Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013944

Physical Location & Seq

Genomic Coordinates Forward (+)

7239200 .. 7241675

Gene Structure 2476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G12080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGTCTTAAATATGGAGTCTACCGGAGAAGCTGTTAGATCAACCACCGGTAACGACGGTGGTATTACGGTGGTTAGATCCGACGCGCCGTCAGATTTCCACGTAGCTCAAAGATCAGAAAGCTCAAACCAATCTCCCACCTCTGTCACTCCTCCTCCACCACAGCCATCGTCTCATCACACAGCTCCTCCGCCGCTGCAAATTTCGACGGTGACGACTACGACTACGACGGCCGCGATGGAAGGTATCTCCGGTGGACTGATGAAGAAGAAGCGTGGACGGCCAAGGAAGTATGGACCGGACGGGACTGTTGTAGCGTTATCTCCTAAACCGATTTCATCAGCGCCGGCGCCGTCGCATCTTCCGCCGCCGAGTTCACACGTCATCGATTTCTCCGCTTCTGAGAAACGTAGCAAAGTGAAACCAACGAACTCGTTTAACAGAACAAAGTATCATCACCAAGTTGAGAATTTGGGTGAATGGGCTCCTTGCTCCGTCGGTGGTAATTTCACACCTCATATAATCACAGTCAACACCGGCGAGGATGTAACAATGAAGATAATCTCGTTTTCGCAACAAGGACCTCGCTCTATTTGTGTTCTGTCAGCAAACGGTGTTATTTCAAGCGTTACACTTCGTCAGCCAGATTCCTCTGGCGGCACATTGACATACGAAGGTCGGTTTGAGATATTATCATTATCCGGGTCATTCATGCCTAATGATTCAGGCGGAACACGAAGTAGAACGGGAGGAATGAGTGTATCGTTAGCAAGTCCCGATGGACGTGTAGTAGGCGGTGGCCTCGCCGGTTTACTAGTAGCCGCGAGTCCGGTTCAGGTGGTTGTAGGAAGTTTTTTAGCGGGCACTGACCATCAAGATCAGAAACCGAAAAAGAACAAACATGATTTCATGTTGTCGAGTCCTACCGCTGCAATTCCTATCTCTAGTGCAGCTGATCACCGGACAATCCATTCGGTCTCGTCTCTTCCGGTCAATAATAATACATGGCAGACTTCTTTAGCTTCCGATCCAAGAAACAAGCATACCGATATTAATGTCAATGTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:0098687 GO:1901363 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

356

Amino Acids

37.31

Weight (kDa)

