Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015819

Physical Location & Seq

Genomic Coordinates Forward (+)

11983974 .. 11986016

Gene Structure 2043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGATCCAGTACAATCTCATGGATCACAAAGCTCTCTACCTCCTCCTTTCCACGCAAGAGACTTTCAATTACATCTTCAACAACAGCAACAAGAGTTCTTCCTCCACCATCACCAGCAACAAAGAAACCAAACCGATGGTGACCAACAAGGAGGATCAGGAGGAAACCGACAAATCAAGATGGATCGTGAAGAGACAAGCGACAACATAGACAACATAGCTAACAACAGCGGTAGTGAAGGTAAAGACATAGATATACACGGTGGTTCAGGAGAAGGAGGTGGTGGCTCCGGAGGAGATCATCAGATGACAAGAAGACCAAGAGGAAGACCAGCGGGATCCAAGAACAAACCAAAACCACCGATTATCATCACACGGGACAGCGCAAACGCGCTTAGAACCCACGTGATGGAGATCGGAGATGGCTGCGACTTAGTCGAAAGCGTTGCCACTTTTGCACGAAGACGCCAACGCGGCGTTTGCGTTATGAGCGGTACTGGAAATGTTACTAACGTCACTATACGTCAGCCTGGATCTCATCCTTCTCCTGGCTCGGTAGTTAGTCTTCACGGAAGGTTCGAGATTCTATCTCTCTCAGGATCTTTTCTCCCTCCTCCGGCTCCTCCTACAGCCACCGGATTGAGTGTTTACCTCGCTGGAGGACAAGGACAGGTGGTTGGAGGAAGCGTAGTTGGTCCGTTGTTATGTGCTGGTCCTGTCGTTGTCATGGCTGCGTCTTTTAGCAATGCGGCGTACGAAAGGTTGCCTTTAGAGGAAGATGAGATGCAGACGCCGGTTCATGGCGGAGGAGGAGGAGGATCATTGGAGTCGCCGCCAATGATGGGACAACAACTGCAACATCAGCAACAAGCTATGTCAGGTCATCAAGGGTTACCACCTAATCTTCTTGGTTCGGTTCAGTTGCAGCAGCAACATGATCAGTCTTATTGGTCAACGGGACGACCACCGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019899 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

324

Amino Acids

34.34

Weight (kDa)

6.29

Isoelectric Point (pI)

