Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0015819

Physical Location & Seq

Genomic Coordinates Reverse (-)

7032595 .. 7033527

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g06790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGACACCCATTCTCTTCCCCCTCCTTTCCATACAAGAGATTTCCACCTGCATCACCAGCAGCAGCATCCTCAGTTCCACCACCAGCAACAGAATTCCGAAGACGAGCAAACCGGAAGCAGCGGCCTTAACAAGGGACAGAAGAGAGAGCGGGATATCGACAACAATGACAGCGGTGGCAATGGAGGCGAATTAGGCAAAGAGCTCAATGTTACCATGTCCGGTGGTGACGGATCAGAAATGACGAGAAGGCCCCGAGGAAGACCTGCTGGATCCAAGAACAAGCCCAAGCCCCCCATCATCATCACCCGGGACAGCGCCAATGCGCTCCGCACCCACGTCATGGAGATTGCCGACGGGTGCGACATAGTGGAGAGTGTTGCCACCTTTGCTCGCAGGCGCCAGAGAGGCGTCTGCATTATGAGCGGGACCGGCACTGTCACGAATGTGACCCTCAGGCAGCCCGCCTCCCCAGGGTCTATTGTGACCTTGCACGGTCGATTTGAGATCTTGTCATTAGCAGGGTCTTTTCTGCCTCCTCCAGCCCCGCCTGCCGCAACTGGTTTAACTATATATCTGGCAGGAGGGCAAGGGCAAGTAGTAGGGGGAAGCGTTGTGGGAACGCTAATTGCATCTGGCCCGGTTGTTATCATGGCGGCTTCGTTTAGCAACGCGGCATATGAGCGGCTTCCACTGGAGGAAGACGAGGGTCAACTACCGATGCAAAGCGGAGGAGGTGGAAGTCTTGGGTCTCCGAGCGGAGTTGGTCATCAGAACCAGCAACAACAGCAGCAGCAGCAGCAGCAACAACTTATGGCGGAAGCTGCAAACTCAAATCCGCCTCTTTTTCATGGGTTACCTCCCAATCTCCTGAATTCCATGCAATTGCCAGCCGAGGCAGCGTACTGGGCTACTGGCCGCCCGCCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

311

Amino Acids

32.93

Weight (kDa)

6.45

Isoelectric Point (pI)

