AT4G12730

Fasciclin domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
7491227 .. 7493080
1854 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G12730.1

Sequence Viewer

Length: 1212 bp
ATGGCTTATCTCCGGCGAGCAGCCACCGCATTGGTTCTCATTTTCCAGCTCCATCTCTTTCTCTCTCTCTCAAATGCACATAACATAACCCGAATCTTGGCCAAAGACCCTGATTTCTCCACTTTCAACCACTATCTCTCAGCGACTCATCTCGCCGACGAGATCAACCGCCGGCAAACAATCACCGTCTTGGCCGTCGATAACTCAGCAATGTCCTCCATCCTCTCTAACGGATACTCACTCTACCAAATCCGCAACATTCTCTCTCTCCACGTCCTGGTCGATTACTTCGGCACCAAGAAACTTCACCAGATCACCGACGGCTCCACCTCCACTGCCTCCATGTTTCAATCCACCGGATCCGCCACCGGAACTTCTGGATACATCAACATCACCGATATAAAAGGCGGTAAAGTCGCTTTTGGTGTCCAAGACGACGATAGCAAGCTCACAGCTCACTACGTCAAATCCGTCTTTGAAAAGCCTTACAACATCTCTGTTCTTCACATCAGCCAAGTCTTAACCTCGCCGGAAGCAGAAGCTCCCACGGCGAGTCCCAGCGACCTCATCCTCACCACAATCCTCGAAAAACAAGGGTGCAAAGCTTTCTCCGACATCTTGAAGTCAACCGGCGCCGACAAAACGTTCCAAGATACCGTAGACGGAGGCTTAACGGTGTTCTGTCCCTCCGACAGCGCTGTCGGTAAGTTCATGCCGAAATTCAAATCCCTTTCTCCGGCGAACAAGACTGCGTTAGTGCTTTACCACGGCATGCCGGTTTACCAGTCGTTACAAATGCTTAGATCAGGTAACGGCGCCGTTAACACGTTAGCGACGGAAGGTAACAACAAGTTTGATTTCACCGTTCAAAATGACGGAGAAGACGTGACGCTGGAGACGGACGTTGTGACGGCGAAGGTAATGGGGACGTTAAAGGATCAAGAGCCATTGATAGTTTACAAGATCGATAAAGTGTTGTTGCCTAGAGAAATCTACAAGGCCGTTAAGACGTCCGCTCCAGCTCCTAAGTCGAGTAAGAAAAAGCCTAAGAACGCGGAGGCTGACGCCGACGGACCTAGCGCCGATGCTCCGTCAGATGATGATGTTGAGGTGGCTGACGATAAAAACGGCGCCGTATCAGCGATGATTACTCGAACAAGTAATGTCGTAACGGCCATTGTCGGGCTCTGTTTCGGAGTTTGGCTTATGTGA

Protein Analysis

403

Amino Acids

43.45

Weight (kDa)

