FvH4_6g40590

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
32065806 .. 32068697
2892 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40590.t1

Sequence Viewer

Length: 1221 bp
ATGGCACCACCACCGCCCCTCACCTCCACCCTAGCTCTCTCCCTCTCCGCCATCCTCCTCCTCCTCTTCACCTCCACCTCCCAAGCACACAACATCACACGCATTCTCGCCAAGCACCCCTCTCTCTCCACCTTCAACCACTACCTCACTCTCACCCACCTCGCCGCCGAGATCAACCGCCGCCAGACCATCACCGTTCTCGCCATCGACAATGCCGCCATGGACGCCATCCTCGCCAAGCACTTCTCCATCCCTACCCTCAAGAATGTGCTTTCCCTCCACGTCCTCGTGGATTACTTCGGCGCCAAGAAGCTCCACCAGCTCACCGGTGGCACCACCTTGACCGCCACCATGTTCCAGTCCACCGGCACTGCCGACGGGACCTCCGGCTACGTGAATATCACCAACCTCAAGGGCGGTAAAGTTGGGTTTGGTACTGAAGACAACGATGGGAAGCTCAACTCTTTCTACGAGAAGTCTGTGCAGGAGATCCCATACAATATCTCCGTTCTCCAAATCAGTCAGGTCCTAACTTCAGCTGAAGCAGAGGCGCCAACAGCCGGCCCAAGCGACGTGAACCTAACCTCCATCCTAGCCAAGCAAGGCTGCAAAGCCTTCTCCGACTTGCTGATCTCAACCGGTGCCGACACCACTTTCCAGAACAACGTCGACGGAGGACTCACCGTCTTCTGCCCCACCGACGCCGTGGTCAGTGCCTTCGCTCCCAAGTTCAAAAACCTAACCGCACCACAAAAGCTGGCATTGGTTTTGTACCACGGCATCCCCGTGTACCAGTCCCTCCAGATGTTGAAGTCCAACAATGGTGTCATCAACACTCTTGCCACTGACAAAGCCAACAAGTACGACTTCACGGTGCAGAATGACGGCGAGGAGGTGAGCTTGGAGACCAAGGTGGTGACGGCGAAGATCACCGGAACAGTGTTGGACCAGGATCCTTTAGTGATCTACAAGGTGAACAAAGTGTTGCAGCCAAAGGAGTTGTTTAAGGTGGTGAAGACTAAGGCTGCTCCAAGTCCTAAGAAGGCTGCCGCGCCATCGGAGGATGATGCTGACGCGCCGTCAGAGGACGATGCTGATGCGCCGTCAGAGGATGATTCGGCGGATGCGACGGCGGATGACAATGGAGTGAGTGGATTGATGAAGGGAGGGAATTTGGTTGTGGTTGGTTTGAGTTTGTGCGTTGGGGTTTTGCTTATTTGA

Protein Analysis

407

Amino Acids

42.9

Weight (kDa)

