Fasciclin domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G12730 |
| fragaria_vesca | FvH4_6g40590 |
| malus_domestica | MD09G1127000.v1.1 MD17G1117400.v1.1 |
| prunus_persica | Prupe.2G000400_v2.0.a1 Prupe.3G197200_v2.0.a1 |
| pyrus_communis | pycom09g05130 pycom17g10800 |
| rosa_chinensis | RchiOBHm_Chr2g0155911 |
| rosa_laevigata | RLG00000020875 |
| rosa_multiflora | Rmu_sc0002049.1_g000001 Rmu_sc0003417.1_g000026 Rmu_sc0008488.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00093390 |
| rosa_rugosa | Rorug02G0450800 |
| rosa_samantha | Rh2AG517400 Rh2BG528600 Rh2CG502100 Rh2DG537700 |
| rosa_wichuraiana | Rw2G042590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 698 |
| AatII | GACGTC | 1 cut(s) | 1013 |
| AccB1I | GGYRCC | 4 cut(s) | 293, 632, 815, 1130 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 277 |
| AccBSI | CCGCTC | 1 cut(s) | 1016 |
| AccI | GTMKAC | 1 cut(s) | 660 |
| AccII | CGCG | 1 cut(s) | 1055 |
| AciI | CCGC | 7 cut(s) | 27, 169, 253, 363, 408, 1014, 1055 |
| AclI | AACGTT | 1 cut(s) | 644 |
| AclWI | GGATC | 3 cut(s) | 354, 367, 945 |
| AcoI | YGGCCR | 3 cut(s) | 99, 192, 1173 |
| AcsI | RAATTY | 1 cut(s) | 719 |
| AcyI | GRCGYC | 5 cut(s) | 633, 816, 1010, 1065, 1131 |
| AfeI | AGCGCT | 1 cut(s) | 697 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 97, 277, 736, 1182 |
| AflIII | ACRYGT | 1 cut(s) | 825 |
| AgsI | TTSAA | 6 cut(s) | 127, 350, 479, 622, 724, 869 |
| AjiI | CACGTC | 2 cut(s) | 274, 886 |
| AjnI | CCWGG | 1 cut(s) | 276 |
| AluBI | AGCT | 6 cut(s) | 49, 448, 455, 542, 605, 1022 |
| AluI | AGCT | 6 cut(s) | 49, 448, 455, 542, 605, 1022 |
| Alw26I | GTCTC | 1 cut(s) | 890 |
| AlwI | GGATC | 3 cut(s) | 354, 367, 945 |
| Aor51HI | AGCGCT | 1 cut(s) | 697 |
| AoxI | GGCC | 4 cut(s) | 99, 192, 999, 1173 |
| ApeKI | GCWGC | 1 cut(s) | 20 |
| ApoI | RAATTY | 1 cut(s) | 719 |
| AspLEI | GCGC | 5 cut(s) | 635, 698, 818, 1082, 1133 |
| AspS9I | GGNCC | 1 cut(s) | 1073 |
| AsuHPI | GGTGA | 6 cut(s) | 175, 299, 307, 385, 565, 853 |
| AvaII | GGWCC | 1 cut(s) | 1073 |
| BalI | TGGCCA | 1 cut(s) | 101 |
| BamHI | GGATCC | 1 cut(s) | 359 |
| BanI | GGYRCC | 4 cut(s) | 293, 632, 815, 1130 |
| BanII | GRGCYC | 1 cut(s) | 1188 |
| BbsI | GAAGAC | 1 cut(s) | 888 |
| BbvI | GCAGC | 1 cut(s) | 32 |
| BccI | CCATC | 2 cut(s) | 60, 227 |
