Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0015819

Physical Location & Seq

Genomic Coordinates Reverse (-)

17609991 .. 17611982

Gene Structure 1992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG190100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGACACCCATTCTCTTCCCCCTCCTTTCCACACTAGAGATTTCCAACTCCATCACCAGCAGCAGCAGCAGCATCAGCACCAGCACCACCAGTTCCACCACCAGCAGCAGAACTCCGAAGACGAGCAAACCGGAAGCAGCGGCCTGAACAAGGGAACCAAAAGAGAGCGAGATATCGACAACAACAACGACAGTGGAAATGGTGGTGAAGGCAGCAAAGAGCTGAACATCACTGTTTCCGGGGATGGATCGGAAATGACAAGAAGACCTAGAGGCAGGCCCGCCGGATCCAAAAACAAGCCGAAGCCGCCCATCATCATTACTCGAGATAGTGCTAATGCTCTCCGCACTCATGTCATGGAAATCGCCGATGGGTGCGATATAGTGGAGAGTGTTGCCACCTTTGCTCGCAGGCGCCAGAGAGGAGTCTGCATTATGAGCGGCACGGGGACGGTTACCAACGTAACCCTCAGACAACCGGCGTCCCCGGGCTCGGTCGTGACTTTACACGGCCGATTTGAGATCTTGTCACTAGCAGGGTCCTTCCTACCACCTCCAGCCCCACCTGCCGCGACTGGGTTGACCATTTATCTGGCAGGCGGGCAAGGGCAGGTGGTAGGAGGGAGTGTTGTTGGGACTCTTTTGGCTTCGGGTCCGGTGGTGATCATGGCTGCCTCGTTTAGCAACGCCGCCTACGAGCGGCTTCCACTGGAGGAGGACGAGGGTGCGATGCCAATGCCGGGAGGGAGTATGGGGTCTCCAACTGCGGTTGGTCAACAGCAGCACCAGCAGCAACAGCAGCAACAGCAGCTTTTGGCCGAAGCTGCTAATACGAATGCGCCTCTTTTTCATGGGTTACCTCCCAATCTCCTAAACTCCATGCAATTGCCGGCTGAAGCGGCATACTGGGCTACTGGCCGCCCTCCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

310

Amino Acids

33.16

Weight (kDa)