9.39

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	171 - 285	1.9e-26	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12080
fragaria_vesca	FvH4_5g00860
malus_domestica	MD00G1083100.v1.1 MD06G1063800.v1.1
prunus_persica	Prupe.5G081500_v2.0.a1
pyrus_communis	pycom04g06900 pycom06g06420
rosa_chinensis	RchiOBHm_Chr7g0201041
rosa_laevigata	RLG00000003696
rosa_multiflora	Rmu_sc0006553.1_g000014
rosa_roxburghii	Rroxscaffold_3G00255570
rosa_rugosa	Rorug07G0061700
rosa_samantha	Rh7AG187500 Rh7BG190800 Rh7CG198500 Rh7DG193100
rosa_wichuraiana	Rw7G016450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	20
AccII	CGCG	3 cut(s)	86, 236, 824
AclWI	GGATC	2 cut(s)	72, 1022
AcoI	YGGCCR	2 cut(s)	231, 281
AcsI	RAATTY	2 cut(s)	201, 469
AcyI	GRCGYC	1 cut(s)	350
AflIII	ACRYGT	2 cut(s)	379, 784
AgeI	ACCGGT	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	624
AhdI	GACNNNNNGTC	1 cut(s)	88
AhlI	ACTAGT	1 cut(s)	814
AjiI	CACGTC	2 cut(s)	382, 785
AluBI	AGCT	6 cut(s)	32, 107, 123, 185, 953, 1022
AluI	AGCT	6 cut(s)	32, 107, 123, 185, 953, 1022
Alw26I	GTCTC	3 cut(s)	177, 982, 987
AlwI	GGATC	2 cut(s)	72, 1022
AoxI	GGCC	3 cut(s)	231, 281, 799
ApeKI	GCWGC	3 cut(s)	196, 929, 950
ApoI	RAATTY	2 cut(s)	201, 469
ArsI	GACNNNNNNTTYG	2 cut(s)	955, 987
AseI	ATTAAT	1 cut(s)	1053
AsiGI	ACCGGT	1 cut(s)	47
AspLEI	GCGC	3 cut(s)	88, 346, 352
AspS9I	GGNCC	2 cut(s)	296, 581
AsuC2I	CCSGG	1 cut(s)	703
AsuHPI	GGTGA	4 cut(s)	223, 449, 488, 950
AvaII	GGWCC	2 cut(s)	296, 581
BaeGI	GKGCMC	1 cut(s)	866
BanI	GGYRCC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	487
BbvI	GCAGC	3 cut(s)	183, 916, 962
BccI	CCATC	4 cut(s)	175, 232, 773, 879
BceAI	ACGGC	4 cut(s)	73, 246, 296, 337
BclI	TGATCA	1 cut(s)	955
BcnI	CCSGG	1 cut(s)	703
BcoDI	GTCTC	3 cut(s)	177, 982, 987
BcuI	ACTAGT	1 cut(s)	814
BfaI	CTAG	2 cut(s)	815, 945
BfoI	RGCGCY	2 cut(s)	347, 353
BisI	GCNGC	8 cut(s)	194, 197, 234, 368, 658, 822, 930, 951
BlsI	GCNGC	8 cut(s)	195, 198, 235, 369, 659, 823, 931, 952
Bme1390I	CCNGG	1 cut(s)	703
Bme18I	GGWCC	2 cut(s)	296, 581
BmeRI	GACNNNNNGTC	1 cut(s)	88
BmgBI	CACGTC	2 cut(s)	382, 785
BmgT120I	GGNCC	2 cut(s)	296, 581
BmiI	GGNNCC	2 cut(s)	351, 486
BmrFI	CCNGG	1 cut(s)	703
BmsI	GCATC	1 cut(s)	367
BpuMI	CCSGG	1 cut(s)	703
Bsa29I	ATCGAT	1 cut(s)	387
BsaAI	YACGTR	1 cut(s)	103
BsaHI	GRCGYC	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	982
BsaJI	CCNNGG	1 cut(s)	284
BsaWI	WCCGGW	7 cut(s)	23, 47, 251, 298, 829, 960, 988
BsaXI	ACNNNNNCTCC	6 cut(s)	18, 48, 139, 169, 172, 202
Bse118I	RCCGGY	4 cut(s)	47, 346, 536, 806
BseCI	ATCGAT	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	284
