Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0015819

Physical Location & Seq

Genomic Coordinates Forward (+)

52063919 .. 52064848

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003723

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGACACCCATTCTCTTCCCCCTCCTTTCCACACTAGAGATTTCCAACTCCATCACCAGCAGCAGCAGCACCAGCACCAGCACCACCAGTTCCACCACCAGCAGCAGAACTCCGAAGACGAGCAAACCGGAAGCAGCGGCCTGAACAAGGGAACCAAAAGAGAGCGAGATATCGACAGCAACAACGACAGTGGAAATGGTGGTGAAGGCAGCAAAGAGCTGAACATCACTGTTTCCGGGGATGGATCGGAAATGACAAGAAGACCTAGAGGCAGGCCCGCCGGATCCAAAAACAAGCCGAAGCCGCCCATCATCATTACTCGAGATAGTGCTAATGCTCTCCGCACCCATGTCATGGAAATCGCCGATGGGTGCGATATAGTGGAGAGTGTTGCCACCTTTGCTCGCAGGCGCCAGAGAGGCGTCTGCATTATGAGCGGCACGGGGACTGTTACCAACGTGACCCTCAGGCAACCGGCGTCCCCGGGCTCGGTCGTGACTTTACACGGCCGATTTGAGATCTTGTCACTAGCAGGGTCCTTCCTACCACCTCCAGCCCCACCTGCCGCGACTGGGTTGACCATTTATCTGGCAGGCGGGCAAGGGCAGGTGGTAGGAGGGAGTGTTGTTGGGACTCTTTTGGCTTCGGGTCCGGTTGTGATCATGGCTGCCTCGTTTAGCAACGCCGCCTACGAGCGGCTTCCACTGGAGGAGGACGAGGGTGCGATGCCAATGCCGGGAGGGAGTATGGGGTCTCCAACCGCGGTTGGTCAACAGCAGCACCAGCAGCACCAGCAGCAACAACAGCTTTTGGCCGAAGCTGCTAATACGAATGCGCCTCTTTTTCATGGGTTACCTCCCAATCTCCTAAACTCCATGCAATTGCCGGCTGAAGCGGCATACTGGGCTACTGGCCGCCCTCCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

310

Amino Acids

33.02

Weight (kDa)