63.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	133 - 248	3.7e-24	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12050 AT4G22810
fragaria_vesca	FvH4_5g00910
malus_domestica	MD04G1077100.v1.1 MD06G1067800.v1.1
prunus_persica	Prupe.5G082200_v2.0.a1
pyrus_communis	pycom04g06790 pycom06g06490
rosa_chinensis	RchiOBHm_Chr7g0200471
rosa_laevigata	RLG00000003723
rosa_multiflora	Rmu_sc0000617.1_g000026
rosa_rugosa	Rorug07G0060400
rosa_samantha	Rh7AG186000 Rh7DG190100
rosa_wichuraiana	Rw7G016310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	409
AccBSI	CCGCTC	1 cut(s)	492
AccII	CGCG	2 cut(s)	392, 474
AccIII	TCCGGA	1 cut(s)	290
AciI	CCGC	7 cut(s)	231, 335, 474, 492, 749, 804, 833
AclWI	GGATC	9 cut(s)	12, 31, 163, 192, 333, 346, 541, 607, 826
AcvI	CACGTG	1 cut(s)	406
AcyI	GRCGYC	2 cut(s)	466, 791
AfaI	GTAC	3 cut(s)	12, 496, 755
AfiI	CCNNNNNNNGG	5 cut(s)	409, 548, 616, 800, 842
AgsI	TTSAA	2 cut(s)	68, 80
AjnI	CCWGG	2 cut(s)	529, 547
AluBI	AGCT	3 cut(s)	33, 221, 872
AluI	AGCT	3 cut(s)	33, 221, 872
Alw26I	GTCTC	2 cut(s)	54, 188
AlwI	GGATC	9 cut(s)	12, 31, 163, 192, 333, 346, 541, 607, 826
Aor13HI	TCCGGA	1 cut(s)	290
ApeKI	GCWGC	4 cut(s)	426, 731, 925, 928
AspLEI	GCGC	2 cut(s)	386, 394
AspS9I	GGNCC	2 cut(s)	695, 713
AsuHPI	GGTGA	2 cut(s)	104, 152
AvaII	GGWCC	2 cut(s)	695, 713
BamHI	GGATCC	2 cut(s)	4, 338
BarI	GAAGNNNNNNTAC	2 cut(s)	549, 581
BbrPI	CACGTG	1 cut(s)	406
BbsI	GAAGAC	4 cut(s)	322, 334, 469, 557
BbvI	GCAGC	4 cut(s)	413, 718, 937, 940
BccI	CCATC	6 cut(s)	117, 131, 175, 403, 416, 835
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciT130I	CCWGG	2 cut(s)	531, 549
BclI	TGATCA	1 cut(s)	937
BcoDI	GTCTC	2 cut(s)	54, 188
BfmI	CTRYAG	1 cut(s)	627
BglI	GCCNNNNNGGC	1 cut(s)	474
BisI	GCNGC	7 cut(s)	427, 475, 732, 750, 833, 926, 929
BlsI	GCNGC	7 cut(s)	428, 476, 733, 751, 834, 927, 930
Bme1390I	CCNGG	2 cut(s)	531, 549
Bme18I	GGWCC	2 cut(s)	695, 713
BmgT120I	GGNCC	2 cut(s)	695, 713
BmiI	GGNNCC	4 cut(s)	6, 289, 340, 621
BmrFI	CCNGG	2 cut(s)	531, 549
BmsI	GCATC	1 cut(s)	774
BpiI	GAAGAC	4 cut(s)	322, 334, 469, 557
BpmI	CTGGAG	1 cut(s)	678
BsaAI	YACGTR	1 cut(s)	406
BsaBI	GATNNNNATC	2 cut(s)	368, 413
BsaHI	GRCGYC	2 cut(s)	466, 791
BsaWI	WCCGGW	2 cut(s)	290, 635
BsaXI	ACNNNNNCTCC	2 cut(s)	672, 702
Bsc4I	CCNNNNNNNGG	5 cut(s)	409, 548, 616, 800, 842
Bse118I	RCCGGY	1 cut(s)	793
Bse1I	ACTGG	2 cut(s)	8, 502
Bse3DI	GCAATG	1 cut(s)	751
Bse8I	GATNNNNATC	2 cut(s)	368, 413
BseAI	TCCGGA	1 cut(s)	290
BseBI	CCWGG	2 cut(s)	531, 549
BseGI	GGATG	1 cut(s)	538
BseJI	GATNNNNATC	2 cut(s)	368, 413
BseLI	CCNNNNNNNGG	5 cut(s)	409, 548, 616, 800, 842
BseMI	GCAATG	1 cut(s)	751
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	2 cut(s)	8, 502
BseRI	GAGGAG	7 cut(s)	33, 309, 603, 612, 822, 825, 828
BseXI	GCAGC	4 cut(s)	413, 718, 937, 940
Bsh1236I	CGCG	2 cut(s)	392, 474