5.37

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 202 - 331 6.9e-15 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 707
AccB1I GGYRCC 5 cut(s) 4, 302, 332, 550, 641
AccI GTMKAC 1 cut(s) 669
AccII CGCG 2 cut(s) 1052, 1076
AclWI GGATC 3 cut(s) 484, 947, 960
AcsI RAATTY 1 cut(s) 1171
AcuI CTGAAG 3 cut(s) 459, 519, 561
AcyI GRCGYC 4 cut(s) 225, 303, 551, 702
AfaI GTAC 4 cut(s) 436, 773, 791, 863
AfiI CCNNNNNNNGG 1 cut(s) 560
AgeI ACCGGT 2 cut(s) 326, 638
AgsI TTSAA 3 cut(s) 136, 733, 811
AhdI GACNNNNNGTC 2 cut(s) 683, 1078
AjiI CACGTC 2 cut(s) 283, 574
AjnI CCWGG 1 cut(s) 948
AloI GAACNNNNNNTCC 2 cut(s) 569, 601
AluBI AGCT 7 cut(s) 35, 313, 322, 457, 539, 757, 900
AluI AGCT 7 cut(s) 35, 313, 322, 457, 539, 757, 900
Alw26I GTCTC 1 cut(s) 899
AlwI GGATC 3 cut(s) 484, 947, 960
AoxI GGCC 1 cut(s) 562
ApeKI GCWGC 4 cut(s) 606, 988, 1025, 1046
ApoI RAATTY 1 cut(s) 1171
AsiGI ACCGGT 2 cut(s) 326, 638
AspLEI GCGC 5 cut(s) 305, 553, 1054, 1078, 1102
AspS9I GGNCC 4 cut(s) 381, 526, 563, 946
AvaII GGWCC 3 cut(s) 381, 526, 946
BamHI GGATCC 1 cut(s) 952
BanI GGYRCC 5 cut(s) 4, 302, 332, 550, 641
BauI CACGAG 1 cut(s) 287
BbsI GAAGAC 3 cut(s) 447, 679, 1022
BbvI GCAGC 4 cut(s) 593, 1000, 1012, 1033
BccI CCATC 8 cut(s) 59, 197, 212, 236, 257, 443, 596, 1063
BceAI ACGGC 7 cut(s) 689, 793, 901, 936, 1063, 1087, 1146
BcgI CGANNNNNNTGC 2 cut(s) 1079, 1113
BciT130I CCWGG 1 cut(s) 950
BcoDI GTCTC 1 cut(s) 899
BfaI CTAG 2 cut(s) 32, 593
BfoI RGCGCY 2 cut(s) 306, 554
BisI GCNGC 8 cut(s) 165, 181, 216, 607, 989, 1026, 1047, 1050
BlsI GCNGC 8 cut(s) 166, 182, 217, 608, 990, 1027, 1048, 1051
Bme1390I CCNGG 1 cut(s) 950
Bme18I GGWCC 3 cut(s) 381, 526, 946
BmeRI GACNNNNNGTC 2 cut(s) 683, 1078
BmgBI CACGTC 2 cut(s) 283, 574
BmgT120I GGNCC 4 cut(s) 381, 526, 563, 946
BmiI GGNNCC 7 cut(s) 6, 304, 334, 382, 552, 643, 954
BmrFI CCNGG 1 cut(s) 950
BmsI GCATC 5 cut(s) 789, 1057, 1081, 1087, 1114
BpiI GAAGAC 3 cut(s) 447, 679, 1022
BpmI CTGGAG 1 cut(s) 785
BpuEI CTTGAG 2 cut(s) 245, 395
BsaAI YACGTR 1 cut(s) 394
BsaHI GRCGYC 4 cut(s) 225, 303, 551, 702
BsaI GGTCTC 1 cut(s) 899
BsaJI CCNNGG 4 cut(s) 219, 705, 775, 909
BsaWI WCCGGW 3 cut(s) 326, 638, 932
BsaXI ACNNNNNCTCC 6 cut(s) 368, 398, 488, 518, 569, 599
Bsc4I CCNNNNNNNGG 1 cut(s) 560
Bse118I RCCGGY 4 cut(s) 326, 365, 560, 638
Bse1I ACTGG 2 cut(s) 358, 793