6.56

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	115 - 227	4.5e-25	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12050 AT4G22810
fragaria_vesca	FvH4_5g00910
malus_domestica	MD04G1077100.v1.1 MD06G1067800.v1.1
prunus_persica	Prupe.5G082200_v2.0.a1
pyrus_communis	pycom04g06790 pycom06g06490
rosa_chinensis	RchiOBHm_Chr7g0200471
rosa_laevigata	RLG00000003723
rosa_multiflora	Rmu_sc0000617.1_g000026
rosa_rugosa	Rorug07G0060400
rosa_samantha	Rh7AG186000 Rh7DG190100
rosa_wichuraiana	Rw7G016310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	571, 598
Acc36I	ACCTGC	2 cut(s)	571, 598
AccB1I	GGYRCC	1 cut(s)	411
AccB7I	CCANNNNNTGG	1 cut(s)	355
AccBSI	CCGCTC	2 cut(s)	438, 697
AccII	CGCG	2 cut(s)	569, 764
AclWI	GGATC	3 cut(s)	253, 279, 292
AcoI	YGGCCR	3 cut(s)	508, 813, 913
AcuI	CTGAAG	1 cut(s)	912
AcyI	GRCGYC	3 cut(s)	412, 423, 479
AfiI	CCNNNNNNNGG	6 cut(s)	148, 355, 490, 573, 696, 737
AluBI	AGCT	3 cut(s)	220, 808, 821
AluI	AGCT	3 cut(s)	220, 808, 821
Alw26I	GTCTC	1 cut(s)	759
AlwI	GGATC	3 cut(s)	253, 279, 292
Ama87I	CYCGRG	2 cut(s)	321, 484
AoxI	GGCC	5 cut(s)	139, 275, 508, 813, 913
AspLEI	GCGC	2 cut(s)	414, 838
AspS9I	GGNCC	3 cut(s)	276, 537, 650
AsuC2I	CCSGG	4 cut(s)	238, 485, 486, 738
AsuHPI	GGTGA	2 cut(s)	47, 215
AvaI	CYCGRG	2 cut(s)	321, 484
AvaII	GGWCC	2 cut(s)	537, 650
AxyI	CCTNAGG	1 cut(s)	467
BamHI	GGATCC	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	491
BbsI	GAAGAC	2 cut(s)	123, 268
BccI	CCATC	4 cut(s)	60, 236, 317, 362
BceAI	ACGGC	1 cut(s)	523
BcgI	CGANNNNNNTGC	2 cut(s)	715, 749
BclI	TGATCA	1 cut(s)	660
BcnI	CCSGG	4 cut(s)	238, 485, 486, 738
BcoDI	GTCTC	1 cut(s)	759
BfaI	CTAG	3 cut(s)	36, 267, 530
BfoI	RGCGCY	1 cut(s)	415
BfuAI	ACCTGC	2 cut(s)	571, 598
BglI	GCCNNNNNGGC	1 cut(s)	420
BglII	AGATCT	1 cut(s)	519
Bme1390I	CCNGG	4 cut(s)	238, 485, 486, 738
Bme18I	GGWCC	2 cut(s)	537, 650
BmeT110I	CYCGRG	2 cut(s)	321, 484
BmgT120I	GGNCC	3 cut(s)	276, 537, 650
BmiI	GGNNCC	5 cut(s)	154, 286, 413, 538, 651
BmrFI	CCNGG	4 cut(s)	238, 485, 486, 738
BmrI	ACTGGG	2 cut(s)	582, 913
BmsI	GCATC	1 cut(s)	717
BmuI	ACTGGG	2 cut(s)	582, 913
BpiI	GAAGAC	2 cut(s)	123, 268
BpmI	CTGGAG	2 cut(s)	537, 728
BpuMI	CCSGG	4 cut(s)	238, 485, 486, 738
BsaHI	GRCGYC	3 cut(s)	412, 423, 479
BsaI	GGTCTC	1 cut(s)	759
BsaJI	CCNNGG	4 cut(s)	237, 483, 484, 762
BsaWI	WCCGGW	2 cut(s)	128, 652
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bsc4I	CCNNNNNNNGG	6 cut(s)	148, 355, 490, 573, 696, 737
Bse118I	RCCGGY	2 cut(s)	475, 886
Bse1I	ACTGG	5 cut(s)	88, 577, 711, 908, 916
Bse21I	CCTNAGG	1 cut(s)	467
BseDI	CCNNGG	4 cut(s)	237, 483, 484, 762