6.15

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 37 - 130 7e-07 Fasciclin domain
Fasciclin PF02469 199 - 328 7.3e-16 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 698
AatII GACGTC 1 cut(s) 1013
AccB1I GGYRCC 4 cut(s) 293, 632, 815, 1130
AccB7I CCANNNNNTGG 1 cut(s) 277
AccBSI CCGCTC 1 cut(s) 1016
AccI GTMKAC 1 cut(s) 660
AccII CGCG 1 cut(s) 1055
AciI CCGC 7 cut(s) 27, 169, 253, 363, 408, 1014, 1055
AclI AACGTT 1 cut(s) 644
AclWI GGATC 3 cut(s) 354, 367, 945
AcoI YGGCCR 3 cut(s) 99, 192, 1173
AcsI RAATTY 1 cut(s) 719
AcyI GRCGYC 5 cut(s) 633, 816, 1010, 1065, 1131
AfeI AGCGCT 1 cut(s) 697
AfiI CCNNNNNNNGG 4 cut(s) 97, 277, 736, 1182
AflIII ACRYGT 1 cut(s) 825
AgsI TTSAA 6 cut(s) 127, 350, 479, 622, 724, 869
AjiI CACGTC 2 cut(s) 274, 886
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 6 cut(s) 49, 448, 455, 542, 605, 1022
AluI AGCT 6 cut(s) 49, 448, 455, 542, 605, 1022
Alw26I GTCTC 1 cut(s) 890
AlwI GGATC 3 cut(s) 354, 367, 945
Aor51HI AGCGCT 1 cut(s) 697
AoxI GGCC 4 cut(s) 99, 192, 999, 1173
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 719
AspLEI GCGC 5 cut(s) 635, 698, 818, 1082, 1133
AspS9I GGNCC 1 cut(s) 1073
AsuHPI GGTGA 6 cut(s) 175, 299, 307, 385, 565, 853
AvaII GGWCC 1 cut(s) 1073
BalI TGGCCA 1 cut(s) 101
BamHI GGATCC 1 cut(s) 359
BanI GGYRCC 4 cut(s) 293, 632, 815, 1130
BanII GRGCYC 1 cut(s) 1188
BbsI GAAGAC 1 cut(s) 888
BbvI GCAGC 1 cut(s) 32
BccI CCATC 2 cut(s) 60, 227
BciT130I CCWGG 1 cut(s) 278
BciVI GTATCC 2 cut(s) 227, 374
BcoDI GTCTC 1 cut(s) 890
BfaI CTAG 2 cut(s) 984, 1077
BfoI RGCGCY 5 cut(s) 636, 699, 819, 1083, 1134
BfuI GTATCC 2 cut(s) 227, 374
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 1073
BmgBI CACGTC 2 cut(s) 274, 886
BmgT120I GGNCC 1 cut(s) 1073
BmiI GGNNCC 6 cut(s) 295, 325, 361, 634, 817, 1132
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 1 cut(s) 1075
BpiI GAAGAC 1 cut(s) 888
BpmI CTGGAG 2 cut(s) 914, 1002
Bsa29I ATCGAT 1 cut(s) 966
BsaHI GRCGYC 5 cut(s) 633, 816, 1010, 1065, 1131
BsaJI CCNNGG 2 cut(s) 546, 766
BsaWI WCCGGW 2 cut(s) 356, 368
BsaXI ACNNNNNCTCC 4 cut(s) 870, 900, 1000, 1030
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 277, 736, 1182
Bse118I RCCGGY 3 cut(s) 171, 629, 775
Bse1I ACTGG 1 cut(s) 784
Bse3DI GCAATG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 278
BseCI ATCGAT 1 cut(s) 966
BseDI CCNNGG 2 cut(s) 546, 766
BseGI GGATG 2 cut(s) 219, 567
BseLI CCNNNNNNNGG 4 cut(s) 97, 277, 736, 1182
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 2 cut(s) 153, 219
BseNI ACTGG 1 cut(s) 784
BseXI GCAGC 1 cut(s) 32
BseYI CCCAGC 1 cut(s) 557
Bsh1236I CGCG 1 cut(s) 1055
BshFI GGCC 4 cut(s) 101, 194, 1001, 1175
