Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015819

Physical Location & Seq

Genomic Coordinates Forward (+)

9555987 .. 9557995

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G082200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGACACCCATTCTCTCCCTCCTCCTTTCCATACAAGAGATTTCCACCTGCAGCATCATCCCCAGTTCCACCACCAGCAGCAGCAGAATTCGGAAGACGAGCAAACCGGCAGCAGCGGCCTCAACAACAAGGGCCAGAAAAGAGAGCGAGATATCGACAATGACAGCGGCGGCAATGGCGGCGATTTAGGCAAAGAACTCAATGTCACCATCTCCGGCGGTGATGGATCAGAAATGACCCGAAGACCCCGAGGAAGACCCGCCGGATCCAAGAACAAGCCCAAGCCCCCCATCATCATCACCCGCGACAGCGCCAATGCGCTCCGCACCCACGTCATGGAGGTTGCCGACGGCTGCGACATAGTGGAGAGTGTTGCCACCTTTGCTCGCAGGCGCCAGAGAGGCGTCTGCATTATGAGCGGGACGGGCACCGTCACGAATGTGACAATCAGACAGCCCGCCTCTCCCGGGTCCATCGTGACTTTACATGGCCGATTCGAGATCTTGTCACTGGCCGGGTCTTTTCTACCTCCGCCAGCCCCGCCTGCCGCGACGGGGTTGACCATATATCTGGCAGGCGGGGGCGGGCAAGTTGTAGGTGGAAGCGTTGTTGGTACGCTAATTGCGTCCGGGCCTGTTGTGATCATGGCGGCTTCGTTTAGCAACGCGGCGTATGAGCGGCTTCCTCTGGAGGAAGACGAGGGTCAGCTGCCAATGCAAGGCGGCGGCGGCGGTAGCCTTGGCTCTCCAAGCGGAGTTGGTCATCAGCAACAGCAGCAGCATCAACAGCAACAACAACAGCAACAACTTTTGGCTGAAGCTGCAAATACAAATGCTCCTCTTTTTCATGGTTTACCTCCCAATCTCCTGAATTCCATGCAATTGCCAGCTGAGGCGGCCTACTGGGCTACCGGCCGCCCACCATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

310

Amino Acids

32.65

Weight (kDa)