56.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	111 - 223	2e-25	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12050 AT4G22810
fragaria_vesca	FvH4_5g00910
malus_domestica	MD04G1077100.v1.1 MD06G1067800.v1.1
prunus_persica	Prupe.5G082200_v2.0.a1
pyrus_communis	pycom04g06790 pycom06g06490
rosa_chinensis	RchiOBHm_Chr7g0200471
rosa_laevigata	RLG00000003723
rosa_multiflora	Rmu_sc0000617.1_g000026
rosa_rugosa	Rorug07G0060400
rosa_samantha	Rh7AG186000 Rh7DG190100
rosa_wichuraiana	Rw7G016310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	57
Acc36I	ACCTGC	2 cut(s)	57, 274
AccB1I	GGYRCC	1 cut(s)	399
AccB7I	CCANNNNNTGG	1 cut(s)	343
AccBSI	CCGCTC	4 cut(s)	151, 426, 685, 759
AccII	CGCG	1 cut(s)	674
AclWI	GGATC	3 cut(s)	241, 267, 280
AcoI	YGGCCR	1 cut(s)	916
AcsI	RAATTY	2 cut(s)	94, 874
AcyI	GRCGYC	2 cut(s)	400, 411
AfaI	GTAC	1 cut(s)	905
AfiI	CCNNNNNNNGG	3 cut(s)	133, 343, 474
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	1 cut(s)	472
AleI	CACNNNNGTG	1 cut(s)	446
AluBI	AGCT	2 cut(s)	205, 824
AluI	AGCT	2 cut(s)	205, 824
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	756
AlwI	GGATC	3 cut(s)	241, 267, 280
Ama87I	CYCGRG	2 cut(s)	255, 309
AoxI	GGCC	4 cut(s)	124, 251, 637, 916
ApoI	RAATTY	2 cut(s)	94, 874
AspLEI	GCGC	3 cut(s)	320, 328, 402
AspS9I	GGNCC	3 cut(s)	252, 429, 638
AsuC2I	CCSGG	3 cut(s)	310, 311, 641
AsuHPI	GGTGA	3 cut(s)	47, 239, 298
AvaI	CYCGRG	2 cut(s)	255, 309
AvaII	GGWCC	1 cut(s)	429
AxyI	CCTNAGG	1 cut(s)	455
BamHI	GGATCC	1 cut(s)	272
BanI	GGYRCC	1 cut(s)	399
BanII	GRGCYC	1 cut(s)	207
BbsI	GAAGAC	3 cut(s)	108, 268, 708
Bbv12I	GWGCWC	1 cut(s)	207
BccI	CCATC	1 cut(s)	305
BciT130I	CCWGG	1 cut(s)	474
BcnI	CCSGG	3 cut(s)	310, 311, 641
BcoDI	GTCTC	1 cut(s)	756
BfoI	RGCGCY	2 cut(s)	321, 403
BfuAI	ACCTGC	2 cut(s)	57, 274
BglI	GCCNNNNNGGC	1 cut(s)	408
BglII	AGATCT	1 cut(s)	507
Bme1390I	CCNGG	4 cut(s)	310, 311, 474, 641
Bme18I	GGWCC	1 cut(s)	429
BmeT110I	CYCGRG	2 cut(s)	255, 309
BmgBI	CACGTC	1 cut(s)	340
BmgT120I	GGNCC	3 cut(s)	252, 429, 638
BmiI	GGNNCC	4 cut(s)	254, 274, 401, 430
BmrFI	CCNGG	4 cut(s)	310, 311, 474, 641
BmrI	ACTGGG	1 cut(s)	916
BmsI	GCATC	4 cut(s)	61, 76, 641, 711
BmuI	ACTGGG	1 cut(s)	916
BoxI	GACNNNNGTC	1 cut(s)	708
BpiI	GAAGAC	3 cut(s)	108, 268, 708
BpmI	CTGGAG	2 cut(s)	525, 716
BpuMI	CCSGG	3 cut(s)	310, 311, 641
BsaHI	GRCGYC	2 cut(s)	400, 411
BsaI	GGTCTC	1 cut(s)	756
BsaJI	CCNNGG	5 cut(s)	256, 309, 472, 473, 894
BsaWI	WCCGGW	2 cut(s)	113, 221
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 343, 474
Bse118I	RCCGGY	1 cut(s)	431
Bse1I	ACTGG	4 cut(s)	565, 699, 911, 919
Bse21I	CCTNAGG	1 cut(s)	455
Bse3DI	GCAATG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	5 cut(s)	256, 309, 472, 473, 894
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	3 cut(s)	133, 343, 474
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	86, 469
BseNI	ACTGG	4 cut(s)	565, 699, 911, 919
BseRI	GAGGAG	2 cut(s)	528, 747
Bsh1236I	CGCG	1 cut(s)	674
Bsh1285I	CGRYCG	1 cut(s)	499
BshFI	GGCC	4 cut(s)	126, 253, 639, 918
BshNI	GGYRCC	1 cut(s)	399
BsiEI	CGRYCG	1 cut(s)	499
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	2 cut(s)	255, 309
BsiSI	CCGG	5 cut(s)	114, 222, 310, 432, 641
BslFI	GGGAC	3 cut(s)	150, 326, 442
BslI	CCNNNNNNNGG	3 cut(s)	133, 343, 474
BsmAI	GTCTC	1 cut(s)	756
BsmFI	GGGAC	3 cut(s)	150, 326, 442
BsnI	GGCC	4 cut(s)	126, 253, 639, 918
Bso31I	GGTCTC	1 cut(s)	756