| BciT130I | CCWGG | 1 cut(s) | 278 |
| BciVI | GTATCC | 2 cut(s) | 227, 374 |
| BcoDI | GTCTC | 1 cut(s) | 890 |
| BfaI | CTAG | 2 cut(s) | 984, 1077 |
| BfoI | RGCGCY | 5 cut(s) | 636, 699, 819, 1083, 1134 |
| BfuI | GTATCC | 2 cut(s) | 227, 374 |
| BisI | GCNGC | 1 cut(s) | 21 |
| BlsI | GCNGC | 1 cut(s) | 22 |
| Bme1390I | CCNGG | 1 cut(s) | 278 |
| Bme18I | GGWCC | 1 cut(s) | 1073 |
| BmgBI | CACGTC | 2 cut(s) | 274, 886 |
| BmgT120I | GGNCC | 1 cut(s) | 1073 |
| BmiI | GGNNCC | 6 cut(s) | 295, 325, 361, 634, 817, 1132 |
| BmrFI | CCNGG | 1 cut(s) | 278 |
| BmsI | GCATC | 1 cut(s) | 1075 |
| BpiI | GAAGAC | 1 cut(s) | 888 |
| BpmI | CTGGAG | 2 cut(s) | 914, 1002 |
| Bsa29I | ATCGAT | 1 cut(s) | 966 |
| BsaHI | GRCGYC | 5 cut(s) | 633, 816, 1010, 1065, 1131 |
| BsaJI | CCNNGG | 2 cut(s) | 546, 766 |
| BsaWI | WCCGGW | 2 cut(s) | 356, 368 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 870, 900, 1000, 1030 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 97, 277, 736, 1182 |
| Bse118I | RCCGGY | 3 cut(s) | 171, 629, 775 |
| Bse1I | ACTGG | 1 cut(s) | 784 |
| Bse3DI | GCAATG | 1 cut(s) | 216 |
| BseBI | CCWGG | 1 cut(s) | 278 |
| BseCI | ATCGAT | 1 cut(s) | 966 |
| BseDI | CCNNGG | 2 cut(s) | 546, 766 |
| BseGI | GGATG | 2 cut(s) | 219, 567 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 97, 277, 736, 1182 |
| BseMI | GCAATG | 1 cut(s) | 216 |
| BseMII | CTCAG | 2 cut(s) | 153, 219 |
| BseNI | ACTGG | 1 cut(s) | 784 |
| BseXI | GCAGC | 1 cut(s) | 32 |
| BseYI | CCCAGC | 1 cut(s) | 557 |
| Bsh1236I | CGCG | 1 cut(s) | 1055 |
| BshFI | GGCC | 4 cut(s) | 101, 194, 1001, 1175 |
| BshNI | GGYRCC | 4 cut(s) | 293, 632, 815, 1130 |
| BshVI | ATCGAT | 1 cut(s) | 966 |
| BsiSI | CCGG | 8 cut(s) | 13, 172, 357, 369, 530, 630, 737, 776 |
| BslFI | GGGAC | 3 cut(s) | 540, 669, 940 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 97, 277, 736, 1182 |
| BsmAI | GTCTC | 1 cut(s) | 890 |
| BsmBI | CGTCTC | 1 cut(s) | 890 |
| BsmFI | GGGAC | 3 cut(s) | 540, 669, 940 |
| BsnI | GGCC | 4 cut(s) | 101, 194, 1001, 1175 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1188 |
| Bsp143I | GATC | 6 cut(s) | 162, 312, 359, 803, 937, 963 |
| BspACI | CCGC | 7 cut(s) | 27, 169, 253, 363, 408, 1014, 1055 |
| BspANI | GGCC | 4 cut(s) | 101, 194, 1001, 1175 |
| BspCNI | CTCAG | 2 cut(s) | 152, 218 |
| BspDI | ATCGAT | 1 cut(s) | 966 |