BsiSI	CCGG	4 cut(s)	291, 617, 636, 794
BsiWI	CGTACG	1 cut(s)	753
BslFI	GGGAC	2 cut(s)	392, 858
BslI	CCNNNNNNNGG	5 cut(s)	409, 548, 616, 800, 842
BsmAI	GTCTC	2 cut(s)	54, 188
BsmFI	GGGAC	2 cut(s)	392, 858
Bsp13I	TCCGGA	1 cut(s)	290
BspACI	CCGC	7 cut(s)	231, 335, 474, 492, 749, 804, 833
BspCNI	CTCAG	1 cut(s)	608
BspEI	TCCGGA	1 cut(s)	290
BspFNI	CGCG	2 cut(s)	392, 474
BspLI	GGNNCC	4 cut(s)	6, 289, 340, 621
BspPI	GGATC	9 cut(s)	12, 31, 163, 192, 333, 346, 541, 607, 826
BsrBI	CCGCTC	1 cut(s)	492
BsrDI	GCAATG	1 cut(s)	751
BsrFI	RCCGGY	1 cut(s)	793
BsrI	ACTGG	2 cut(s)	8, 502
BssAI	RCCGGY	1 cut(s)	793
BssNI	GRCGYC	2 cut(s)	466, 791
Bst2UI	CCWGG	2 cut(s)	531, 549
Bst4CI	ACNGT	2 cut(s)	263, 969
Bst6I	CTCTTC	1 cut(s)	186
BstACI	GRCGYC	2 cut(s)	466, 791
BstBAI	YACGTR	1 cut(s)	406
BstDEI	CTNAG	3 cut(s)	395, 433, 595
BstEII	GGTNACC	2 cut(s)	140, 891
BstF5I	GGATG	1 cut(s)	538
BstFNI	CGCG	2 cut(s)	392, 474
BstHHI	GCGC	2 cut(s)	386, 394
BstMAI	GTCTC	2 cut(s)	54, 188
BstMWI	GCNNNNNNNGC	5 cut(s)	455, 474, 480, 489, 862
BstNI	CCWGG	2 cut(s)	531, 549
BstPI	GGTNACC	2 cut(s)	140, 891
BstSCI	CCNGG	2 cut(s)	529, 547
BstSFI	CTRYAG	1 cut(s)	627
BstUI	CGCG	2 cut(s)	392, 474
BstV1I	GCAGC	4 cut(s)	413, 718, 937, 940
BstV2I	GAAGAC	4 cut(s)	322, 334, 469, 557
BstX2I	RGATCY	4 cut(s)	4, 338, 533, 599
BstXI	CCANNNNNNTGG	1 cut(s)	137
BstYI	RGATCY	4 cut(s)	4, 338, 533, 599
BtsCI	GGATG	1 cut(s)	538
CfoI	GCGC	2 cut(s)	386, 394
Cfr10I	RCCGGY	1 cut(s)	793
Cfr13I	GGNCC	2 cut(s)	695, 713
CseI	GACGC	3 cut(s)	474, 723, 799
Csp6I	GTAC	3 cut(s)	11, 495, 754
CviAII	CATG	4 cut(s)	20, 727, 800, 935
CviQI	GTAC	3 cut(s)	11, 495, 754
DdeI	CTNAG	3 cut(s)	395, 433, 595
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
EciI	GGCGGA	1 cut(s)	819
Eco47I	GGWCC	2 cut(s)	695, 713
Eco72I	CACGTG	1 cut(s)	406
Eco91I	GGTNACC	2 cut(s)	140, 891
EcoO65I	GGTNACC	2 cut(s)	140, 891
EcoRII	CCWGG	2 cut(s)	529, 547
FaeI	CATG	4 cut(s)	23, 730, 803, 938
FalI	AAGNNNNNCTT	2 cut(s)	751, 783
FaqI	GGGAC	2 cut(s)	392, 858
FatI	CATG	4 cut(s)	19, 726, 799, 934
FauI	CCCGC	1 cut(s)	328
FbaI	TGATCA	1 cut(s)	937
Fnu4HI	GCNGC	7 cut(s)	427, 475, 732, 750, 833, 926, 929
FokI	GGATG	1 cut(s)	525
Fsp4HI	GCNGC	7 cut(s)	427, 475, 732, 750, 833, 926, 929
GlaI	GCGC	2 cut(s)	385, 393
GluI	GCNGC	7 cut(s)	427, 475, 732, 750, 833, 926, 929
GsuI	CTGGAG	1 cut(s)	678
HapII	CCGG	4 cut(s)	291, 617, 636, 794
HgaI	GACGC	3 cut(s)	474, 723, 799
HhaI	GCGC	2 cut(s)	386, 394
Hin1I	GRCGYC	2 cut(s)	466, 791
Hin1II	CATG	4 cut(s)	23, 730, 803, 938
Hin6I	GCGC	2 cut(s)	384, 392
HinP1I	GCGC	2 cut(s)	384, 392
HincII	GTYRAC	1 cut(s)	954
HindII	GTYRAC	1 cut(s)	954
HinfI	GANTC	2 cut(s)	583, 827
HpaII	CCGG	4 cut(s)	291, 617, 636, 794
HphI	GGTGA	2 cut(s)	104, 152
Hpy166II	GTNNAC	2 cut(s)	649, 954
Hpy188I	TCNGA	2 cut(s)	306, 419
