Rh7CG198500

Domain of unknown function (DUF296)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013944
Physical Location & Seq
Forward (+)
17619554 .. 17623503
3950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG198500.1

Sequence Viewer

Length: 672 bp
ATGGAGGGTAGGGAAGCTGTGAATACTAGTGGGGTTACAGTGGTGGGATCAGATGCTCCGTCAGACTACCACGTGGCTCCGAGGGCCGAAAACCCGGCCAATAACGCCGGATCAGCACCTGCGCCGCCGGTTGCTCCGCCTCCCGCGGCGGCGATGCCGGCGGGGGCGGGGTCCGTGGCGGTGAAGAAGAAGAGAGGGAGGCCGAGGAAGTATGGGCCAGATGGGAGCGTGACTATGGCGCTGTCACCGAAGCCGATATCGTCGGCGGCGCCGCCTCCGGTGATTGATTTCGCGGCGGAGAAGCAGCCGCGGGGGAAAGTGAAGCCGGCCAGCTCAGTGAGCAAGAACAAGTATGAGATGGAGAATTTAGGTGAATGGGTTGCATGCTCTGTTGGTGCTAATTTTACTCCTCATATCATCAATGTTAATTCTGGCGAGGTTGTAGTTGGCAGTTTTCTGGCGGGAAACCAGCATGAGCAGAAACCCAAGAAACAGAAACATGAATACATTTCTAATGCAACACCAACTATGGCTATTCCTGTTTCAAGTGCTGAACCAAAGACAAACCTCTCATCTTCGACTTCCTTCCGTGGTGATAATTGGTCTTCGTATCAATCCGATCATAAAAATAAGACTGACATTAATGTATCATTGCCTGGAGGTGTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

223

Amino Acids

23.21

Weight (kDa)