| BspFNI | CGCG | 1 cut(s) | 1055 |
| BspLI | GGNNCC | 6 cut(s) | 295, 325, 361, 634, 817, 1132 |
| BspPI | GGATC | 3 cut(s) | 354, 367, 945 |
| BspT107I | GGYRCC | 4 cut(s) | 293, 632, 815, 1130 |
| BsrBI | CCGCTC | 1 cut(s) | 1016 |
| BsrDI | GCAATG | 1 cut(s) | 216 |
| BsrFI | RCCGGY | 3 cut(s) | 171, 629, 775 |
| BsrI | ACTGG | 1 cut(s) | 784 |
| BssAI | RCCGGY | 3 cut(s) | 171, 629, 775 |
| BssECI | CCNNGG | 2 cut(s) | 546, 766 |
| BssMI | GATC | 6 cut(s) | 162, 312, 359, 803, 937, 963 |
| BssNI | GRCGYC | 5 cut(s) | 633, 816, 1010, 1065, 1131 |
| Bst2UI | CCWGG | 1 cut(s) | 278 |
| Bst4CI | ACNGT | 4 cut(s) | 187, 658, 676, 865 |
| BstACI | GRCGYC | 5 cut(s) | 633, 816, 1010, 1065, 1131 |
| BstC8I | GCNNGC | 4 cut(s) | 18, 173, 446, 773 |
| BstDEI | CTNAG | 5 cut(s) | 139, 205, 800, 1026, 1047 |
| BstDSI | CCRYGG | 2 cut(s) | 546, 766 |
| BstF5I | GGATG | 2 cut(s) | 219, 567 |
| BstFNI | CGCG | 1 cut(s) | 1055 |
| BstH2I | RGCGCY | 5 cut(s) | 636, 699, 819, 1083, 1134 |
| BstHHI | GCGC | 5 cut(s) | 635, 698, 818, 1082, 1133 |
| BstKTI | GATC | 6 cut(s) | 165, 315, 362, 806, 940, 966 |
| BstMAI | GTCTC | 1 cut(s) | 890 |
| BstMBI | GATC | 6 cut(s) | 162, 312, 359, 803, 937, 963 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 26, 548, 1139 |
| BstNI | CCWGG | 1 cut(s) | 278 |
| BstNSI | RCATGY | 1 cut(s) | 775 |
| BstSCI | CCNGG | 1 cut(s) | 276 |
| BstUI | CGCG | 1 cut(s) | 1055 |
| BstV1I | GCAGC | 1 cut(s) | 32 |
| BstV2I | GAAGAC | 1 cut(s) | 888 |
| BstX2I | RGATCY | 1 cut(s) | 359 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 31 |
| BstYI | RGATCY | 1 cut(s) | 359 |
| Bsu15I | ATCGAT | 1 cut(s) | 966 |
| BsuI | GTATCC | 2 cut(s) | 227, 374 |
| BsuRI | GGCC | 4 cut(s) | 101, 194, 1001, 1175 |
| BsuTUI | ATCGAT | 1 cut(s) | 966 |
| BtgI | CCRYGG | 2 cut(s) | 546, 766 |
| BtgZI | GCGATG | 1 cut(s) | 1157 |
| BtrI | CACGTC | 2 cut(s) | 274, 886 |
| BtsCI | GGATG | 2 cut(s) | 219, 567 |
| BtsI | GCAGTG | 1 cut(s) | 333 |
| BtsIMutI | CAGTG | 1 cut(s) | 333 |
| Cac8I | GCNNGC | 4 cut(s) | 18, 173, 446, 773 |
| CfoI | GCGC | 5 cut(s) | 635, 698, 818, 1082, 1133 |
| Cfr10I | RCCGGY | 3 cut(s) | 171, 629, 775 |
| Cfr13I | GGNCC | 1 cut(s) | 1073 |
| ClaI | ATCGAT | 1 cut(s) | 966 |
| CseI | GACGC | 2 cut(s) | 898, 1073 |
| CviAII | CATG | 3 cut(s) | 343, 712, 772 |