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	6 cut(s)	148, 355, 490, 573, 696, 737
BseMII	CTCAG	1 cut(s)	481
BseNI	ACTGG	5 cut(s)	88, 577, 711, 908, 916
BseRI	GAGGAG	1 cut(s)	725
BseX3I	CGGCCG	1 cut(s)	508
Bsh1236I	CGCG	2 cut(s)	569, 764
Bsh1285I	CGRYCG	2 cut(s)	495, 511
BshFI	GGCC	5 cut(s)	141, 277, 510, 815, 915
BshNI	GGYRCC	1 cut(s)	411
BsiEI	CGRYCG	2 cut(s)	495, 511
BsiHKCI	CYCGRG	2 cut(s)	321, 484
BsiSI	CCGG	8 cut(s)	129, 237, 282, 476, 485, 653, 737, 887
BslFI	GGGAC	3 cut(s)	460, 466, 646
BslI	CCNNNNNNNGG	6 cut(s)	148, 355, 490, 573, 696, 737
BsmAI	GTCTC	1 cut(s)	759
BsmFI	GGGAC	3 cut(s)	460, 466, 646
BsmI	GAATGC	1 cut(s)	838
BsnI	GGCC	5 cut(s)	141, 277, 510, 815, 915
Bso31I	GGTCTC	1 cut(s)	759
BsoBI	CYCGRG	2 cut(s)	321, 484
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	4 cut(s)	245, 284, 519, 660
BspANI	GGCC	5 cut(s)	141, 277, 510, 815, 915
BspCNI	CTCAG	1 cut(s)	480
BspFNI	CGCG	2 cut(s)	569, 764
BspLI	GGNNCC	5 cut(s)	154, 286, 413, 538, 651
BspMI	ACCTGC	2 cut(s)	571, 598
BspPI	GGATC	3 cut(s)	253, 279, 292
BspT107I	GGYRCC	1 cut(s)	411
BspTNI	GGTCTC	1 cut(s)	759
BsrBI	CCGCTC	2 cut(s)	438, 697
BsrFI	RCCGGY	2 cut(s)	475, 886
BsrI	ACTGG	5 cut(s)	88, 577, 711, 908, 916
BssAI	RCCGGY	2 cut(s)	475, 886
BssECI	CCNNGG	4 cut(s)	237, 483, 484, 762
BssMI	GATC	4 cut(s)	245, 284, 519, 660
BssNI	GRCGYC	3 cut(s)	412, 423, 479
Bst4CI	ACNGT	3 cut(s)	191, 232, 451
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	3 cut(s)	412, 423, 479
BstC8I	GCNNGC	7 cut(s)	275, 279, 406, 410, 595, 599, 888
BstDEI	CTNAG	1 cut(s)	467
BstDSI	CCRYGG	1 cut(s)	762
BstEII	GGTNACC	1 cut(s)	852
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	247
BstFNI	CGCG	2 cut(s)	569, 764
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	2 cut(s)	414, 838
BstKTI	GATC	4 cut(s)	248, 287, 522, 663
BstMAI	GTCTC	1 cut(s)	759
BstMBI	GATC	4 cut(s)	245, 284, 519, 660
BstMCI	CGRYCG	2 cut(s)	495, 511
BstPI	GGTNACC	1 cut(s)	852
BstSCI	CCNGG	4 cut(s)	236, 483, 484, 736
BstUI	CGCG	2 cut(s)	569, 764
BstV2I	GAAGAC	2 cut(s)	123, 268
BstX2I	RGATCY	2 cut(s)	284, 519
BstXI	CCANNNNNNTGG	1 cut(s)	589
BstYI	RGATCY	2 cut(s)	284, 519
BstZI	CGGCCG	1 cut(s)	508
Bsu36I	CCTNAGG	1 cut(s)	467
BsuRI	GGCC	5 cut(s)	141, 277, 510, 815, 915
BtgI	CCRYGG	1 cut(s)	762
BtgZI	GCGATG	1 cut(s)	740
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	3 cut(s)	196, 228, 704
BveI	ACCTGC	2 cut(s)	571, 598
Cac8I	GCNNGC	7 cut(s)	275, 279, 406, 410, 595, 599, 888
CfoI	GCGC	2 cut(s)	414, 838
Cfr10I	RCCGGY	2 cut(s)	475, 886
Cfr13I	GGNCC	3 cut(s)	276, 537, 650