BseBI CCWGG 1 cut(s) 950
BseDI CCNNGG 4 cut(s) 219, 705, 775, 909
BseGI GGATG 9 cut(s) 51, 228, 249, 588, 780, 1069, 1117, 1129, 1141
BseLI CCNNNNNNNGG 1 cut(s) 560
BseNI ACTGG 2 cut(s) 358, 793
BseRI GAGGAG 4 cut(s) 47, 50, 53, 905
BseXI GCAGC 4 cut(s) 593, 1000, 1012, 1033
BsgI GTGCAG 2 cut(s) 503, 896
Bsh1236I CGCG 2 cut(s) 1052, 1076
BshFI GGCC 1 cut(s) 564
BshNI GGYRCC 5 cut(s) 4, 302, 332, 550, 641
BshTI ACCGGT 2 cut(s) 326, 638
BsiSI CCGG 6 cut(s) 327, 366, 387, 561, 639, 933
BslFI GGGAC 2 cut(s) 394, 781
BslI CCNNNNNNNGG 1 cut(s) 560
BsmAI GTCTC 1 cut(s) 899
BsmFI GGGAC 2 cut(s) 394, 781
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 1 cut(s) 564
Bso31I GGTCTC 1 cut(s) 899
Bsp143I GATC 6 cut(s) 171, 489, 630, 927, 952, 963
Bsp19I CCATGG 1 cut(s) 219
BspANI GGCC 1 cut(s) 564
BspFNI CGCG 2 cut(s) 1052, 1076
BspLI GGNNCC 7 cut(s) 6, 304, 334, 382, 552, 643, 954
BspPI GGATC 3 cut(s) 484, 947, 960
BspT107I GGYRCC 5 cut(s) 4, 302, 332, 550, 641
BspTNI GGTCTC 1 cut(s) 899
BsrFI RCCGGY 4 cut(s) 326, 365, 560, 638
BsrI ACTGG 2 cut(s) 358, 793
BssAI RCCGGY 4 cut(s) 326, 365, 560, 638
BssECI CCNNGG 4 cut(s) 219, 705, 775, 909
BssMI GATC 6 cut(s) 171, 489, 630, 927, 952, 963
BssNI GRCGYC 4 cut(s) 225, 303, 551, 702
BssSI CACGAG 1 cut(s) 287
BssT1I CCWWGG 2 cut(s) 219, 909
Bst2BI CACGAG 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 950
Bst4CI ACNGT 4 cut(s) 196, 685, 874, 940
Bst6I CTCTTC 1 cut(s) 71
BstACI GRCGYC 4 cut(s) 225, 303, 551, 702
BstBAI YACGTR 1 cut(s) 394
BstC8I GCNNGC 2 cut(s) 562, 759
BstDEI CTNAG 2 cut(s) 1020, 1038
BstDSI CCRYGG 3 cut(s) 219, 705, 775
BstF5I GGATG 9 cut(s) 51, 228, 249, 588, 780, 1069, 1117, 1129, 1141
BstFNI CGCG 2 cut(s) 1052, 1076
BstH2I RGCGCY 2 cut(s) 306, 554
BstHHI GCGC 5 cut(s) 305, 553, 1054, 1078, 1102
BstKTI GATC 6 cut(s) 174, 492, 633, 930, 955, 966
BstMAI GTCTC 1 cut(s) 899
BstMBI GATC 6 cut(s) 171, 489, 630, 927, 952, 963
BstMWI GCNNNNNNNGC 4 cut(s) 224, 233, 319, 557
BstNI CCWGG 1 cut(s) 950
BstSCI CCNGG 1 cut(s) 948
BstUI CGCG 2 cut(s) 1052, 1076
BstV1I GCAGC 4 cut(s) 593, 1000, 1012, 1033
BstV2I GAAGAC 3 cut(s) 447, 679, 1022
BstX2I RGATCY 2 cut(s) 489, 952
BstYI RGATCY 2 cut(s) 489, 952
BsuRI GGCC 1 cut(s) 564
BtgI CCRYGG 3 cut(s) 219, 705, 775
BtrI CACGTC 2 cut(s) 283, 574
BtsCI GGATG 9 cut(s) 51, 228, 249, 588, 780, 1069, 1117, 1129, 1141