| DdeI | CTNAG | 5 cut(s) | 139, 205, 800, 1026, 1047 |
| DinI | GGCGCC | 3 cut(s) | 634, 817, 1132 |
| DpnI | GATC | 6 cut(s) | 164, 314, 361, 805, 939, 965 |
| DpnII | GATC | 6 cut(s) | 162, 312, 359, 803, 937, 963 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 698 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 698 |
| EaeI | YGGCCR | 3 cut(s) | 99, 192, 1173 |
| EciI | GGCGGA | 1 cut(s) | 352 |
| Eco24I | GRGCYC | 1 cut(s) | 1188 |
| Eco47I | GGWCC | 1 cut(s) | 1073 |
| Eco47III | AGCGCT | 1 cut(s) | 697 |
| EcoRII | CCWGG | 1 cut(s) | 276 |
| EcoT38I | GRGCYC | 1 cut(s) | 1188 |
| EgeI | GGCGCC | 3 cut(s) | 634, 817, 1132 |
| EheI | GGCGCC | 3 cut(s) | 634, 817, 1132 |
| Esp3I | CGTCTC | 1 cut(s) | 890 |
| FaeI | CATG | 3 cut(s) | 346, 715, 775 |
| FaiI | YATR | 7 cut(s) | 81, 86, 344, 401, 713, 773, 1208 |
| FaqI | GGGAC | 3 cut(s) | 540, 669, 940 |
| FatI | CATG | 3 cut(s) | 342, 711, 771 |
| FblI | GTMKAC | 1 cut(s) | 660 |
| Fnu4HI | GCNGC | 1 cut(s) | 21 |
| FokI | GGATG | 2 cut(s) | 206, 554 |
| FriOI | GRGCYC | 1 cut(s) | 1188 |
| Fsp4HI | GCNGC | 1 cut(s) | 21 |
| FspBI | CTAG | 2 cut(s) | 984, 1077 |
| GlaI | GCGC | 5 cut(s) | 634, 697, 817, 1081, 1132 |
| GluI | GCNGC | 1 cut(s) | 21 |
| GsaI | CCCAGC | 1 cut(s) | 561 |
| GsuI | CTGGAG | 2 cut(s) | 914, 1002 |
| HaeII | RGCGCY | 5 cut(s) | 636, 699, 819, 1083, 1134 |
| HaeIII | GGCC | 4 cut(s) | 101, 194, 1001, 1175 |
| HapII | CCGG | 8 cut(s) | 13, 172, 357, 369, 530, 630, 737, 776 |
| HgaI | GACGC | 2 cut(s) | 898, 1073 |
| HhaI | GCGC | 5 cut(s) | 635, 698, 818, 1082, 1133 |
| Hin1I | GRCGYC | 5 cut(s) | 633, 816, 1010, 1065, 1131 |
| Hin1II | CATG | 3 cut(s) | 346, 715, 775 |
| Hin6I | GCGC | 5 cut(s) | 633, 696, 816, 1080, 1131 |
| HinP1I | GCGC | 5 cut(s) | 633, 696, 816, 1080, 1131 |
| HincII | GTYRAC | 2 cut(s) | 627, 823 |
| HindII | GTYRAC | 2 cut(s) | 627, 823 |
| HindIII | AAGCTT | 1 cut(s) | 603 |
| HinfI | GANTC | 3 cut(s) | 93, 145, 553 |
| HpaI | GTTAAC | 1 cut(s) | 823 |
| HpaII | CCGG | 8 cut(s) | 13, 172, 357, 369, 530, 630, 737, 776 |
| HphI | GGTGA | 6 cut(s) | 175, 299, 307, 385, 565, 853 |
| Hpy166II | GTNNAC | 5 cut(s) | 627, 661, 781, 823, 958 |
| Hpy188I | TCNGA | 4 cut(s) | 613, 691, 1096, 1196 |
| Hpy188III | TCNNGA | 3 cut(s) | 378, 619, 941 |
| Hpy8I | GTNNAC | 5 cut(s) | 627, 661, 781, 823, 958 |