Cfr42I	CCGCGG	1 cut(s)	765
Cfr9I	CCCGGG	1 cut(s)	484
CseI	GACGC	2 cut(s)	412, 468
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	5 cut(s)	350, 355, 664, 848, 877
DdeI	CTNAG	1 cut(s)	467
DinI	GGCGCC	1 cut(s)	413
DpnI	GATC	4 cut(s)	247, 286, 521, 662
DpnII	GATC	4 cut(s)	245, 284, 519, 660
EaeI	YGGCCR	3 cut(s)	508, 813, 913
EagI	CGGCCG	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EclXI	CGGCCG	1 cut(s)	508
Eco24I	GRGCYC	1 cut(s)	491
Eco31I	GGTCTC	1 cut(s)	759
Eco32I	GATATC	1 cut(s)	172
Eco47I	GGWCC	2 cut(s)	537, 650
Eco52I	CGGCCG	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	912
Eco81I	CCTNAGG	1 cut(s)	467
Eco88I	CYCGRG	2 cut(s)	321, 484
Eco91I	GGTNACC	1 cut(s)	852
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	537
EcoO65I	GGTNACC	1 cut(s)	852
EcoRV	GATATC	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	491
EgeI	GGCGCC	1 cut(s)	413
EheI	GGCGCC	1 cut(s)	413
FaeI	CATG	5 cut(s)	353, 358, 667, 851, 880
FaiI	YATR	9 cut(s)	351, 356, 380, 434, 665, 749, 849, 878, 901
FaqI	GGGAC	3 cut(s)	460, 466, 646
FatI	CATG	5 cut(s)	349, 354, 663, 847, 876
FauI	CCCGC	2 cut(s)	286, 590
FbaI	TGATCA	1 cut(s)	660
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	491
FspBI	CTAG	3 cut(s)	36, 267, 530
GlaI	GCGC	2 cut(s)	413, 837
GsuI	CTGGAG	2 cut(s)	537, 728
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	5 cut(s)	141, 277, 510, 815, 915
HapII	CCGG	8 cut(s)	129, 237, 282, 476, 485, 653, 737, 887
HgaI	GACGC	2 cut(s)	412, 468
HhaI	GCGC	2 cut(s)	414, 838
Hin1I	GRCGYC	3 cut(s)	412, 423, 479
Hin1II	CATG	5 cut(s)	353, 358, 667, 851, 880
Hin6I	GCGC	2 cut(s)	412, 836
HinP1I	GCGC	2 cut(s)	412, 836
HincII	GTYRAC	2 cut(s)	579, 773
HindII	GTYRAC	2 cut(s)	579, 773
HinfI	GANTC	1 cut(s)	634
HpaII	CCGG	8 cut(s)	129, 237, 282, 476, 485, 653, 737, 887
HphI	GGTGA	2 cut(s)	47, 215
Hpy166II	GTNNAC	2 cut(s)	579, 773
Hpy188I	TCNGA	2 cut(s)	115, 250
Hpy188III	TCNNGA	2 cut(s)	323, 496
Hpy8I	GTNNAC	2 cut(s)	579, 773
HpyAV	CCTTC	2 cut(s)	200, 550
HpyCH4III	ACNGT	3 cut(s)	191, 232, 451
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	2 cut(s)	429, 880
HpyF3I	CTNAG	1 cut(s)	467
HpySE526I	ACGT	1 cut(s)	459
Hsp92I	GRCGYC	3 cut(s)	412, 423, 479
Hsp92II	CATG	5 cut(s)	353, 358, 667, 851, 880
HspAI	GCGC	2 cut(s)	412, 836
KasI	GGCGCC	1 cut(s)	411
KroI	GCCGGC	1 cut(s)	886
KroNI	GCCGGC	1 cut(s)	888
Ksp22I	TGATCA	1 cut(s)	660
KspI	CCGCGG	1 cut(s)	765
Kzo9I	GATC	4 cut(s)	245, 284, 519, 660
LweI	GCATC	1 cut(s)	717
MaeI	CTAG	3 cut(s)	36, 267, 530
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	5 cut(s)	451, 460, 496, 525, 852