BseGI	GGATG	1 cut(s)	550
BseMII	CTCAG	1 cut(s)	393
BseRI	GAGGAG	3 cut(s)	141, 144, 177
BseSI	GKGCMC	1 cut(s)	866
BseX3I	CGGCCG	1 cut(s)	231
BseXI	GCAGC	3 cut(s)	183, 916, 962
BsgI	GTGCAG	1 cut(s)	969
Bsh1236I	CGCG	3 cut(s)	86, 236, 824
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	233, 283, 801
BshNI	GGYRCC	1 cut(s)	349
BshTI	ACCGGT	1 cut(s)	47
BshVI	ATCGAT	1 cut(s)	387
BsiEI	CGRYCG	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	319, 759
BsmAI	GTCTC	3 cut(s)	177, 982, 987
BsmBI	CGTCTC	2 cut(s)	177, 987
BsmFI	GGGAC	2 cut(s)	319, 759
BsnI	GGCC	3 cut(s)	233, 283, 801
Bso31I	GGTCTC	1 cut(s)	982
Bsp1286I	GDGCHC	2 cut(s)	487, 866
Bsp143I	GATC	6 cut(s)	38, 77, 113, 877, 955, 1027
BspANI	GGCC	3 cut(s)	233, 283, 801
BspCNI	CTCAG	1 cut(s)	394
BspDI	ATCGAT	1 cut(s)	387
BspFNI	CGCG	3 cut(s)	86, 236, 824
BspLI	GGNNCC	2 cut(s)	351, 486
BspPI	GGATC	2 cut(s)	72, 1022
BspT107I	GGYRCC	1 cut(s)	349
BspTNI	GGTCTC	1 cut(s)	982
BsrFI	RCCGGY	4 cut(s)	47, 346, 536, 806
BssAI	RCCGGY	4 cut(s)	47, 346, 536, 806
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	6 cut(s)	38, 77, 113, 877, 955, 1027
BssNI	GRCGYC	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	284
Bst4CI	ACNGT	6 cut(s)	59, 70, 211, 310, 529, 614
Bst6I	CTCTTC	1 cut(s)	990
BstACI	GRCGYC	1 cut(s)	350
BstBAI	YACGTR	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	348, 862
BstDEI	CTNAG	1 cut(s)	402
BstF5I	GGATG	1 cut(s)	550
BstFNI	CGCG	3 cut(s)	86, 236, 824
BstH2I	RGCGCY	2 cut(s)	347, 353
BstHHI	GCGC	3 cut(s)	88, 346, 352
BstKTI	GATC	6 cut(s)	41, 80, 116, 880, 958, 1030
BstMAI	GTCTC	3 cut(s)	177, 982, 987
BstMBI	GATC	6 cut(s)	38, 77, 113, 877, 955, 1027
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 364
BstSCI	CCNGG	1 cut(s)	701
BstSLI	GKGCMC	1 cut(s)	866
BstUI	CGCG	3 cut(s)	86, 236, 824
BstV1I	GCAGC	3 cut(s)	183, 916, 962
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BstZI	CGGCCG	1 cut(s)	231
Bsu15I	ATCGAT	1 cut(s)	387
BsuRI	GGCC	3 cut(s)	233, 283, 801
BsuTUI	ATCGAT	1 cut(s)	387
BtgZI	GCGATG	1 cut(s)	251
BtrI	CACGTC	2 cut(s)	382, 785
BtsCI	GGATG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	864
Cac8I	GCNNGC	2 cut(s)	348, 862
CfoI	GCGC	3 cut(s)	88, 346, 352
Cfr10I	RCCGGY	4 cut(s)	47, 346, 536, 806
Cfr13I	GGNCC	2 cut(s)	296, 581
ClaI	ATCGAT	1 cut(s)	387
CseI	GACGC	1 cut(s)	92
CspAI	ACCGGT	1 cut(s)	47
CviAII	CATG	4 cut(s)	712, 902, 910, 1005
DdeI	CTNAG	1 cut(s)	402
DinI	GGCGCC	1 cut(s)	351
DpnI	GATC	6 cut(s)	40, 79, 115, 879, 957, 1029
DpnII	GATC	6 cut(s)	38, 77, 113, 877, 955, 1027
DriI	GACNNNNNGTC	1 cut(s)	88
EaeI	YGGCCR	2 cut(s)	231, 281