| Hpy99I | CGWCG | 6 cut(s) | 161, 200, 323, 440, 838, 1073 |
| HpyAV | CCTTC | 2 cut(s) | 833, 910 |
| HpyCH4III | ACNGT | 4 cut(s) | 187, 658, 676, 865 |
| HpyCH4IV | ACGT | 8 cut(s) | 273, 462, 644, 827, 885, 903, 929, 1010 |
| HpyCH4V | TGCA | 2 cut(s) | 77, 600 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 26, 548, 1139 |
| HpyF3I | CTNAG | 5 cut(s) | 139, 205, 800, 1026, 1047 |
| HpySE526I | ACGT | 8 cut(s) | 273, 462, 644, 827, 885, 903, 929, 1010 |
| Hsp92I | GRCGYC | 5 cut(s) | 633, 816, 1010, 1065, 1131 |
| Hsp92II | CATG | 3 cut(s) | 346, 715, 775 |
| HspAI | GCGC | 5 cut(s) | 633, 696, 816, 1080, 1131 |
| KasI | GGCGCC | 3 cut(s) | 632, 815, 1130 |
| KroI | GCCGGC | 1 cut(s) | 171 |
| KroNI | GCCGGC | 1 cut(s) | 173 |
| KspAI | GTTAAC | 1 cut(s) | 823 |
| Kzo9I | GATC | 6 cut(s) | 162, 312, 359, 803, 937, 963 |
| LmnI | GCTCC | 6 cut(s) | 54, 329, 547, 1021, 1027, 1093 |
| Lsp1109I | GCAGC | 1 cut(s) | 32 |
| LweI | GCATC | 1 cut(s) | 1075 |
| MaeI | CTAG | 2 cut(s) | 984, 1077 |
| MaeII | ACGT | 8 cut(s) | 273, 462, 644, 827, 885, 903, 929, 1010 |
| MaeIII | GTNAC | 6 cut(s) | 789, 809, 842, 886, 907, 1168 |
| MalI | GATC | 6 cut(s) | 164, 314, 361, 805, 939, 965 |
| MbiI | CCGCTC | 1 cut(s) | 1016 |
| MboI | GATC | 6 cut(s) | 162, 312, 359, 803, 937, 963 |
| MboII | GAAGA | 2 cut(s) | 494, 893 |
| MflI | RGATCY | 1 cut(s) | 359 |
| MhlI | GDGCHC | 1 cut(s) | 1188 |
| MlsI | TGGCCA | 1 cut(s) | 101 |
| MluCI | AATT | 1 cut(s) | 719 |
| MluNI | TGGCCA | 1 cut(s) | 101 |
| Mly113I | GGCGCC | 3 cut(s) | 633, 816, 1131 |
| MlyI | GAGTC | 2 cut(s) | 139, 562 |
| MmeI | TCCRAC | 2 cut(s) | 636, 714 |
| Mox20I | TGGCCA | 1 cut(s) | 101 |
| MroNI | GCCGGC | 1 cut(s) | 171 |
| MscI | TGGCCA | 1 cut(s) | 101 |
| MseI | TTAA | 5 cut(s) | 521, 671, 822, 932, 1005 |
| Msp20I | TGGCCA | 1 cut(s) | 101 |
| MspI | CCGG | 8 cut(s) | 13, 172, 357, 369, 530, 630, 737, 776 |
| MspR9I | CCNGG | 1 cut(s) | 278 |
| MvaI | CCWGG | 1 cut(s) | 278 |
| MvnI | CGCG | 1 cut(s) | 1055 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 26, 548, 1139 |
| NaeI | GCCGGC | 1 cut(s) | 173 |
| NarI | GGCGCC | 3 cut(s) | 633, 816, 1131 |
| NdeII | GATC | 6 cut(s) | 162, 312, 359, 803, 937, 963 |
| NgoMIV | GCCGGC | 1 cut(s) | 171 |
| NlaIII | CATG | 3 cut(s) | 346, 715, 775 |
| NlaIV | GGNNCC | 6 cut(s) | 295, 325, 361, 634, 817, 1132 |