9.38

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013944)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12080
fragaria_vesca FvH4_5g00860
malus_domestica MD00G1083100.v1.1 MD06G1063800.v1.1
prunus_persica Prupe.5G081500_v2.0.a1
pyrus_communis pycom04g06900 pycom06g06420
rosa_chinensis RchiOBHm_Chr7g0201041
rosa_laevigata RLG00000003696
rosa_multiflora Rmu_sc0006553.1_g000014
rosa_roxburghii Rroxscaffold_3G00255570
rosa_rugosa Rorug07G0061700
rosa_samantha Rh7AG187500 Rh7BG190800 Rh7CG198500 Rh7DG193100
rosa_wichuraiana Rw7G016450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 127
Acc36I ACCTGC 1 cut(s) 127
AccB1I GGYRCC 1 cut(s) 268
AccII CGCG 3 cut(s) 146, 293, 310
AclWI GGATC 2 cut(s) 55, 118
AcoI YGGCCR 2 cut(s) 96, 327
AcsI RAATTY 1 cut(s) 364
AcvI CACGTG 1 cut(s) 73
AcyI GRCGYC 1 cut(s) 269
AgsI TTSAA 1 cut(s) 546
AhlI ACTAGT 1 cut(s) 26
AjnI CCWGG 1 cut(s) 655
AluBI AGCT 2 cut(s) 17, 333
AluI AGCT 2 cut(s) 17, 333
AlwI GGATC 2 cut(s) 55, 118
AlwNI CAGNNNCTG 1 cut(s) 119
AoxI GGCC 5 cut(s) 84, 96, 200, 215, 327
ApeKI GCWGC 1 cut(s) 304
ApoI RAATTY 1 cut(s) 364
AseI ATTAAT 1 cut(s) 642
AspLEI GCGC 3 cut(s) 124, 241, 271
AspS9I GGNCC 3 cut(s) 84, 171, 215
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 5 cut(s) 193, 237, 292, 383, 605
AvaII GGWCC 1 cut(s) 171
BanI GGYRCC 1 cut(s) 268
BbrPI CACGTG 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 597
BbvI GCAGC 1 cut(s) 316
BccI CCATC 2 cut(s) 215, 352
BciT130I CCWGG 1 cut(s) 657
BcnI CCSGG 1 cut(s) 95
BcuI ACTAGT 1 cut(s) 26
BfaI CTAG 1 cut(s) 27
BfoI RGCGCY 2 cut(s) 242, 272
BfuAI ACCTGC 1 cut(s) 127
BisI GCNGC 8 cut(s) 125, 147, 150, 267, 272, 294, 305, 308
BlsI GCNGC 8 cut(s) 126, 148, 151, 268, 273, 295, 306, 309
Bme1390I CCNGG 2 cut(s) 95, 657
Bme18I GGWCC 1 cut(s) 171
BmgT120I GGNCC 3 cut(s) 84, 171, 215
BmiI GGNNCC 3 cut(s) 78, 172, 270
BmrFI CCNGG 2 cut(s) 95, 657
BmsI GCATC 2 cut(s) 43, 144
BpiI GAAGAC 1 cut(s) 597
BpuMI CCSGG 1 cut(s) 95
BsaAI YACGTR 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 269
BsaJI CCNNGG 6 cut(s) 80, 144, 174, 203, 308, 589
BsaWI WCCGGW 1 cut(s) 277
Bse118I RCCGGY 3 cut(s) 127, 157, 325
Bse3DI GCAATG 1 cut(s) 650
BseBI CCWGG 1 cut(s) 657
BseDI CCNNGG 6 cut(s) 80, 144, 174, 203, 308, 589
BseMI GCAATG 1 cut(s) 650
BseMII CTCAG 1 cut(s) 348
BseRI GAGGAG 1 cut(s) 399
BseXI GCAGC 1 cut(s) 316
Bsh1236I CGCG 3 cut(s) 146, 293, 310
BshFI GGCC 5 cut(s) 86, 98, 202, 217, 329
BshNI GGYRCC 1 cut(s) 268
BsiSI CCGG 6 cut(s) 95, 108, 128, 158, 278, 326
BsnI GGCC 5 cut(s) 86, 98, 202, 217, 329
Bsp143I GATC 3 cut(s) 47, 110, 619
BspANI GGCC 5 cut(s) 86, 98, 202, 217, 329
BspCNI CTCAG 1 cut(s) 347
BspFNI CGCG 3 cut(s) 146, 293, 310
BspLI GGNNCC 3 cut(s) 78, 172, 270
BspMI ACCTGC 1 cut(s) 127
BspPI GGATC 2 cut(s) 55, 118
BspT107I GGYRCC 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 650