BsoBI	CYCGRG	2 cut(s)	255, 309
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	3 cut(s)	233, 272, 507
BspANI	GGCC	4 cut(s)	126, 253, 639, 918
BspCNI	CTCAG	2 cut(s)	85, 468
BspFNI	CGCG	1 cut(s)	674
BspLI	GGNNCC	4 cut(s)	254, 274, 401, 430
BspMI	ACCTGC	2 cut(s)	57, 274
BspPI	GGATC	3 cut(s)	241, 267, 280
BspT107I	GGYRCC	1 cut(s)	399
BspTNI	GGTCTC	1 cut(s)	756
BsrBI	CCGCTC	4 cut(s)	151, 426, 685, 759
BsrDI	GCAATG	1 cut(s)	187
BsrFI	RCCGGY	1 cut(s)	431
BsrI	ACTGG	4 cut(s)	565, 699, 911, 919
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	5 cut(s)	256, 309, 472, 473, 894
BssMI	GATC	3 cut(s)	233, 272, 507
BssNI	GRCGYC	2 cut(s)	400, 411
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	439, 497
Bst6I	CTCTTC	2 cut(s)	21, 137
BstACI	GRCGYC	2 cut(s)	400, 411
BstC8I	GCNNGC	6 cut(s)	394, 398, 465, 552, 891, 923
BstDEI	CTNAG	2 cut(s)	72, 455
BstEII	GGTNACC	1 cut(s)	855
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	1 cut(s)	674
BstH2I	RGCGCY	2 cut(s)	321, 403
BstHHI	GCGC	3 cut(s)	320, 328, 402
BstKTI	GATC	3 cut(s)	236, 275, 510
BstMAI	GTCTC	1 cut(s)	756
BstMBI	GATC	3 cut(s)	233, 272, 507
BstMCI	CGRYCG	1 cut(s)	499
BstNI	CCWGG	1 cut(s)	474
BstPAI	GACNNNNGTC	1 cut(s)	708
BstPI	GGTNACC	1 cut(s)	855
BstSCI	CCNGG	4 cut(s)	308, 309, 472, 639
BstUI	CGCG	1 cut(s)	674
BstV2I	GAAGAC	3 cut(s)	108, 268, 708
BstX2I	RGATCY	2 cut(s)	272, 507
BstYI	RGATCY	2 cut(s)	272, 507
Bsu36I	CCTNAGG	1 cut(s)	455
BsuRI	GGCC	4 cut(s)	126, 253, 639, 918
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	435, 692
BveI	ACCTGC	2 cut(s)	57, 274
Cac8I	GCNNGC	6 cut(s)	394, 398, 465, 552, 891, 923
CfoI	GCGC	3 cut(s)	320, 328, 402
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	3 cut(s)	252, 429, 638
Cfr9I	CCCGGG	1 cut(s)	309
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	904
CviAII	CATG	5 cut(s)	217, 343, 652, 851, 880
CviQI	GTAC	1 cut(s)	904
DdeI	CTNAG	2 cut(s)	72, 455
DinI	GGCGCC	1 cut(s)	401
DpnI	GATC	3 cut(s)	235, 274, 509
DpnII	GATC	3 cut(s)	233, 272, 507
EaeI	YGGCCR	1 cut(s)	916
Eam1104I	CTCTTC	2 cut(s)	21, 137
EarI	CTCTTC	2 cut(s)	21, 137
EciI	GGCGGA	2 cut(s)	828, 833
Ecl136II	GAGCTC	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	756
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	429
Eco53kI	GAGCTC	1 cut(s)	205
Eco81I	CCTNAGG	1 cut(s)	455
Eco88I	CYCGRG	2 cut(s)	255, 309
Eco91I	GGTNACC	1 cut(s)	855
EcoICRI	GAGCTC	1 cut(s)	205
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	252
EcoO65I	GGTNACC	1 cut(s)	855
EcoRI	GAATTC	2 cut(s)	94, 874
EcoRII	CCWGG	1 cut(s)	472
EcoRV	GATATC	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	207
EgeI	GGCGCC	1 cut(s)	401
EheI	GGCGCC	1 cut(s)	401
FaeI	CATG	5 cut(s)	220, 346, 655, 854, 883
FaqI	GGGAC	3 cut(s)	150, 326, 442
FatI	CATG	5 cut(s)	216, 342, 651, 850, 879
FauI	CCCGC	5 cut(s)	144, 419, 472, 555, 930
FauNDI	CATATG	1 cut(s)	679
FokI	GGATG	1 cut(s)	54
FriOI	GRGCYC	1 cut(s)	207
GlaI	GCGC	3 cut(s)	319, 327, 401
GsuI	CTGGAG	2 cut(s)	525, 716
HaeII	RGCGCY	2 cut(s)	321, 403
HaeIII	GGCC	4 cut(s)	126, 253, 639, 918
HapII	CCGG	5 cut(s)	114, 222, 310, 432, 641
HgaI	GACGC	1 cut(s)	400
HhaI	GCGC	3 cut(s)	320, 328, 402
Hin1I	GRCGYC	2 cut(s)	400, 411
Hin1II	CATG	5 cut(s)	220, 346, 655, 854, 883
Hin6I	GCGC	3 cut(s)	318, 326, 400
HinP1I	GCGC	3 cut(s)	318, 326, 400
HincII	GTYRAC	1 cut(s)	713
HindII	GTYRAC	1 cut(s)	713
HpaII	CCGG	5 cut(s)	114, 222, 310, 432, 641