EagI	CGGCCG	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	990
Eam1105I	GACNNNNNGTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	990
EciI	GGCGGA	3 cut(s)	180, 354, 744
EclXI	CGGCCG	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	487
Eco31I	GGTCTC	1 cut(s)	982
Eco47I	GGWCC	2 cut(s)	296, 581
Eco52I	CGGCCG	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	581
EcoT14I	CCWWGG	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	487
EgeI	GGCGCC	1 cut(s)	351
EheI	GGCGCC	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	284
Esp3I	CGTCTC	2 cut(s)	177, 987
FaeI	CATG	4 cut(s)	715, 905, 913, 1008
FaqI	GGGAC	2 cut(s)	319, 759
FatI	CATG	4 cut(s)	711, 901, 909, 1004
FauI	CCCGC	1 cut(s)	853
FbaI	TGATCA	1 cut(s)	955
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	8 cut(s)	194, 197, 234, 368, 658, 822, 930, 951
FokI	GGATG	1 cut(s)	557
FriOI	GRGCYC	1 cut(s)	487
Fsp4HI	GCNGC	8 cut(s)	194, 197, 234, 368, 658, 822, 930, 951
FspBI	CTAG	2 cut(s)	815, 945
GlaI	GCGC	3 cut(s)	87, 345, 351
GluI	GCNGC	8 cut(s)	194, 197, 234, 368, 658, 822, 930, 951
HaeII	RGCGCY	2 cut(s)	347, 353
HaeIII	GGCC	3 cut(s)	233, 283, 801
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	3 cut(s)	88, 346, 352
Hin1I	GRCGYC	1 cut(s)	350
Hin1II	CATG	4 cut(s)	715, 905, 913, 1008
Hin6I	GCGC	3 cut(s)	86, 344, 350
HinP1I	GCGC	3 cut(s)	86, 344, 350
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	5 cut(s)	17, 647, 722, 826, 919
HphI	GGTGA	4 cut(s)	223, 449, 488, 950
Hpy166II	GTNNAC	6 cut(s)	21, 257, 278, 377, 532, 812
Hpy188I	TCNGA	6 cut(s)	82, 94, 118, 403, 882, 1027
Hpy188III	TCNNGA	2 cut(s)	776, 875
Hpy8I	GTNNAC	6 cut(s)	21, 257, 278, 377, 532, 812
Hpy99I	CGWCG	6 cut(s)	59, 86, 211, 232, 358, 500
HpyAV	CCTTC	2 cut(s)	236, 668
HpyCH4III	ACNGT	6 cut(s)	59, 70, 211, 310, 529, 614
HpyCH4IV	ACGT	4 cut(s)	102, 381, 409, 784
HpyCH4V	TGCA	3 cut(s)	199, 932, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 364
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	4 cut(s)	102, 381, 409, 784
Hsp92I	GRCGYC	1 cut(s)	350
Hsp92II	CATG	4 cut(s)	715, 905, 913, 1008
HspAI	GCGC	3 cut(s)	86, 344, 350
KasI	GGCGCC	1 cut(s)	349
KroI	GCCGGC	1 cut(s)	346
KroNI	GCCGGC	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	955
Kzo9I	GATC	6 cut(s)	38, 77, 113, 877, 955, 1027
LmnI	GCTCC	3 cut(s)	190, 490, 497
Lsp1109I	GCAGC	3 cut(s)	183, 916, 962
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	2 cut(s)	815, 945
MaeII	ACGT	4 cut(s)	102, 381, 409, 784
MaeIII	GTNAC	6 cut(s)	50, 145, 211, 547, 628, 1063
MalI	GATC	6 cut(s)	40, 79, 115, 879, 957, 1029