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 4 cut(s) 369, 718, 843, 945
Cac8I GCNNGC 2 cut(s) 562, 759
CfoI GCGC 5 cut(s) 305, 553, 1054, 1078, 1102
Cfr10I RCCGGY 4 cut(s) 326, 365, 560, 638
Cfr13I GGNCC 4 cut(s) 381, 526, 563, 946
CseI GACGC 3 cut(s) 233, 710, 1082
Csp6I GTAC 4 cut(s) 435, 772, 790, 862
CspAI ACCGGT 2 cut(s) 326, 638
CviAII CATG 2 cut(s) 220, 352
CviQI GTAC 4 cut(s) 435, 772, 790, 862
DdeI CTNAG 2 cut(s) 1020, 1038
DinI GGCGCC 2 cut(s) 304, 552
DpnI GATC 6 cut(s) 173, 491, 632, 929, 954, 965
DpnII GATC 6 cut(s) 171, 489, 630, 927, 952, 963
DrdI GACNNNNNNGTC 1 cut(s) 707
DriI GACNNNNNGTC 2 cut(s) 683, 1078
DseDI GACNNNNNNGTC 1 cut(s) 707
Eam1104I CTCTTC 1 cut(s) 71
Eam1105I GACNNNNNGTC 2 cut(s) 683, 1078
EarI CTCTTC 1 cut(s) 71
EciI GGCGGA 3 cut(s) 37, 1136, 1148
Eco130I CCWWGG 2 cut(s) 219, 909
Eco31I GGTCTC 1 cut(s) 899
Eco47I GGWCC 3 cut(s) 381, 526, 946
Eco57I CTGAAG 3 cut(s) 459, 519, 561
EcoO109I RGGNCCY 2 cut(s) 381, 526
EcoRII CCWGG 1 cut(s) 948
EcoT14I CCWWGG 2 cut(s) 219, 909
EgeI GGCGCC 2 cut(s) 304, 552
EheI GGCGCC 2 cut(s) 304, 552
ErhI CCWWGG 2 cut(s) 219, 909
FaeI CATG 2 cut(s) 223, 355
FaiI YATR 3 cut(s) 221, 353, 496
FalI AAGNNNNNCTT 2 cut(s) 851, 883
FaqI GGGAC 2 cut(s) 394, 781
FatI CATG 2 cut(s) 219, 351
FblI GTMKAC 1 cut(s) 669
Fnu4HI GCNGC 8 cut(s) 165, 181, 216, 607, 989, 1026, 1047, 1050
FokI GGATG 9 cut(s) 38, 215, 236, 575, 767, 1076, 1124, 1136, 1148
Fsp4HI GCNGC 8 cut(s) 165, 181, 216, 607, 989, 1026, 1047, 1050
FspBI CTAG 2 cut(s) 32, 593
GlaI GCGC 5 cut(s) 304, 552, 1053, 1077, 1101
GluI GCNGC 8 cut(s) 165, 181, 216, 607, 989, 1026, 1047, 1050
GsuI CTGGAG 1 cut(s) 785
HaeII RGCGCY 2 cut(s) 306, 554
HaeIII GGCC 1 cut(s) 564
HapII CCGG 6 cut(s) 327, 366, 387, 561, 639, 933
HgaI GACGC 3 cut(s) 233, 710, 1082
HhaI GCGC 5 cut(s) 305, 553, 1054, 1078, 1102
Hin1I GRCGYC 4 cut(s) 225, 303, 551, 702
Hin1II CATG 2 cut(s) 223, 355
Hin6I GCGC 5 cut(s) 303, 551, 1052, 1076, 1100
HinP1I GCGC 5 cut(s) 303, 551, 1052, 1076, 1100
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HinfI GANTC 2 cut(s) 678, 1115
HpaII CCGG 6 cut(s) 327, 366, 387, 561, 639, 933
Hpy166II GTNNAC 5 cut(s) 363, 577, 670, 790, 976
Hpy188I TCNGA 4 cut(s) 622, 1060, 1084, 1108
Hpy188III TCNNGA 3 cut(s) 262, 658, 802
Hpy8I GTNNAC 5 cut(s) 363, 577, 670, 790, 976
Hpy99I CGWCG 6 cut(s) 380, 575, 671, 674, 704, 1132