6.53

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	116 - 228	4.6e-25	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12050 AT4G22810
fragaria_vesca	FvH4_5g00910
malus_domestica	MD04G1077100.v1.1 MD06G1067800.v1.1
prunus_persica	Prupe.5G082200_v2.0.a1
pyrus_communis	pycom04g06790 pycom06g06490
rosa_chinensis	RchiOBHm_Chr7g0200471
rosa_laevigata	RLG00000003723
rosa_multiflora	Rmu_sc0000617.1_g000026
rosa_rugosa	Rorug07G0060400
rosa_samantha	Rh7AG186000 Rh7DG190100
rosa_wichuraiana	Rw7G016310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	574, 601
Acc36I	ACCTGC	2 cut(s)	574, 601
AccB1I	GGYRCC	1 cut(s)	414
AccBSI	CCGCTC	2 cut(s)	441, 700
AccII	CGCG	1 cut(s)	572
AclWI	GGATC	3 cut(s)	256, 282, 295
AcoI	YGGCCR	3 cut(s)	511, 816, 916
AcuI	CTGAAG	1 cut(s)	915
AcyI	GRCGYC	2 cut(s)	415, 482
AfiI	CCNNNNNNNGG	5 cut(s)	151, 493, 576, 699, 740
AluBI	AGCT	3 cut(s)	223, 811, 824
AluI	AGCT	3 cut(s)	223, 811, 824
Alw26I	GTCTC	1 cut(s)	762
AlwI	GGATC	3 cut(s)	256, 282, 295
Ama87I	CYCGRG	2 cut(s)	324, 487
AoxI	GGCC	5 cut(s)	142, 278, 511, 816, 916
AspLEI	GCGC	2 cut(s)	417, 841
AspS9I	GGNCC	3 cut(s)	279, 540, 653
AsuC2I	CCSGG	4 cut(s)	241, 488, 489, 741
AsuHPI	GGTGA	3 cut(s)	47, 218, 673
AvaI	CYCGRG	2 cut(s)	324, 487
AvaII	GGWCC	2 cut(s)	540, 653
BamHI	GGATCC	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	494
BbsI	GAAGAC	2 cut(s)	126, 271
BccI	CCATC	4 cut(s)	60, 239, 320, 365
BceAI	ACGGC	1 cut(s)	526
BcgI	CGANNNNNNTGC	2 cut(s)	718, 752
BclI	TGATCA	1 cut(s)	663
BcnI	CCSGG	4 cut(s)	241, 488, 489, 741
BcoDI	GTCTC	1 cut(s)	762
BfaI	CTAG	3 cut(s)	36, 270, 533
BfoI	RGCGCY	1 cut(s)	418
BfuAI	ACCTGC	2 cut(s)	574, 601
BglII	AGATCT	1 cut(s)	522
Bme1390I	CCNGG	4 cut(s)	241, 488, 489, 741
Bme18I	GGWCC	2 cut(s)	540, 653
BmeT110I	CYCGRG	2 cut(s)	324, 487
BmgT120I	GGNCC	3 cut(s)	279, 540, 653
BmiI	GGNNCC	5 cut(s)	157, 289, 416, 541, 654
BmrFI	CCNGG	4 cut(s)	241, 488, 489, 741
BmrI	ACTGGG	2 cut(s)	585, 916
BmsI	GCATC	2 cut(s)	82, 720
BmuI	ACTGGG	2 cut(s)	585, 916
BpiI	GAAGAC	2 cut(s)	126, 271
BpmI	CTGGAG	2 cut(s)	540, 731
BpuMI	CCSGG	4 cut(s)	241, 488, 489, 741
BsaHI	GRCGYC	2 cut(s)	415, 482
BsaI	GGTCTC	1 cut(s)	762
BsaJI	CCNNGG	3 cut(s)	240, 486, 487
BsaWI	WCCGGW	2 cut(s)	131, 655
BsaXI	ACNNNNNCTCC	2 cut(s)	612, 642
Bsc4I	CCNNNNNNNGG	5 cut(s)	151, 493, 576, 699, 740
Bse118I	RCCGGY	2 cut(s)	478, 889
Bse1I	ACTGG	5 cut(s)	91, 580, 714, 911, 919
BseDI	CCNNGG	3 cut(s)	240, 486, 487
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	5 cut(s)	151, 493, 576, 699, 740
BseMII	CTCAG	1 cut(s)	484
BseNI	ACTGG	5 cut(s)	91, 580, 714, 911, 919
BseRI	GAGGAG	2 cut(s)	438, 728
BseX3I	CGGCCG	1 cut(s)	511
Bsh1236I	CGCG	1 cut(s)	572
Bsh1285I	CGRYCG	2 cut(s)	498, 514
BshFI	GGCC	5 cut(s)	144, 280, 513, 818, 918
BshNI	GGYRCC	1 cut(s)	414
BsiEI	CGRYCG	2 cut(s)	498, 514
BsiHKCI	CYCGRG	2 cut(s)	324, 487
BsiSI	CCGG	8 cut(s)	132, 240, 285, 479, 488, 656, 740, 890
BslFI	GGGAC	3 cut(s)	463, 469, 649
BslI	CCNNNNNNNGG	5 cut(s)	151, 493, 576, 699, 740
BsmAI	GTCTC	1 cut(s)	762
BsmFI	GGGAC	3 cut(s)	463, 469, 649
BsmI	GAATGC	1 cut(s)	841
BsnI	GGCC	5 cut(s)	144, 280, 513, 818, 918
Bso31I	GGTCTC	1 cut(s)	762
BsoBI	CYCGRG	2 cut(s)	324, 487
Bsp1286I	GDGCHC	1 cut(s)	494
Bsp143I	GATC	4 cut(s)	248, 287, 522, 663