Hpy188III	TCNNGA	7 cut(s)	159, 178, 188, 270, 291, 580, 597
Hpy8I	GTNNAC	2 cut(s)	649, 954
HpyAV	CCTTC	4 cut(s)	233, 269, 552, 567
HpyCH4III	ACNGT	2 cut(s)	263, 969
HpyCH4IV	ACGT	3 cut(s)	405, 513, 523
HpyCH4V	TGCA	4 cut(s)	458, 787, 856, 925
HpyF10VI	GCNNNNNNNGC	5 cut(s)	455, 474, 480, 489, 862
HpyF3I	CTNAG	3 cut(s)	395, 433, 595
HpySE526I	ACGT	3 cut(s)	405, 513, 523
Hsp92I	GRCGYC	2 cut(s)	466, 791
Hsp92II	CATG	4 cut(s)	23, 730, 803, 938
HspAI	GCGC	2 cut(s)	384, 392
Kpn2I	TCCGGA	1 cut(s)	290
Ksp22I	TGATCA	1 cut(s)	937
LmnI	GCTCC	2 cut(s)	293, 625
Lsp1109I	GCAGC	4 cut(s)	413, 718, 937, 940
LweI	GCATC	1 cut(s)	774
MaeII	ACGT	3 cut(s)	405, 513, 523
MaeIII	GTNAC	4 cut(s)	140, 505, 514, 891
MbiI	CCGCTC	1 cut(s)	492
MboII	GAAGA	9 cut(s)	68, 91, 203, 327, 339, 474, 557, 788, 896
MflI	RGATCY	4 cut(s)	4, 338, 533, 599
MluCI	AATT	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	836
MmeI	TCCRAC	1 cut(s)	658
MroI	TCCGGA	1 cut(s)	290
MspA1I	CMGCKG	2 cut(s)	231, 335
MspI	CCGG	4 cut(s)	291, 617, 636, 794
MspR9I	CCNGG	2 cut(s)	531, 549
MvaI	CCWGG	2 cut(s)	531, 549
MvnI	CGCG	2 cut(s)	392, 474
MwoI	GCNNNNNNNGC	5 cut(s)	455, 474, 480, 489, 862
NlaIII	CATG	4 cut(s)	23, 730, 803, 938
NlaIV	GGNNCC	4 cut(s)	6, 289, 340, 621
NmuCI	GTSAC	2 cut(s)	140, 514
PcsI	WCGNNNNNNNCGW	1 cut(s)	576
PfeI	GAWTC	1 cut(s)	583
Pfl23II	CGTACG	1 cut(s)	753
PflFI	GACNNNGTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	409
PkrI	GCNGC	7 cut(s)	428, 476, 733, 751, 834, 927, 930
PleI	GAGTC	1 cut(s)	835
PmaCI	CACGTG	1 cut(s)	406
PmlI	CACGTG	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	835
Ppu21I	YACGTR	1 cut(s)	406
Psp6I	CCWGG	2 cut(s)	529, 547
PspCI	CACGTG	1 cut(s)	406
PspEI	GGTNACC	2 cut(s)	140, 891
PspGI	CCWGG	2 cut(s)	529, 547
PspLI	CGTACG	1 cut(s)	753
PspN4I	GGNNCC	4 cut(s)	6, 289, 340, 621
PspPI	GGNCC	2 cut(s)	695, 713
PsuI	RGATCY	4 cut(s)	4, 338, 533, 599
PsyI	GACNNNGTC	1 cut(s)	434
RsaI	GTAC	3 cut(s)	12, 496, 755
RsaNI	GTAC	3 cut(s)	11, 495, 754
SatI	GCNGC	7 cut(s)	427, 475, 732, 750, 833, 926, 929
Sau96I	GGNCC	2 cut(s)	695, 713
SchI	GAGTC	1 cut(s)	836
ScrFI	CCNGG	2 cut(s)	531, 549
SfaNI	GCATC	1 cut(s)	774
SfcI	CTRYAG	1 cut(s)	627
SinI	GGWCC	2 cut(s)	695, 713
Sse9I	AATT	1 cut(s)	68
SsiI	CCGC	7 cut(s)	231, 335, 474, 492, 749, 804, 833
StyD4I	CCNGG	2 cut(s)	529, 547
TaaI	ACNGT	2 cut(s)	263, 969
TaiI	ACGT	3 cut(s)	408, 516, 526
TaqI	TCGA	2 cut(s)	438, 579
TasI	AATT	1 cut(s)	68
TatI	WGTACW	1 cut(s)	10
TauI	GCSGC	3 cut(s)	477, 752, 835
TfiI	GAWTC	1 cut(s)	583
TseFI	GTSAC	2 cut(s)	140, 514
TseI	GCWGC	4 cut(s)	426, 731, 925, 928
Tsp45I	GTSAC	2 cut(s)	140, 514
TspDTI	ATGAA	1 cut(s)	788
TspGWI	ACGGA	2 cut(s)	585, 687
Tth111I	GACNNNGTC	1 cut(s)	434
Van91I	CCANNNNNTGG	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	695, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.