MboI	GATC	6 cut(s)	38, 77, 113, 877, 955, 1027
MboII	GAAGA	5 cut(s)	277, 280, 353, 568, 977
MflI	RGATCY	1 cut(s)	77
MhlI	GDGCHC	2 cut(s)	487, 866
MluCI	AATT	4 cut(s)	201, 469, 505, 933
Mly113I	GGCGCC	1 cut(s)	350
MlyI	GAGTC	3 cut(s)	26, 835, 928
MmeI	TCCRAC	1 cut(s)	105
MreI	CGCCGGCG	1 cut(s)	346
MroNI	GCCGGC	1 cut(s)	346
MseI	TTAA	3 cut(s)	8, 438, 1053
MspA1I	CMGCKG	3 cut(s)	196, 929, 953
MspR9I	CCNGG	1 cut(s)	703
MvnI	CGCG	3 cut(s)	86, 236, 824
MwoI	GCNNNNNNNGC	2 cut(s)	280, 364
NaeI	GCCGGC	1 cut(s)	348
NarI	GGCGCC	1 cut(s)	350
NciI	CCSGG	1 cut(s)	703
NdeII	GATC	6 cut(s)	38, 77, 113, 877, 955, 1027
NgoMIV	GCCGGC	1 cut(s)	346
NlaIII	CATG	4 cut(s)	715, 905, 913, 1008
NlaIV	GGNNCC	2 cut(s)	351, 486
NmeAIII	GCCGAG	1 cut(s)	396
NmuCI	GTSAC	2 cut(s)	145, 211
PcsI	WCGNNNNNNNCGW	2 cut(s)	212, 233
PdiI	GCCGGC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	647, 722
PinAI	ACCGGT	1 cut(s)	47
PkrI	GCNGC	8 cut(s)	195, 198, 235, 369, 659, 823, 931, 952
PleI	GAGTC	3 cut(s)	25, 834, 927
PluTI	GGCGCC	1 cut(s)	353
PpsI	GAGTC	3 cut(s)	25, 834, 927
Ppu21I	YACGTR	1 cut(s)	103
PpuMI	RGGWCCY	1 cut(s)	581
PshBI	ATTAAT	1 cut(s)	1053
Psp5II	RGGWCCY	1 cut(s)	581
PspN4I	GGNNCC	2 cut(s)	351, 486
PspPI	GGNCC	2 cut(s)	296, 581
PspPPI	RGGWCCY	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	953
SaqAI	TTAA	3 cut(s)	8, 438, 1053
SatI	GCNGC	8 cut(s)	194, 197, 234, 368, 658, 822, 930, 951
Sau3AI	GATC	6 cut(s)	38, 77, 113, 877, 955, 1027
Sau96I	GGNCC	2 cut(s)	296, 581
SchI	GAGTC	3 cut(s)	26, 835, 928
ScrFI	CCNGG	1 cut(s)	703
SduI	GDGCHC	2 cut(s)	487, 866
SfaNI	GCATC	1 cut(s)	367
SfoI	GGCGCC	1 cut(s)	351
SgrAI	CRCCGGYG	2 cut(s)	346, 536
SinI	GGWCC	2 cut(s)	296, 581
SpeI	ACTAGT	1 cut(s)	814
Sse9I	AATT	4 cut(s)	201, 469, 505, 933
SspDI	GGCGCC	1 cut(s)	349
SspMI	CTAG	2 cut(s)	815, 945
StyD4I	CCNGG	1 cut(s)	701
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	6 cut(s)	59, 70, 211, 310, 529, 614
TaiI	ACGT	4 cut(s)	105, 384, 412, 787
TaqI	TCGA	3 cut(s)	206, 387, 917
TaqII	GACCGA	1 cut(s)	964
TasI	AATT	4 cut(s)	201, 469, 505, 933
TauI	GCSGC	5 cut(s)	196, 236, 370, 660, 824
TfiI	GAWTC	2 cut(s)	647, 722
Tru1I	TTAA	3 cut(s)	8, 438, 1053
Tru9I	TTAA	3 cut(s)	8, 438, 1053
TscAI	CASTG	1 cut(s)	871
TseFI	GTSAC	2 cut(s)	145, 211
TseI	GCWGC	3 cut(s)	196, 929, 950
Tsp45I	GTSAC	2 cut(s)	145, 211
TspDTI	ATGAA	5 cut(s)	278, 327, 569, 700, 898
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	1 cut(s)	871
VpaK11BI	GGWCC	2 cut(s)	296, 581
VspI	ATTAAT	1 cut(s)	1053
XapI	RAATTY	2 cut(s)	201, 469
XmiI	GTMKAC	1 cut(s)	20
XspI	CTAG	2 cut(s)	815, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.