BspANI	GGCC	5 cut(s)	144, 280, 513, 818, 918
BspCNI	CTCAG	1 cut(s)	483
BspFNI	CGCG	1 cut(s)	572
BspLI	GGNNCC	5 cut(s)	157, 289, 416, 541, 654
BspMI	ACCTGC	2 cut(s)	574, 601
BspPI	GGATC	3 cut(s)	256, 282, 295
BspT107I	GGYRCC	1 cut(s)	414
BspTNI	GGTCTC	1 cut(s)	762
BsrBI	CCGCTC	2 cut(s)	441, 700
BsrFI	RCCGGY	2 cut(s)	478, 889
BsrI	ACTGG	5 cut(s)	91, 580, 714, 911, 919
BssAI	RCCGGY	2 cut(s)	478, 889
BssECI	CCNNGG	3 cut(s)	240, 486, 487
BssMI	GATC	4 cut(s)	248, 287, 522, 663
BssNI	GRCGYC	2 cut(s)	415, 482
Bst4CI	ACNGT	3 cut(s)	194, 235, 454
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	2 cut(s)	415, 482
BstC8I	GCNNGC	7 cut(s)	278, 282, 409, 413, 598, 602, 891
BstDEI	CTNAG	1 cut(s)	470
BstEII	GGTNACC	2 cut(s)	454, 855
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	1 cut(s)	572
BstH2I	RGCGCY	1 cut(s)	418
BstHHI	GCGC	2 cut(s)	417, 841
BstKTI	GATC	4 cut(s)	251, 290, 525, 666
BstMAI	GTCTC	1 cut(s)	762
BstMBI	GATC	4 cut(s)	248, 287, 522, 663
BstMCI	CGRYCG	2 cut(s)	498, 514
BstPI	GGTNACC	2 cut(s)	454, 855
BstSCI	CCNGG	4 cut(s)	239, 486, 487, 739
BstUI	CGCG	1 cut(s)	572
BstV2I	GAAGAC	2 cut(s)	126, 271
BstX2I	RGATCY	2 cut(s)	287, 522
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstYI	RGATCY	2 cut(s)	287, 522
BstZI	CGGCCG	1 cut(s)	511
BsuRI	GGCC	5 cut(s)	144, 280, 513, 818, 918
BtgZI	GCGATG	1 cut(s)	743
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	3 cut(s)	199, 231, 707
BveI	ACCTGC	2 cut(s)	574, 601
Cac8I	GCNNGC	7 cut(s)	278, 282, 409, 413, 598, 602, 891
CfoI	GCGC	2 cut(s)	417, 841
Cfr10I	RCCGGY	2 cut(s)	478, 889
Cfr13I	GGNCC	3 cut(s)	279, 540, 653
Cfr9I	CCCGGG	1 cut(s)	487
CseI	GACGC	1 cut(s)	471
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviAII	CATG	5 cut(s)	353, 358, 667, 851, 880
DdeI	CTNAG	1 cut(s)	470
DinI	GGCGCC	1 cut(s)	416
DpnI	GATC	4 cut(s)	250, 289, 524, 665
DpnII	GATC	4 cut(s)	248, 287, 522, 663
EaeI	YGGCCR	3 cut(s)	511, 816, 916
EagI	CGGCCG	1 cut(s)	511
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EclXI	CGGCCG	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	494
Eco31I	GGTCTC	1 cut(s)	762
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	2 cut(s)	540, 653
Eco52I	CGGCCG	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	915
Eco88I	CYCGRG	2 cut(s)	324, 487
Eco91I	GGTNACC	2 cut(s)	454, 855
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	540
EcoO65I	GGTNACC	2 cut(s)	454, 855
EcoRV	GATATC	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	494
EgeI	GGCGCC	1 cut(s)	416
EheI	GGCGCC	1 cut(s)	416
FaeI	CATG	5 cut(s)	356, 361, 670, 854, 883
FaiI	YATR	9 cut(s)	354, 359, 383, 437, 668, 752, 852, 881, 904
FaqI	GGGAC	3 cut(s)	463, 469, 649
FatI	CATG	5 cut(s)	352, 357, 666, 850, 879
FauI	CCCGC	2 cut(s)	289, 593
FbaI	TGATCA	1 cut(s)	663
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	494
FspBI	CTAG	3 cut(s)	36, 270, 533
GlaI	GCGC	2 cut(s)	416, 840
GsuI	CTGGAG	2 cut(s)	540, 731
HaeII	RGCGCY	1 cut(s)	418
HaeIII	GGCC	5 cut(s)	144, 280, 513, 818, 918
HapII	CCGG	8 cut(s)	132, 240, 285, 479, 488, 656, 740, 890
HgaI	GACGC	1 cut(s)	471
HhaI	GCGC	2 cut(s)	417, 841
Hin1I	GRCGYC	2 cut(s)	415, 482
Hin1II	CATG	5 cut(s)	356, 361, 670, 854, 883
Hin6I	GCGC	2 cut(s)	415, 839
HinP1I	GCGC	2 cut(s)	415, 839
HincII	GTYRAC	2 cut(s)	582, 776
HindII	GTYRAC	2 cut(s)	582, 776