BshNI GGYRCC 4 cut(s) 293, 632, 815, 1130
BshVI ATCGAT 1 cut(s) 966
BsiSI CCGG 8 cut(s) 13, 172, 357, 369, 530, 630, 737, 776
BslFI GGGAC 3 cut(s) 540, 669, 940
BslI CCNNNNNNNGG 4 cut(s) 97, 277, 736, 1182
BsmAI GTCTC 1 cut(s) 890
BsmBI CGTCTC 1 cut(s) 890
BsmFI GGGAC 3 cut(s) 540, 669, 940
BsnI GGCC 4 cut(s) 101, 194, 1001, 1175
Bsp1286I GDGCHC 1 cut(s) 1188
Bsp143I GATC 6 cut(s) 162, 312, 359, 803, 937, 963
BspACI CCGC 7 cut(s) 27, 169, 253, 363, 408, 1014, 1055
BspANI GGCC 4 cut(s) 101, 194, 1001, 1175
BspCNI CTCAG 2 cut(s) 152, 218
BspDI ATCGAT 1 cut(s) 966
BspFNI CGCG 1 cut(s) 1055
BspLI GGNNCC 6 cut(s) 295, 325, 361, 634, 817, 1132
BspPI GGATC 3 cut(s) 354, 367, 945
BspT107I GGYRCC 4 cut(s) 293, 632, 815, 1130
BsrBI CCGCTC 1 cut(s) 1016
BsrDI GCAATG 1 cut(s) 216
BsrFI RCCGGY 3 cut(s) 171, 629, 775
BsrI ACTGG 1 cut(s) 784
BssAI RCCGGY 3 cut(s) 171, 629, 775
BssECI CCNNGG 2 cut(s) 546, 766
BssMI GATC 6 cut(s) 162, 312, 359, 803, 937, 963
BssNI GRCGYC 5 cut(s) 633, 816, 1010, 1065, 1131
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 4 cut(s) 187, 658, 676, 865
BstACI GRCGYC 5 cut(s) 633, 816, 1010, 1065, 1131
BstC8I GCNNGC 4 cut(s) 18, 173, 446, 773
BstDEI CTNAG 5 cut(s) 139, 205, 800, 1026, 1047
BstDSI CCRYGG 2 cut(s) 546, 766
BstF5I GGATG 2 cut(s) 219, 567
BstFNI CGCG 1 cut(s) 1055
BstH2I RGCGCY 5 cut(s) 636, 699, 819, 1083, 1134
BstHHI GCGC 5 cut(s) 635, 698, 818, 1082, 1133
BstKTI GATC 6 cut(s) 165, 315, 362, 806, 940, 966
BstMAI GTCTC 1 cut(s) 890
BstMBI GATC 6 cut(s) 162, 312, 359, 803, 937, 963
BstMWI GCNNNNNNNGC 3 cut(s) 26, 548, 1139
BstNI CCWGG 1 cut(s) 278
BstNSI RCATGY 1 cut(s) 775
BstSCI CCNGG 1 cut(s) 276
BstUI CGCG 1 cut(s) 1055
BstV1I GCAGC 1 cut(s) 32
BstV2I GAAGAC 1 cut(s) 888
BstX2I RGATCY 1 cut(s) 359
BstXI CCANNNNNNTGG 1 cut(s) 31
BstYI RGATCY 1 cut(s) 359
Bsu15I ATCGAT 1 cut(s) 966
BsuI GTATCC 2 cut(s) 227, 374
BsuRI GGCC 4 cut(s) 101, 194, 1001, 1175
BsuTUI ATCGAT 1 cut(s) 966
BtgI CCRYGG 2 cut(s) 546, 766
BtgZI GCGATG 1 cut(s) 1157
BtrI CACGTC 2 cut(s) 274, 886
BtsCI GGATG 2 cut(s) 219, 567
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 4 cut(s) 18, 173, 446, 773
CfoI GCGC 5 cut(s) 635, 698, 818, 1082, 1133
Cfr10I RCCGGY 3 cut(s) 171, 629, 775
Cfr13I GGNCC 1 cut(s) 1073
ClaI ATCGAT 1 cut(s) 966
CseI GACGC 2 cut(s) 898, 1073
CviAII CATG 3 cut(s) 343, 712, 772
DdeI CTNAG 5 cut(s) 139, 205, 800, 1026, 1047
DinI GGCGCC 3 cut(s) 634, 817, 1132
DpnI GATC 6 cut(s) 164, 314, 361, 805, 939, 965
DpnII GATC 6 cut(s) 162, 312, 359, 803, 937, 963
DrdI GACNNNNNNGTC 1 cut(s) 698
DseDI GACNNNNNNGTC 1 cut(s) 698
EaeI YGGCCR 3 cut(s) 99, 192, 1173
EciI GGCGGA 1 cut(s) 352