6.45

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12050 AT4G22810
fragaria_vesca	FvH4_5g00910
malus_domestica	MD04G1077100.v1.1 MD06G1067800.v1.1
prunus_persica	Prupe.5G082200_v2.0.a1
pyrus_communis	pycom04g06790 pycom06g06490
rosa_chinensis	RchiOBHm_Chr7g0200471
rosa_laevigata	RLG00000003723
rosa_multiflora	Rmu_sc0000617.1_g000026
rosa_rugosa	Rorug07G0060400
rosa_samantha	Rh7AG186000 Rh7DG190100
rosa_wichuraiana	Rw7G016310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	57
Acc36I	ACCTGC	1 cut(s)	57
AccB1I	GGYRCC	2 cut(s)	393, 428
AccB7I	CCANNNNNTGG	1 cut(s)	337
AccBSI	CCGCTC	2 cut(s)	420, 679
AccII	CGCG	3 cut(s)	306, 551, 668
AclWI	GGATC	3 cut(s)	235, 261, 274
AcoI	YGGCCR	3 cut(s)	490, 513, 913
AcsI	RAATTY	2 cut(s)	88, 871
AcuI	CTGAAG	1 cut(s)	837
AcyI	GRCGYC	2 cut(s)	394, 405
AfaI	GTAC	1 cut(s)	616
AfiI	CCNNNNNNNGG	4 cut(s)	337, 468, 555, 719
AjiI	CACGTC	1 cut(s)	334
AleI	CACNNNNGTG	1 cut(s)	440
AluBI	AGCT	3 cut(s)	709, 821, 890
AluI	AGCT	3 cut(s)	709, 821, 890
AlwI	GGATC	3 cut(s)	235, 261, 274
Ama87I	CYCGRG	2 cut(s)	249, 467
AoxI	GGCC	7 cut(s)	118, 133, 490, 513, 632, 897, 913
ApoI	RAATTY	2 cut(s)	88, 871
AspLEI	GCGC	3 cut(s)	314, 322, 396
AspS9I	GGNCC	3 cut(s)	133, 471, 632
AsuC2I	CCSGG	4 cut(s)	468, 469, 517, 631
AsuHPI	GGTGA	3 cut(s)	199, 233, 292
AvaI	CYCGRG	2 cut(s)	249, 467
AvaII	GGWCC	1 cut(s)	471
BaeGI	GKGCMC	1 cut(s)	431
BamHI	GGATCC	1 cut(s)	266
BanI	GGYRCC	2 cut(s)	393, 428
BbsI	GAAGAC	4 cut(s)	102, 250, 262, 702
BbvCI	CCTCAGC	1 cut(s)	891
BccI	CCATC	4 cut(s)	218, 218, 299, 482
BceAI	ACGGC	1 cut(s)	367
BclI	TGATCA	1 cut(s)	642
BcnI	CCSGG	4 cut(s)	468, 469, 517, 631
BfmI	CTRYAG	1 cut(s)	50
BfoI	RGCGCY	2 cut(s)	315, 397
BfuAI	ACCTGC	1 cut(s)	57
BglI	GCCNNNNNGGC	2 cut(s)	402, 905
BglII	AGATCT	1 cut(s)	501
Bme1390I	CCNGG	4 cut(s)	468, 469, 517, 631
Bme18I	GGWCC	1 cut(s)	471
BmeT110I	CYCGRG	2 cut(s)	249, 467
BmgBI	CACGTC	1 cut(s)	334
BmgT120I	GGNCC	3 cut(s)	133, 471, 632
BmiI	GGNNCC	4 cut(s)	268, 395, 430, 472
BmrFI	CCNGG	4 cut(s)	468, 469, 517, 631
BmrI	ACTGGG	2 cut(s)	58, 913
BmsI	GCATC	2 cut(s)	64, 790
BmuI	ACTGGG	2 cut(s)	58, 913
BoxI	GACNNNNGTC	1 cut(s)	702
BpiI	GAAGAC	4 cut(s)	102, 250, 262, 702
BpmI	CTGGAG	1 cut(s)	710
Bpu10I	CCTNAGC	1 cut(s)	891
BpuMI	CCSGG	4 cut(s)	468, 469, 517, 631
BsaHI	GRCGYC	2 cut(s)	394, 405
BsaJI	CCNNGG	3 cut(s)	250, 467, 739
BsaXI	ACNNNNNCTCC	2 cut(s)	820, 850
Bsc4I	CCNNNNNNNGG	4 cut(s)	337, 468, 555, 719
Bse118I	RCCGGY	2 cut(s)	107, 911
Bse1I	ACTGG	3 cut(s)	64, 516, 908
Bse3DI	GCAATG	1 cut(s)	181
BseDI	CCNNGG	3 cut(s)	250, 467, 739
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	4 cut(s)	337, 468, 555, 719
BseMI	GCAATG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	882
BseNI	ACTGG	3 cut(s)	64, 516, 908
BseRI	GAGGAG	2 cut(s)	12, 828
BseSI	GKGCMC	1 cut(s)	431
BseX3I	CGGCCG	1 cut(s)	913
Bsh1236I	CGCG	3 cut(s)	306, 551, 668
Bsh1285I	CGRYCG	1 cut(s)	916
BshFI	GGCC	7 cut(s)	120, 135, 492, 515, 634, 899, 915
BshNI	GGYRCC	2 cut(s)	393, 428
BsiEI	CGRYCG	1 cut(s)	916
BsiHKCI	CYCGRG	2 cut(s)	249, 467
BsiSI	CCGG	7 cut(s)	108, 216, 264, 468, 516, 630, 912
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	4 cut(s)	337, 468, 555, 719