BsrFI RCCGGY 3 cut(s) 127, 157, 325
BssAI RCCGGY 3 cut(s) 127, 157, 325
BssECI CCNNGG 6 cut(s) 80, 144, 174, 203, 308, 589
BssMI GATC 3 cut(s) 47, 110, 619
BssNI GRCGYC 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 657
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 185
BstACI GRCGYC 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 73
BstC8I GCNNGC 4 cut(s) 159, 327, 331, 385
BstDEI CTNAG 1 cut(s) 334
BstDSI CCRYGG 4 cut(s) 144, 174, 308, 589
BstFNI CGCG 3 cut(s) 146, 293, 310
BstH2I RGCGCY 2 cut(s) 242, 272
BstHHI GCGC 3 cut(s) 124, 241, 271
BstKTI GATC 3 cut(s) 50, 113, 622
BstMBI GATC 3 cut(s) 47, 110, 619
BstMWI GCNNNNNNNGC 5 cut(s) 83, 104, 113, 158, 339
BstNI CCWGG 1 cut(s) 657
BstNSI RCATGY 1 cut(s) 387
BstSCI CCNGG 2 cut(s) 93, 655
BstUI CGCG 3 cut(s) 146, 293, 310
BstV1I GCAGC 1 cut(s) 316
BstV2I GAAGAC 1 cut(s) 597
BsuRI GGCC 5 cut(s) 86, 98, 202, 217, 329
BtgI CCRYGG 4 cut(s) 144, 174, 308, 589
BtgZI GCGATG 1 cut(s) 167
BtsIMutI CAGTG 2 cut(s) 45, 342
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 4 cut(s) 159, 327, 331, 385
CaiI CAGNNNCTG 1 cut(s) 119
CfoI GCGC 3 cut(s) 124, 241, 271
Cfr10I RCCGGY 3 cut(s) 127, 157, 325
Cfr13I GGNCC 3 cut(s) 84, 171, 215
Cfr42I CCGCGG 2 cut(s) 147, 311
CviAII CATG 3 cut(s) 384, 473, 500
DdeI CTNAG 1 cut(s) 334
DinI GGCGCC 1 cut(s) 270
DpnI GATC 3 cut(s) 49, 112, 621
DpnII GATC 3 cut(s) 47, 110, 619
EaeI YGGCCR 2 cut(s) 96, 327
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
EciI GGCGGA 2 cut(s) 126, 311
Eco32I GATATC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 171
Eco72I CACGTG 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 655
EcoRV GATATC 1 cut(s) 258
EgeI GGCGCC 1 cut(s) 270
EheI GGCGCC 1 cut(s) 270
FaeI CATG 3 cut(s) 387, 476, 503
FaiI YATR 9 cut(s) 213, 236, 354, 385, 414, 474, 501, 530, 624
FatI CATG 3 cut(s) 383, 472, 499
FauI CCCGC 5 cut(s) 151, 154, 160, 303, 454
Fnu4HI GCNGC 8 cut(s) 125, 147, 150, 267, 272, 294, 305, 308
Fsp4HI GCNGC 8 cut(s) 125, 147, 150, 267, 272, 294, 305, 308
FspBI CTAG 1 cut(s) 27
GlaI GCGC 3 cut(s) 123, 240, 270
GluI GCNGC 8 cut(s) 125, 147, 150, 267, 272, 294, 305, 308
HaeII RGCGCY 2 cut(s) 242, 272
HaeIII GGCC 5 cut(s) 86, 98, 202, 217, 329
HapII CCGG 6 cut(s) 95, 108, 128, 158, 278, 326
HhaI GCGC 3 cut(s) 124, 241, 271
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 3 cut(s) 387, 476, 503
Hin6I GCGC 3 cut(s) 122, 239, 269
HinP1I GCGC 3 cut(s) 122, 239, 269
HpaII CCGG 6 cut(s) 95, 108, 128, 158, 278, 326
HphI GGTGA 5 cut(s) 193, 237, 292, 383, 605
Hpy188I TCNGA 4 cut(s) 52, 64, 81, 619
Hpy99I CGWCG 1 cut(s) 265
HpyAV CCTTC 1 cut(s) 595
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 2 cut(s) 383, 518
HpyF10VI GCNNNNNNNGC 5 cut(s) 83, 104, 113, 158, 339
HpyF3I CTNAG 1 cut(s) 334