Eco24I GRGCYC 1 cut(s) 1188
Eco47I GGWCC 1 cut(s) 1073
Eco47III AGCGCT 1 cut(s) 697
EcoRII CCWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 1188
EgeI GGCGCC 3 cut(s) 634, 817, 1132
EheI GGCGCC 3 cut(s) 634, 817, 1132
Esp3I CGTCTC 1 cut(s) 890
FaeI CATG 3 cut(s) 346, 715, 775
FaiI YATR 7 cut(s) 81, 86, 344, 401, 713, 773, 1208
FaqI GGGAC 3 cut(s) 540, 669, 940
FatI CATG 3 cut(s) 342, 711, 771
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 2 cut(s) 206, 554
FriOI GRGCYC 1 cut(s) 1188
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 2 cut(s) 984, 1077
GlaI GCGC 5 cut(s) 634, 697, 817, 1081, 1132
GluI GCNGC 1 cut(s) 21
GsaI CCCAGC 1 cut(s) 561
GsuI CTGGAG 2 cut(s) 914, 1002
HaeII RGCGCY 5 cut(s) 636, 699, 819, 1083, 1134
HaeIII GGCC 4 cut(s) 101, 194, 1001, 1175
HapII CCGG 8 cut(s) 13, 172, 357, 369, 530, 630, 737, 776
HgaI GACGC 2 cut(s) 898, 1073
HhaI GCGC 5 cut(s) 635, 698, 818, 1082, 1133
Hin1I GRCGYC 5 cut(s) 633, 816, 1010, 1065, 1131
Hin1II CATG 3 cut(s) 346, 715, 775
Hin6I GCGC 5 cut(s) 633, 696, 816, 1080, 1131
HinP1I GCGC 5 cut(s) 633, 696, 816, 1080, 1131
HincII GTYRAC 2 cut(s) 627, 823
HindII GTYRAC 2 cut(s) 627, 823
HindIII AAGCTT 1 cut(s) 603
HinfI GANTC 3 cut(s) 93, 145, 553
HpaI GTTAAC 1 cut(s) 823
HpaII CCGG 8 cut(s) 13, 172, 357, 369, 530, 630, 737, 776
HphI GGTGA 6 cut(s) 175, 299, 307, 385, 565, 853
Hpy166II GTNNAC 5 cut(s) 627, 661, 781, 823, 958
Hpy188I TCNGA 4 cut(s) 613, 691, 1096, 1196
Hpy188III TCNNGA 3 cut(s) 378, 619, 941
Hpy8I GTNNAC 5 cut(s) 627, 661, 781, 823, 958
Hpy99I CGWCG 6 cut(s) 161, 200, 323, 440, 838, 1073
HpyAV CCTTC 2 cut(s) 833, 910
HpyCH4III ACNGT 4 cut(s) 187, 658, 676, 865
HpyCH4IV ACGT 8 cut(s) 273, 462, 644, 827, 885, 903, 929, 1010
HpyCH4V TGCA 2 cut(s) 77, 600
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 548, 1139
HpyF3I CTNAG 5 cut(s) 139, 205, 800, 1026, 1047
HpySE526I ACGT 8 cut(s) 273, 462, 644, 827, 885, 903, 929, 1010
Hsp92I GRCGYC 5 cut(s) 633, 816, 1010, 1065, 1131
Hsp92II CATG 3 cut(s) 346, 715, 775
HspAI GCGC 5 cut(s) 633, 696, 816, 1080, 1131
KasI GGCGCC 3 cut(s) 632, 815, 1130
KroI GCCGGC 1 cut(s) 171
KroNI GCCGGC 1 cut(s) 173
KspAI GTTAAC 1 cut(s) 823
Kzo9I GATC 6 cut(s) 162, 312, 359, 803, 937, 963
LmnI GCTCC 6 cut(s) 54, 329, 547, 1021, 1027, 1093
Lsp1109I GCAGC 1 cut(s) 32
LweI GCATC 1 cut(s) 1075
MaeI CTAG 2 cut(s) 984, 1077
MaeII ACGT 8 cut(s) 273, 462, 644, 827, 885, 903, 929, 1010
MaeIII GTNAC 6 cut(s) 789, 809, 842, 886, 907, 1168
MalI GATC 6 cut(s) 164, 314, 361, 805, 939, 965
MbiI CCGCTC 1 cut(s) 1016
MboI GATC 6 cut(s) 162, 312, 359, 803, 937, 963
MboII GAAGA 2 cut(s) 494, 893
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 1188
