Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011444

Physical Location & Seq

Genomic Coordinates Reverse (-)

57807060 .. 57807290

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0450800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGGTGGAGTTTTACGTGATGCTCAAGGTAATTTCAGGGCAGCCTTTGCCCTTCCAGTTTGCAATGTAGCTGCTGCCAAGCAAGTTGAATTGATGGCAATTAATCATGGACTGAAATTCCTGCAGTCTTTCCCCAACCAGCACGTTGTGCTAGAGACATATTGCCTTGAAGCCACCATGGACATTGATAATCCGAGATATGACCTACTCGAGTTTTGCGGCCCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0016020 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

76

Amino Acids

8.45

Weight (kDa)

5.04

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	2 - 56	5.8e-06	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12730
fragaria_vesca	FvH4_6g40590
malus_domestica	MD09G1127000.v1.1 MD17G1117400.v1.1
prunus_persica	Prupe.2G000400_v2.0.a1 Prupe.3G197200_v2.0.a1
pyrus_communis	pycom09g05130 pycom17g10800
rosa_chinensis	RchiOBHm_Chr2g0155911
rosa_laevigata	RLG00000020875
rosa_multiflora	Rmu_sc0002049.1_g000001 Rmu_sc0003417.1_g000026 Rmu_sc0008488.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093390
rosa_rugosa	Rorug02G0450800
rosa_samantha	Rh2AG517400 Rh2BG528600 Rh2CG502100 Rh2DG537700
rosa_wichuraiana	Rw2G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	116
AdeI	CACNNNGTG	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	89, 170
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
Alw26I	GTCTC	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	3 cut(s)	41, 71, 74
ApoI	RAATTY	1 cut(s)	116
AseI	ATTAAT	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	209
BbvI	GCAGC	3 cut(s)	53, 58, 61
BccI	CCATC	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	122
BisI	GCNGC	4 cut(s)	42, 72, 75, 220
BlsI	GCNGC	4 cut(s)	43, 73, 76, 221
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	221
BmsI	GCATC	1 cut(s)	10
BpuEI	CTTGAG	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	56
Bse3DI	GCAATG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	56
BseXI	GCAGC	3 cut(s)	53, 58, 61
BshFI	GGCC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	222
BsoBI	CYCGRG	1 cut(s)	209
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	1 cut(s)	219
BspANI	GGCC	1 cut(s)	222
BspMAI	CTGCAG	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	177
BstAPI	GCANNNNNTGC	2 cut(s)	47, 148
BstBAI	YACGTR	1 cut(s)	17
BstDSI	CCRYGG	1 cut(s)	177
BstMAI	GTCTC	1 cut(s)	149
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 148
BstSFI	CTRYAG	1 cut(s)	122
BstV1I	GCAGC	3 cut(s)	53, 58, 61
BsuRI	GGCC	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	221
CviAII	CATG	2 cut(s)	107, 178
CviJI	RGCY	4 cut(s)	44, 71, 173, 222
CviKI_1	RGCY	4 cut(s)	44, 71, 173, 222
DraIII	CACNNNGTG	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	2 cut(s)	110, 181
FaiI	YATR	4 cut(s)	108, 160, 179, 201
FatI	CATG	2 cut(s)	106, 177
Fnu4HI	GCNGC	4 cut(s)	42, 72, 75, 220
Fsp4HI	GCNGC	4 cut(s)	42, 72, 75, 220
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	4 cut(s)	42, 72, 75, 220
HaeIII	GGCC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	110, 181
Hpy188I	TCNGA	1 cut(s)	195
HpyAV	CCTTC	1 cut(s)	62
HpyCH4IV	ACGT	2 cut(s)	16, 144
HpyCH4V	TGCA	2 cut(s)	63, 124
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 148
HpySE526I	ACGT	2 cut(s)	16, 144
Hsp92II	CATG	2 cut(s)	110, 181
LpnPI	CCDG	4 cut(s)	22, 69, 134, 152
Lsp1109I	GCAGC	3 cut(s)	53, 58, 61
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	2 cut(s)	16, 144
MluCI	AATT	4 cut(s)	31, 89, 99, 116
MseI	TTAA	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	47, 148
NcoI	CCATGG	1 cut(s)	177
NlaIII	CATG	2 cut(s)	110, 181
PaeR7I	CTCGAG	1 cut(s)	209
PkrI	GCNGC	4 cut(s)	43, 73, 76, 221
Ppu21I	YACGTR	1 cut(s)	17
PshBI	ATTAAT	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	221
PspXI	VCTCGAGB	1 cut(s)	209
PstI	CTGCAG	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	4 cut(s)	42, 72, 75, 220
Sau96I	GGNCC	1 cut(s)	221
SetI	ASST	5 cut(s)	19, 31, 73, 147, 207
SfaNI	GCATC	1 cut(s)	10
SfcI	CTRYAG	1 cut(s)	122
Sfr274I	CTCGAG	1 cut(s)	209
SlaI	CTCGAG	1 cut(s)	209
SmlI	CTYRAG	2 cut(s)	24, 209
SmoI	CTYRAG	2 cut(s)	24, 209
Sse9I	AATT	4 cut(s)	31, 89, 99, 116
SsiI	CCGC	1 cut(s)	219
SspMI	CTAG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	177
TaiI	ACGT	2 cut(s)	19, 147
TaqI	TCGA	1 cut(s)	210
TasI	AATT	4 cut(s)	31, 89, 99, 116
TauI	GCSGC	1 cut(s)	222
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseI	GCWGC	3 cut(s)	41, 71, 74
VspI	ATTAAT	1 cut(s)	102
XapI	RAATTY	1 cut(s)	116
XhoI	CTCGAG	1 cut(s)	209
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.