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 3 cut(s) 387, 476, 503
HspAI GCGC 3 cut(s) 122, 239, 269
KasI GGCGCC 1 cut(s) 268
KroI GCCGGC 2 cut(s) 157, 325
KroNI GCCGGC 2 cut(s) 159, 327
KspI CCGCGG 2 cut(s) 147, 311
Kzo9I GATC 3 cut(s) 47, 110, 619
LmnI GCTCC 4 cut(s) 61, 82, 139, 225
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 2 cut(s) 43, 144
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 3 cut(s) 34, 229, 243
MalI GATC 3 cut(s) 49, 112, 621
MboI GATC 3 cut(s) 47, 110, 619
MboII GAAGA 5 cut(s) 196, 199, 202, 567, 597
MluCI AATT 4 cut(s) 364, 400, 427, 598
Mly113I GGCGCC 1 cut(s) 269
MroNI GCCGGC 2 cut(s) 157, 325
MseI TTAA 2 cut(s) 426, 642
MspA1I CMGCKG 2 cut(s) 146, 310
MspI CCGG 6 cut(s) 95, 108, 128, 158, 278, 326
MspR9I CCNGG 2 cut(s) 95, 657
MvaI CCWGG 1 cut(s) 657
MvnI CGCG 3 cut(s) 146, 293, 310
MwoI GCNNNNNNNGC 5 cut(s) 83, 104, 113, 158, 339
NaeI GCCGGC 2 cut(s) 159, 327
NarI GGCGCC 1 cut(s) 269
NciI CCSGG 1 cut(s) 95
NdeII GATC 3 cut(s) 47, 110, 619
NgoMIV GCCGGC 2 cut(s) 157, 325
NlaIII CATG 3 cut(s) 387, 476, 503
NlaIV GGNNCC 3 cut(s) 78, 172, 270
NmeAIII GCCGAG 1 cut(s) 228
NmuCI GTSAC 2 cut(s) 229, 243
NspI RCATGY 1 cut(s) 387
PaeI GCATGC 1 cut(s) 387
PaqCI CACCTGC 1 cut(s) 127
PdiI GCCGGC 2 cut(s) 159, 327
PkrI GCNGC 8 cut(s) 126, 148, 151, 268, 273, 295, 306, 309
PluTI GGCGCC 1 cut(s) 272
PmaCI CACGTG 1 cut(s) 73
PmlI CACGTG 1 cut(s) 73
Ppu21I YACGTR 1 cut(s) 73
PshBI ATTAAT 1 cut(s) 642
Psp6I CCWGG 1 cut(s) 655
PspCI CACGTG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 655
PspN4I GGNNCC 3 cut(s) 78, 172, 270
PspPI GGNCC 3 cut(s) 84, 171, 215
PstNI CAGNNNCTG 1 cut(s) 119
SacII CCGCGG 2 cut(s) 147, 311
SaqAI TTAA 2 cut(s) 426, 642
SatI GCNGC 8 cut(s) 125, 147, 150, 267, 272, 294, 305, 308
Sau3AI GATC 3 cut(s) 47, 110, 619
Sau96I GGNCC 3 cut(s) 84, 171, 215
ScrFI CCNGG 2 cut(s) 95, 657
SetI ASST 8 cut(s) 19, 75, 121, 335, 373, 441, 570, 664
SfaNI GCATC 2 cut(s) 43, 144
SfoI GGCGCC 1 cut(s) 270
Sfr303I CCGCGG 2 cut(s) 147, 311
SgrBI CCGCGG 2 cut(s) 147, 311
SinI GGWCC 1 cut(s) 171
SpeI ACTAGT 1 cut(s) 26
SphI GCATGC 1 cut(s) 387
Sse9I AATT 4 cut(s) 364, 400, 427, 598
SspDI GGCGCC 1 cut(s) 268
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 2 cut(s) 93, 655
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 578
TasI AATT 4 cut(s) 364, 400, 427, 598
TauI GCSGC 7 cut(s) 127, 149, 152, 269, 274, 296, 310
Tru1I TTAA 2 cut(s) 426, 642
Tru9I TTAA 2 cut(s) 426, 642
TscAI CASTG 2 cut(s) 45, 342
TseFI GTSAC 2 cut(s) 229, 243
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 2 cut(s) 229, 243
TspDTI ATGAA 1 cut(s) 516
TspGWI ACGGA 3 cut(s) 48, 163, 578
TspRI CASTG 2 cut(s) 45, 342
VpaK11BI GGWCC 1 cut(s) 171
VspI ATTAAT 1 cut(s) 642
XapI RAATTY 1 cut(s) 364
XceI RCATGY 1 cut(s) 387
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.