HphI	GGTGA	3 cut(s)	47, 239, 298
Hpy166II	GTNNAC	1 cut(s)	713
Hpy188I	TCNGA	4 cut(s)	100, 238, 756, 774
Hpy188III	TCNNGA	2 cut(s)	442, 871
Hpy8I	GTNNAC	1 cut(s)	713
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	2 cut(s)	439, 497
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	7 cut(s)	52, 417, 493, 632, 724, 827, 883
HpyF3I	CTNAG	2 cut(s)	72, 455
HpySE526I	ACGT	1 cut(s)	339
Hsp92I	GRCGYC	2 cut(s)	400, 411
Hsp92II	CATG	5 cut(s)	220, 346, 655, 854, 883
HspAI	GCGC	3 cut(s)	318, 326, 400
KasI	GGCGCC	1 cut(s)	399
Kzo9I	GATC	3 cut(s)	233, 272, 507
LmnI	GCTCC	1 cut(s)	333
LweI	GCATC	4 cut(s)	61, 76, 641, 711
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	6 cut(s)	211, 227, 439, 448, 484, 855
MalI	GATC	3 cut(s)	235, 274, 509
MbiI	CCGCTC	4 cut(s)	151, 426, 685, 759
MboI	GATC	3 cut(s)	233, 272, 507
MboII	GAAGA	5 cut(s)	8, 113, 154, 273, 713
MfeI	CAATTG	1 cut(s)	884
MflI	RGATCY	2 cut(s)	272, 507
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	5 cut(s)	94, 191, 627, 874, 884
Mly113I	GGCGCC	1 cut(s)	400
MseI	TTAA	2 cut(s)	129, 566
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	2 cut(s)	123, 174
MspI	CCGG	5 cut(s)	114, 222, 310, 432, 641
MspR9I	CCNGG	4 cut(s)	310, 311, 474, 641
MunI	CAATTG	1 cut(s)	884
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	674
NarI	GGCGCC	1 cut(s)	400
NciI	CCSGG	3 cut(s)	310, 311, 641
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	3 cut(s)	233, 272, 507
NlaIII	CATG	5 cut(s)	220, 346, 655, 854, 883
NlaIV	GGNNCC	4 cut(s)	254, 274, 401, 430
NmeAIII	GCCGAG	1 cut(s)	919
NmuCI	GTSAC	4 cut(s)	227, 439, 448, 484
OliI	CACNNNNGTG	1 cut(s)	446
PaqCI	CACCTGC	1 cut(s)	57
PasI	CCCWGGG	1 cut(s)	473
PflMI	CCANNNNNTGG	1 cut(s)	343
PluTI	GGCGCC	1 cut(s)	403
PshAI	GACNNNNGTC	1 cut(s)	708
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	472
PspEI	GGTNACC	1 cut(s)	855
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	4 cut(s)	254, 274, 401, 430
PspPI	GGNCC	3 cut(s)	252, 429, 638
PsuI	RGATCY	2 cut(s)	272, 507
RsaI	GTAC	1 cut(s)	905
RsaNI	GTAC	1 cut(s)	904
RseI	CAYNNNNRTG	1 cut(s)	446
SacI	GAGCTC	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	129, 566
Sau3AI	GATC	3 cut(s)	233, 272, 507
Sau96I	GGNCC	3 cut(s)	252, 429, 638
ScrFI	CCNGG	4 cut(s)	310, 311, 474, 641
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	9 cut(s)	51, 207, 268, 342, 389, 491, 739, 826, 862
SfaNI	GCATC	4 cut(s)	61, 76, 641, 711
SfoI	GGCGCC	1 cut(s)	401
SinI	GGWCC	1 cut(s)	429
SmaI	CCCGGG	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	446
Sse9I	AATT	5 cut(s)	94, 191, 627, 874, 884
SspDI	GGCGCC	1 cut(s)	399
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	4 cut(s)	308, 309, 472, 639
TaaI	ACNGT	2 cut(s)	439, 497
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	2 cut(s)	159, 499
TasI	AATT	5 cut(s)	94, 191, 627, 874, 884
TauI	GCSGC	6 cut(s)	126, 557, 659, 677, 688, 921
Tru1I	TTAA	2 cut(s)	129, 566
Tru9I	TTAA	2 cut(s)	129, 566
TscAI	CASTG	2 cut(s)	442, 699
TseFI	GTSAC	4 cut(s)	227, 439, 448, 484
Tsp45I	GTSAC	4 cut(s)	227, 439, 448, 484
TspDTI	ATGAA	1 cut(s)	839
TspGWI	ACGGA	1 cut(s)	246
TspMI	CCCGGG	1 cut(s)	309
TspRI	CASTG	2 cut(s)	442, 699
Van91I	CCANNNNNTGG	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	429
XagI	CCTNNNNNAGG	1 cut(s)	131
XapI	RAATTY	2 cut(s)	94, 874
XmaI	CCCGGG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.