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 1 cut(s) 719
MluNI TGGCCA 1 cut(s) 101
Mly113I GGCGCC 3 cut(s) 633, 816, 1131
MlyI GAGTC 2 cut(s) 139, 562
MmeI TCCRAC 2 cut(s) 636, 714
Mox20I TGGCCA 1 cut(s) 101
MroNI GCCGGC 1 cut(s) 171
MscI TGGCCA 1 cut(s) 101
MseI TTAA 5 cut(s) 521, 671, 822, 932, 1005
Msp20I TGGCCA 1 cut(s) 101
MspI CCGG 8 cut(s) 13, 172, 357, 369, 530, 630, 737, 776
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MvnI CGCG 1 cut(s) 1055
MwoI GCNNNNNNNGC 3 cut(s) 26, 548, 1139
NaeI GCCGGC 1 cut(s) 173
NarI GGCGCC 3 cut(s) 633, 816, 1131
NdeII GATC 6 cut(s) 162, 312, 359, 803, 937, 963
NgoMIV GCCGGC 1 cut(s) 171
NlaIII CATG 3 cut(s) 346, 715, 775
NlaIV GGNNCC 6 cut(s) 295, 325, 361, 634, 817, 1132
NmuCI GTSAC 2 cut(s) 886, 907
NspI RCATGY 1 cut(s) 775
PaeI GCATGC 1 cut(s) 775
PcsI WCGNNNNNNNCGW 3 cut(s) 279, 468, 882
PdiI GCCGGC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 93
PflMI CCANNNNNTGG 1 cut(s) 277
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 2 cut(s) 139, 561
PluTI GGCGCC 3 cut(s) 636, 819, 1134
PpsI GAGTC 2 cut(s) 139, 561
Psp1406I AACGTT 1 cut(s) 644
Psp6I CCWGG 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 6 cut(s) 295, 325, 361, 634, 817, 1132
PspPI GGNCC 1 cut(s) 1073
PsuI RGATCY 1 cut(s) 359
SaqAI TTAA 5 cut(s) 521, 671, 822, 932, 1005
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 6 cut(s) 162, 312, 359, 803, 937, 963
Sau96I GGNCC 1 cut(s) 1073
SchI GAGTC 2 cut(s) 139, 562
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 1 cut(s) 1188
SfaNI GCATC 1 cut(s) 1075
SfoI GGCGCC 3 cut(s) 634, 817, 1132
SinI GGWCC 1 cut(s) 1073
SphI GCATGC 1 cut(s) 775
Sse9I AATT 1 cut(s) 719
SsiI CCGC 7 cut(s) 27, 169, 253, 363, 408, 1014, 1055
SspDI GGCGCC 3 cut(s) 632, 815, 1130
SspMI CTAG 2 cut(s) 984, 1077
StyD4I CCNGG 1 cut(s) 276
TaaI ACNGT 4 cut(s) 187, 658, 676, 865
TaiI ACGT 8 cut(s) 276, 465, 647, 830, 888, 906, 932, 1013
TaqI TCGA 6 cut(s) 198, 282, 585, 966, 1031, 1153
TasI AATT 1 cut(s) 719
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 5 cut(s) 521, 671, 822, 932, 1005
Tru9I TTAA 5 cut(s) 521, 671, 822, 932, 1005
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 2 cut(s) 886, 907
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 2 cut(s) 886, 907
TspDTI ATGAA 1 cut(s) 700
TspGWI ACGGA 8 cut(s) 246, 460, 678, 851, 891, 914, 1080, 1086
TspRI CASTG 1 cut(s) 340
Van91I CCANNNNNTGG 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 1073
XapI RAATTY 1 cut(s) 719
XceI RCATGY 1 cut(s) 775
XmiI GTMKAC 1 cut(s) 660
XspI CTAG 2 cut(s) 984, 1077
ZraI GACGTC 1 cut(s) 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.