HinfI	GANTC	2 cut(s)	426, 637
HpaII	CCGG	8 cut(s)	132, 240, 285, 479, 488, 656, 740, 890
HphI	GGTGA	3 cut(s)	47, 218, 673
Hpy166II	GTNNAC	2 cut(s)	582, 776
Hpy188I	TCNGA	3 cut(s)	118, 253, 473
Hpy188III	TCNNGA	2 cut(s)	326, 499
Hpy8I	GTNNAC	2 cut(s)	582, 776
HpyAV	CCTTC	2 cut(s)	203, 553
HpyCH4III	ACNGT	3 cut(s)	194, 235, 454
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	2 cut(s)	432, 883
HpyF3I	CTNAG	1 cut(s)	470
HpySE526I	ACGT	1 cut(s)	462
Hsp92I	GRCGYC	2 cut(s)	415, 482
Hsp92II	CATG	5 cut(s)	356, 361, 670, 854, 883
HspAI	GCGC	2 cut(s)	415, 839
KasI	GGCGCC	1 cut(s)	414
KroI	GCCGGC	1 cut(s)	889
KroNI	GCCGGC	1 cut(s)	891
Ksp22I	TGATCA	1 cut(s)	663
Kzo9I	GATC	4 cut(s)	248, 287, 522, 663
LweI	GCATC	2 cut(s)	82, 720
MaeI	CTAG	3 cut(s)	36, 270, 533
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	5 cut(s)	454, 463, 499, 528, 855
MalI	GATC	4 cut(s)	250, 289, 524, 665
MbiI	CCGCTC	2 cut(s)	441, 700
MboI	GATC	4 cut(s)	248, 287, 522, 663
MboII	GAAGA	3 cut(s)	8, 131, 276
MfeI	CAATTG	1 cut(s)	884
MflI	RGATCY	2 cut(s)	287, 522
MhlI	GDGCHC	1 cut(s)	494
MluCI	AATT	1 cut(s)	884
Mly113I	GGCGCC	1 cut(s)	415
MlyI	GAGTC	2 cut(s)	435, 631
MmeI	TCCRAC	2 cut(s)	70, 785
MroNI	GCCGGC	1 cut(s)	889
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	8 cut(s)	132, 240, 285, 479, 488, 656, 740, 890
MspR9I	CCNGG	4 cut(s)	241, 488, 489, 741
MunI	CAATTG	1 cut(s)	884
Mva1269I	GAATGC	1 cut(s)	841
MvnI	CGCG	1 cut(s)	572
NaeI	GCCGGC	1 cut(s)	891
NarI	GGCGCC	1 cut(s)	415
NciI	CCSGG	4 cut(s)	241, 488, 489, 741
NdeII	GATC	4 cut(s)	248, 287, 522, 663
NgoMIV	GCCGGC	1 cut(s)	889
NlaIII	CATG	5 cut(s)	356, 361, 670, 854, 883
NlaIV	GGNNCC	5 cut(s)	157, 289, 416, 541, 654
NmuCI	GTSAC	2 cut(s)	499, 528
PaeR7I	CTCGAG	1 cut(s)	324
PaqCI	CACCTGC	2 cut(s)	574, 601
PcsI	WCGNNNNNNNCGW	1 cut(s)	693
PctI	GAATGC	1 cut(s)	841
PdiI	GCCGGC	1 cut(s)	891
PleI	GAGTC	2 cut(s)	434, 631
PluTI	GGCGCC	1 cut(s)	418
PpsI	GAGTC	2 cut(s)	434, 631
PpuMI	RGGWCCY	1 cut(s)	540
Psp5II	RGGWCCY	1 cut(s)	540
PspEI	GGTNACC	2 cut(s)	454, 855
PspN4I	GGNNCC	5 cut(s)	157, 289, 416, 541, 654
PspPI	GGNCC	3 cut(s)	279, 540, 653
PspPPI	RGGWCCY	1 cut(s)	540
PsuI	RGATCY	2 cut(s)	287, 522
Sau3AI	GATC	4 cut(s)	248, 287, 522, 663
Sau96I	GGNCC	3 cut(s)	279, 540, 653
SchI	GAGTC	2 cut(s)	435, 631
ScrFI	CCNGG	4 cut(s)	241, 488, 489, 741
SduI	GDGCHC	1 cut(s)	494
SfaNI	GCATC	2 cut(s)	82, 720
SfoI	GGCGCC	1 cut(s)	416
Sfr274I	CTCGAG	1 cut(s)	324
SinI	GGWCC	2 cut(s)	540, 653
SlaI	CTCGAG	1 cut(s)	324
SmaI	CCCGGG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
Sse9I	AATT	1 cut(s)	884
SspDI	GGCGCC	1 cut(s)	414
SspMI	CTAG	3 cut(s)	36, 270, 533
StyD4I	CCNGG	4 cut(s)	239, 486, 487, 739
TaaI	ACNGT	3 cut(s)	194, 235, 454
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	2 cut(s)	177, 325
TaqII	GACCGA	1 cut(s)	484
TasI	AATT	1 cut(s)	884
TauI	GCSGC	8 cut(s)	144, 310, 444, 572, 692, 703, 902, 921
TscAI	CASTG	3 cut(s)	199, 238, 714
TseFI	GTSAC	2 cut(s)	499, 528
Tsp45I	GTSAC	2 cut(s)	499, 528
TspDTI	ATGAA	1 cut(s)	839
TspMI	CCCGGG	1 cut(s)	487
TspRI	CASTG	3 cut(s)	199, 238, 714
VpaK11BI	GGWCC	2 cut(s)	540, 653
XagI	CCTNNNNNAGG	1 cut(s)	149
XhoI	CTCGAG	1 cut(s)	324
XmaI	CCCGGG	1 cut(s)	487
XspI	CTAG	3 cut(s)	36, 270, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.