 cut(s)	674
HpySE526I	ACGT	4 cut(s)	444, 491, 552, 562
Hsp92I	GRCGYC	2 cut(s)	502, 824
Hsp92II	CATG	4 cut(s)	23, 56, 250, 451
HspAI	GCGC	3 cut(s)	423, 431, 653
Ksp22I	TGATCA	2 cut(s)	169, 982
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	4 cut(s)	196, 674, 783, 920
LweI	GCATC	1 cut(s)	807
MaeI	CTAG	3 cut(s)	57, 498, 686
MaeII	ACGT	4 cut(s)	444, 491, 552, 562
MaeIII	GTNAC	3 cut(s)	467, 544, 553
MbiI	CCGCTC	1 cut(s)	531
MboII	GAAGA	7 cut(s)	29, 68, 242, 378, 818, 821, 935
MflI	RGATCY	5 cut(s)	4, 209, 377, 632, 872
MluCI	AATT	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	691
MspA1I	CMGCKG	1 cut(s)	273
MspI	CCGG	3 cut(s)	607, 669, 690
MspR9I	CCNGG	2 cut(s)	570, 582
MvaI	CCWGG	2 cut(s)	570, 582
MvnI	CGCG	2 cut(s)	228, 431
NlaIII	CATG	4 cut(s)	23, 56, 250, 451
NlaIV	GGNNCC	4 cut(s)	6, 379, 729, 747
NmuCI	GTSAC	2 cut(s)	467, 553
NruI	TCGCGA	1 cut(s)	228
NspV	TTCGAA	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	940
Pfl23II	CGTACG	1 cut(s)	786
PpuMI	RGGWCCY	2 cut(s)	728, 746
Psp5II	RGGWCCY	2 cut(s)	728, 746
Psp6I	CCWGG	2 cut(s)	568, 580
PspGI	CCWGG	2 cut(s)	568, 580
PspLI	CGTACG	1 cut(s)	786
PspN4I	GGNNCC	4 cut(s)	6, 379, 729, 747
PspPI	GGNCC	2 cut(s)	728, 746
PspPPI	RGGWCCY	2 cut(s)	728, 746
PstI	CTGCAG	1 cut(s)	664
PsuI	RGATCY	5 cut(s)	4, 209, 377, 632, 872
RruI	TCGCGA	1 cut(s)	228
RsaI	GTAC	2 cut(s)	535, 788
RsaNI	GTAC	2 cut(s)	534, 787
Sau96I	GGNCC	2 cut(s)	728, 746
ScrFI	CCNGG	2 cut(s)	570, 582
SfaNI	GCATC	1 cut(s)	807
SfcI	CTRYAG	1 cut(s)	660
SfuI	TTCGAA	1 cut(s)	436
SinI	GGWCC	2 cut(s)	728, 746
SmlI	CTYRAG	1 cut(s)	924
SmoI	CTYRAG	1 cut(s)	924
Sse9I	AATT	1 cut(s)	68
SspI	AATATT	1 cut(s)	201
SspMI	CTAG	3 cut(s)	57, 498, 686
StyD4I	CCNGG	2 cut(s)	568, 580
TaaI	ACNGT	3 cut(s)	129, 482, 1014
TaiI	ACGT	4 cut(s)	447, 494, 555, 565
TaqI	TCGA	1 cut(s)	436
TasI	AATT	1 cut(s)	68
TauI	GCSGC	6 cut(s)	507, 658, 767, 785, 920, 923
TfiI	GAWTC	1 cut(s)	940
TseFI	GTSAC	2 cut(s)	467, 553
TseI	GCWGC	4 cut(s)	184, 662, 796, 908
Tsp45I	GTSAC	2 cut(s)	467, 553
TspGWI	ACGGA	2 cut(s)	318, 477
VpaK11BI	GGWCC	2 cut(s)	728, 746
XmiI	GTMKAC	1 cut(s)	998
XspI	CTAG	3 cut(s)	57, 498, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.