| NmuCI | GTSAC | 2 cut(s) | 886, 907 |
| NspI | RCATGY | 1 cut(s) | 775 |
| PaeI | GCATGC | 1 cut(s) | 775 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 279, 468, 882 |
| PdiI | GCCGGC | 1 cut(s) | 173 |
| PfeI | GAWTC | 1 cut(s) | 93 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 277 |
| PkrI | GCNGC | 1 cut(s) | 22 |
| PleI | GAGTC | 2 cut(s) | 139, 561 |
| PluTI | GGCGCC | 3 cut(s) | 636, 819, 1134 |
| PpsI | GAGTC | 2 cut(s) | 139, 561 |
| Psp1406I | AACGTT | 1 cut(s) | 644 |
| Psp6I | CCWGG | 1 cut(s) | 276 |
| PspFI | CCCAGC | 1 cut(s) | 557 |
| PspGI | CCWGG | 1 cut(s) | 276 |
| PspN4I | GGNNCC | 6 cut(s) | 295, 325, 361, 634, 817, 1132 |
| PspPI | GGNCC | 1 cut(s) | 1073 |
| PsuI | RGATCY | 1 cut(s) | 359 |
| SaqAI | TTAA | 5 cut(s) | 521, 671, 822, 932, 1005 |
| SatI | GCNGC | 1 cut(s) | 21 |
| Sau3AI | GATC | 6 cut(s) | 162, 312, 359, 803, 937, 963 |
| Sau96I | GGNCC | 1 cut(s) | 1073 |
| SchI | GAGTC | 2 cut(s) | 139, 562 |
| ScrFI | CCNGG | 1 cut(s) | 278 |
| SduI | GDGCHC | 1 cut(s) | 1188 |
| SfaNI | GCATC | 1 cut(s) | 1075 |
| SfoI | GGCGCC | 3 cut(s) | 634, 817, 1132 |
| SinI | GGWCC | 1 cut(s) | 1073 |
| SphI | GCATGC | 1 cut(s) | 775 |
| Sse9I | AATT | 1 cut(s) | 719 |
| SsiI | CCGC | 7 cut(s) | 27, 169, 253, 363, 408, 1014, 1055 |
| SspDI | GGCGCC | 3 cut(s) | 632, 815, 1130 |
| SspMI | CTAG | 2 cut(s) | 984, 1077 |
| StyD4I | CCNGG | 1 cut(s) | 276 |
| TaaI | ACNGT | 4 cut(s) | 187, 658, 676, 865 |
| TaiI | ACGT | 8 cut(s) | 276, 465, 647, 830, 888, 906, 932, 1013 |
| TaqI | TCGA | 6 cut(s) | 198, 282, 585, 966, 1031, 1153 |
| TasI | AATT | 1 cut(s) | 719 |
| TfiI | GAWTC | 1 cut(s) | 93 |
| Tru1I | TTAA | 5 cut(s) | 521, 671, 822, 932, 1005 |
| Tru9I | TTAA | 5 cut(s) | 521, 671, 822, 932, 1005 |
| TscAI | CASTG | 1 cut(s) | 340 |
| TseFI | GTSAC | 2 cut(s) | 886, 907 |
| TseI | GCWGC | 1 cut(s) | 20 |
| Tsp45I | GTSAC | 2 cut(s) | 886, 907 |
| TspDTI | ATGAA | 1 cut(s) | 700 |
| TspGWI | ACGGA | 8 cut(s) | 246, 460, 678, 851, 891, 914, 1080, 1086 |
| TspRI | CASTG | 1 cut(s) | 340 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 277 |
| VpaK11BI | GGWCC | 1 cut(s) | 1073 |
| XapI | RAATTY | 1 cut(s) | 719 |
| XceI | RCATGY | 1 cut(s) | 775 |
| XmiI | GTMKAC | 1 cut(s) | 660 |
| XspI | CTAG | 2 cut(s) | 984, 1077 |
| ZraI | GACGTC | 1 cut(s) | 1011 |