BsmFI	GGGAC	1 cut(s)	436
BsnI	GGCC	7 cut(s)	120, 135, 492, 515, 634, 899, 915
BsoBI	CYCGRG	2 cut(s)	249, 467
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp143I	GATC	4 cut(s)	227, 266, 501, 642
BspANI	GGCC	7 cut(s)	120, 135, 492, 515, 634, 899, 915
BspCNI	CTCAG	1 cut(s)	883
BspFNI	CGCG	3 cut(s)	306, 551, 668
BspLI	GGNNCC	4 cut(s)	268, 395, 430, 472
BspMAI	CTGCAG	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	57
BspPI	GGATC	3 cut(s)	235, 261, 274
BspT107I	GGYRCC	2 cut(s)	393, 428
BsrBI	CCGCTC	2 cut(s)	420, 679
BsrDI	GCAATG	1 cut(s)	181
BsrFI	RCCGGY	2 cut(s)	107, 911
BsrI	ACTGG	3 cut(s)	64, 516, 908
BssAI	RCCGGY	2 cut(s)	107, 911
BssECI	CCNNGG	3 cut(s)	250, 467, 739
BssMI	GATC	4 cut(s)	227, 266, 501, 642
BssNI	GRCGYC	2 cut(s)	394, 405
BssT1I	CCWWGG	1 cut(s)	739
Bst4CI	ACNGT	1 cut(s)	433
BstACI	GRCGYC	2 cut(s)	394, 405
BstC8I	GCNNGC	8 cut(s)	388, 392, 459, 537, 546, 577, 587, 888
BstDEI	CTNAG	1 cut(s)	891
BstF5I	GGATG	1 cut(s)	58
BstFNI	CGCG	3 cut(s)	306, 551, 668
BstH2I	RGCGCY	2 cut(s)	315, 397
BstHHI	GCGC	3 cut(s)	314, 322, 396
BstKTI	GATC	4 cut(s)	230, 269, 504, 645
BstMBI	GATC	4 cut(s)	227, 266, 501, 642
BstMCI	CGRYCG	1 cut(s)	916
BstPAI	GACNNNNGTC	1 cut(s)	702
BstSCI	CCNGG	4 cut(s)	466, 467, 515, 629
BstSFI	CTRYAG	1 cut(s)	50
BstSLI	GKGCMC	1 cut(s)	431
BstUI	CGCG	3 cut(s)	306, 551, 668
BstV2I	GAAGAC	4 cut(s)	102, 250, 262, 702
BstX2I	RGATCY	2 cut(s)	266, 501
BstXI	CCANNNNNNTGG	1 cut(s)	571
BstYI	RGATCY	2 cut(s)	266, 501
BstZI	CGGCCG	1 cut(s)	913
BsuRI	GGCC	7 cut(s)	120, 135, 492, 515, 634, 899, 915
BtrI	CACGTC	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	509
BveI	ACCTGC	1 cut(s)	57
Cac8I	GCNNGC	8 cut(s)	388, 392, 459, 537, 546, 577, 587, 888
CfoI	GCGC	3 cut(s)	314, 322, 396
Cfr10I	RCCGGY	2 cut(s)	107, 911
Cfr13I	GGNCC	3 cut(s)	133, 471, 632
Cfr9I	CCCGGG	1 cut(s)	467
CseI	GACGC	2 cut(s)	394, 615
Csp6I	GTAC	1 cut(s)	615
CviAII	CATG	5 cut(s)	337, 488, 646, 848, 877
CviQI	GTAC	1 cut(s)	615
DdeI	CTNAG	1 cut(s)	891
DinI	GGCGCC	1 cut(s)	395
DpnI	GATC	4 cut(s)	229, 268, 503, 644
DpnII	GATC	4 cut(s)	227, 266, 501, 642
EaeI	YGGCCR	3 cut(s)	490, 513, 913
EagI	CGGCCG	1 cut(s)	913
EciI	GGCGGA	1 cut(s)	522
EclXI	CGGCCG	1 cut(s)	913
Eco130I	CCWWGG	1 cut(s)	739
Eco32I	GATATC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	471
Eco52I	CGGCCG	1 cut(s)	913
Eco57I	CTGAAG	1 cut(s)	837
Eco88I	CYCGRG	2 cut(s)	249, 467
EcoRI	GAATTC	2 cut(s)	88, 871
EcoRV	GATATC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	739
EgeI	GGCGCC	1 cut(s)	395
EheI	GGCGCC	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	739
FaeI	CATG	5 cut(s)	340, 491, 649, 851, 880
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	5 cut(s)	336, 487, 645, 847, 876
FauI	CCCGC	7 cut(s)	268, 311, 413, 466, 549, 572, 578
FbaI	TGATCA	1 cut(s)	642
FokI	GGATG	1 cut(s)	45
GlaI	GCGC	3 cut(s)	313, 321, 395
GsuI	CTGGAG	1 cut(s)	710
HaeII	RGCGCY	2 cut(s)	315, 397
HaeIII	GGCC	7 cut(s)	120, 135, 492, 515, 634, 899, 915
HapII	CCGG	7 cut(s)	108, 216, 264, 468, 516, 630, 912
HgaI	GACGC	2 cut(s)	394, 615
HhaI	GCGC	3 cut(s)	314, 322, 396
Hin1I	GRCGYC	2 cut(s)	394, 405