MalI	GATC	4 cut(s)	247, 286, 521, 662
MbiI	CCGCTC	2 cut(s)	438, 697
MboI	GATC	4 cut(s)	245, 284, 519, 660
MboII	GAAGA	3 cut(s)	8, 128, 273
MfeI	CAATTG	1 cut(s)	881
MflI	RGATCY	2 cut(s)	284, 519
MhlI	GDGCHC	1 cut(s)	491
MluCI	AATT	1 cut(s)	881
Mly113I	GGCGCC	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	628
MmeI	TCCRAC	2 cut(s)	70, 782
MroNI	GCCGGC	1 cut(s)	886
MspA1I	CMGCKG	2 cut(s)	138, 764
MspI	CCGG	8 cut(s)	129, 237, 282, 476, 485, 653, 737, 887
MspR9I	CCNGG	4 cut(s)	238, 485, 486, 738
MunI	CAATTG	1 cut(s)	881
Mva1269I	GAATGC	1 cut(s)	838
MvnI	CGCG	2 cut(s)	569, 764
NaeI	GCCGGC	1 cut(s)	888
NarI	GGCGCC	1 cut(s)	412
NciI	CCSGG	4 cut(s)	238, 485, 486, 738
NdeII	GATC	4 cut(s)	245, 284, 519, 660
NgoMIV	GCCGGC	1 cut(s)	886
NlaIII	CATG	5 cut(s)	353, 358, 667, 851, 880
NlaIV	GGNNCC	5 cut(s)	154, 286, 413, 538, 651
NmuCI	GTSAC	3 cut(s)	460, 496, 525
PaeR7I	CTCGAG	1 cut(s)	321
PaqCI	CACCTGC	2 cut(s)	571, 598
PcsI	WCGNNNNNNNCGW	1 cut(s)	690
PctI	GAATGC	1 cut(s)	838
PdiI	GCCGGC	1 cut(s)	888
PflMI	CCANNNNNTGG	1 cut(s)	355
PleI	GAGTC	1 cut(s)	628
PluTI	GGCGCC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	628
PpuMI	RGGWCCY	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	537
PspEI	GGTNACC	1 cut(s)	852
PspN4I	GGNNCC	5 cut(s)	154, 286, 413, 538, 651
PspPI	GGNCC	3 cut(s)	276, 537, 650
PspPPI	RGGWCCY	1 cut(s)	537
PsuI	RGATCY	2 cut(s)	284, 519
SacII	CCGCGG	1 cut(s)	765
Sau3AI	GATC	4 cut(s)	245, 284, 519, 660
Sau96I	GGNCC	3 cut(s)	276, 537, 650
SchI	GAGTC	1 cut(s)	628
ScrFI	CCNGG	4 cut(s)	238, 485, 486, 738
SduI	GDGCHC	1 cut(s)	491
SfaNI	GCATC	1 cut(s)	717
SfoI	GGCGCC	1 cut(s)	413
Sfr274I	CTCGAG	1 cut(s)	321
Sfr303I	CCGCGG	1 cut(s)	765
SgrBI	CCGCGG	1 cut(s)	765
SinI	GGWCC	2 cut(s)	537, 650
SlaI	CTCGAG	1 cut(s)	321
SmaI	CCCGGG	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
Sse9I	AATT	1 cut(s)	881
SspDI	GGCGCC	1 cut(s)	411
SspMI	CTAG	3 cut(s)	36, 267, 530
StyD4I	CCNGG	4 cut(s)	236, 483, 484, 736
TaaI	ACNGT	3 cut(s)	191, 232, 451
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	2 cut(s)	174, 322
TaqII	GACCGA	1 cut(s)	481
TasI	AATT	1 cut(s)	881
TauI	GCSGC	8 cut(s)	141, 307, 441, 569, 689, 700, 899, 918
TscAI	CASTG	3 cut(s)	196, 235, 711
TseFI	GTSAC	3 cut(s)	460, 496, 525
Tsp45I	GTSAC	3 cut(s)	460, 496, 525
TspDTI	ATGAA	1 cut(s)	836
TspMI	CCCGGG	1 cut(s)	484
TspRI	CASTG	3 cut(s)	196, 235, 711
Van91I	CCANNNNNTGG	1 cut(s)	355
VpaK11BI	GGWCC	2 cut(s)	537, 650
XagI	CCTNNNNNAGG	1 cut(s)	146
XhoI	CTCGAG	1 cut(s)	321
XmaI	CCCGGG	1 cut(s)	484
XspI	CTAG	3 cut(s)	36, 267, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.