Hin1II	CATG	5 cut(s)	340, 491, 649, 851, 880
Hin6I	GCGC	3 cut(s)	312, 320, 394
HinP1I	GCGC	3 cut(s)	312, 320, 394
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HinfI	GANTC	1 cut(s)	495
HpaII	CCGG	7 cut(s)	108, 216, 264, 468, 516, 630, 912
HphI	GGTGA	3 cut(s)	199, 233, 292
Hpy166II	GTNNAC	2 cut(s)	561, 854
Hpy188I	TCNGA	3 cut(s)	94, 232, 452
Hpy188III	TCNNGA	5 cut(s)	436, 478, 499, 689, 868
Hpy8I	GTNNAC	2 cut(s)	561, 854
Hpy99I	CGWCG	2 cut(s)	353, 556
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	5 cut(s)	52, 411, 718, 824, 880
HpyF3I	CTNAG	1 cut(s)	891
HpySE526I	ACGT	1 cut(s)	333
Hsp92I	GRCGYC	2 cut(s)	394, 405
Hsp92II	CATG	5 cut(s)	340, 491, 649, 851, 880
HspAI	GCGC	3 cut(s)	312, 320, 394
KasI	GGCGCC	1 cut(s)	393
Ksp22I	TGATCA	1 cut(s)	642
Kzo9I	GATC	4 cut(s)	227, 266, 501, 642
LmnI	GCTCC	2 cut(s)	327, 841
LweI	GCATC	2 cut(s)	64, 790
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	5 cut(s)	205, 433, 442, 478, 507
MalI	GATC	4 cut(s)	229, 268, 503, 644
MbiI	CCGCTC	2 cut(s)	420, 679
MboI	GATC	4 cut(s)	227, 266, 501, 642
MboII	GAAGA	4 cut(s)	107, 255, 267, 707
MfeI	CAATTG	1 cut(s)	881
MflI	RGATCY	2 cut(s)	266, 501
MhlI	GDGCHC	1 cut(s)	431
MluCI	AATT	4 cut(s)	88, 621, 871, 881
Mly113I	GGCGCC	1 cut(s)	394
MslI	CAYNNNNRTG	1 cut(s)	440
MspA1I	CMGCKG	4 cut(s)	117, 168, 709, 890
MspI	CCGG	7 cut(s)	108, 216, 264, 468, 516, 630, 912
MspR9I	CCNGG	4 cut(s)	468, 469, 517, 631
MunI	CAATTG	1 cut(s)	881
MvnI	CGCG	3 cut(s)	306, 551, 668
NarI	GGCGCC	1 cut(s)	394
NciI	CCSGG	4 cut(s)	468, 469, 517, 631
NdeII	GATC	4 cut(s)	227, 266, 501, 642
NlaIII	CATG	5 cut(s)	340, 491, 649, 851, 880
NlaIV	GGNNCC	4 cut(s)	268, 395, 430, 472
NmuCI	GTSAC	5 cut(s)	205, 433, 442, 478, 507
OliI	CACNNNNGTG	1 cut(s)	440
PaqCI	CACCTGC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	623
PfeI	GAWTC	1 cut(s)	495
PflMI	CCANNNNNTGG	1 cut(s)	337
PluTI	GGCGCC	1 cut(s)	397
PshAI	GACNNNNGTC	1 cut(s)	702
PspN4I	GGNNCC	4 cut(s)	268, 395, 430, 472
PspPI	GGNCC	3 cut(s)	133, 471, 632
PstI	CTGCAG	1 cut(s)	54
PsuI	RGATCY	2 cut(s)	266, 501
PvuII	CAGCTG	2 cut(s)	709, 890
RsaI	GTAC	1 cut(s)	616
RsaNI	GTAC	1 cut(s)	615
RseI	CAYNNNNRTG	1 cut(s)	440
Sau3AI	GATC	4 cut(s)	227, 266, 501, 642
Sau96I	GGNCC	3 cut(s)	133, 471, 632
ScrFI	CCNGG	4 cut(s)	468, 469, 517, 631
SduI	GDGCHC	1 cut(s)	431
SfaNI	GCATC	2 cut(s)	64, 790
SfcI	CTRYAG	1 cut(s)	50
SfoI	GGCGCC	1 cut(s)	395
SinI	GGWCC	1 cut(s)	471
SmaI	CCCGGG	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	440
Sse9I	AATT	4 cut(s)	88, 621, 871, 881
SspDI	GGCGCC	1 cut(s)	393
StyD4I	CCNGG	4 cut(s)	466, 467, 515, 629
StyI	CCWWGG	1 cut(s)	739
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	2 cut(s)	156, 498
TasI	AATT	4 cut(s)	88, 621, 871, 881
TfiI	GAWTC	1 cut(s)	495
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	5 cut(s)	205, 433, 442, 478, 507
Tsp45I	GTSAC	5 cut(s)	205, 433, 442, 478, 507
TspDTI	ATGAA	1 cut(s)	836
TspMI	CCCGGG	1 cut(s)	467
TspRI	CASTG	1 cut(s)	516
Van91I	CCANNNNNTGG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	471
XapI	RAATTY	2 cut(s)	88, 871
XmaI	CCCGGG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.