HpyAV CCTTC 5 cut(s) 142, 625, 727, 1036, 1156
HpyCH4III ACNGT 4 cut(s) 196, 685, 874, 940
HpyCH4IV ACGT 4 cut(s) 282, 393, 573, 666
HpyCH4V TGCA 4 cut(s) 484, 609, 877, 988
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 233, 319, 557
HpyF3I CTNAG 2 cut(s) 1020, 1038
HpySE526I ACGT 4 cut(s) 282, 393, 573, 666
Hsp92I GRCGYC 4 cut(s) 225, 303, 551, 702
Hsp92II CATG 2 cut(s) 223, 355
HspAI GCGC 5 cut(s) 303, 551, 1052, 1076, 1100
KasI GGCGCC 2 cut(s) 302, 550
KroI GCCGGC 1 cut(s) 560
KroNI GCCGGC 1 cut(s) 562
Kzo9I GATC 6 cut(s) 171, 489, 630, 927, 952, 963
LmnI GCTCC 3 cut(s) 318, 727, 1033
Lsp1109I GCAGC 4 cut(s) 593, 1000, 1012, 1033
LweI GCATC 5 cut(s) 789, 1057, 1081, 1087, 1114
MaeI CTAG 2 cut(s) 32, 593
MaeII ACGT 4 cut(s) 282, 393, 573, 666
MaeIII GTNAC 1 cut(s) 916
MalI GATC 6 cut(s) 173, 491, 632, 929, 954, 965
MboI GATC 6 cut(s) 171, 489, 630, 927, 952, 963
MboII GAAGA 5 cut(s) 58, 452, 679, 937, 1027
MflI RGATCY 2 cut(s) 489, 952
MluCI AATT 1 cut(s) 1171
Mly113I GGCGCC 2 cut(s) 303, 551
MlyI GAGTC 1 cut(s) 672
MmeI TCCRAC 3 cut(s) 645, 840, 924
MroNI GCCGGC 1 cut(s) 560
MseI TTAA 1 cut(s) 1005
MslI CAYNNNNRTG 1 cut(s) 785
MspA1I CMGCKG 1 cut(s) 539
MspI CCGG 6 cut(s) 327, 366, 387, 561, 639, 933
MspR9I CCNGG 1 cut(s) 950
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 1 cut(s) 950
MvnI CGCG 2 cut(s) 1052, 1076
MwoI GCNNNNNNNGC 4 cut(s) 224, 233, 319, 557
NaeI GCCGGC 1 cut(s) 562
NarI GGCGCC 2 cut(s) 303, 551
NcoI CCATGG 1 cut(s) 219
NdeII GATC 6 cut(s) 171, 489, 630, 927, 952, 963
NgoMIV GCCGGC 1 cut(s) 560
NlaIII CATG 2 cut(s) 223, 355
NlaIV GGNNCC 7 cut(s) 6, 304, 334, 382, 552, 643, 954
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 916
PcsI WCGNNNNNNNCGW 2 cut(s) 783, 1124
PctI GAATGC 1 cut(s) 102
PdiI GCCGGC 1 cut(s) 562
PfeI GAWTC 1 cut(s) 1115
PinAI ACCGGT 2 cut(s) 326, 638
PkrI GCNGC 8 cut(s) 166, 182, 217, 608, 990, 1027, 1048, 1051
PleI GAGTC 1 cut(s) 672
PluTI GGCGCC 2 cut(s) 306, 554
PpsI GAGTC 1 cut(s) 672
Ppu21I YACGTR 1 cut(s) 394
PpuMI RGGWCCY 2 cut(s) 381, 526
Psp5II RGGWCCY 2 cut(s) 381, 526
Psp6I CCWGG 1 cut(s) 948
PspGI CCWGG 1 cut(s) 948
PspN4I GGNNCC 7 cut(s) 6, 304, 334, 382, 552, 643, 954
PspPI GGNCC 4 cut(s) 381, 526, 563, 946
PspPPI RGGWCCY 2 cut(s) 381, 526
PsuI RGATCY 2 cut(s) 489, 952
PvuII CAGCTG 1 cut(s) 539
RsaI GTAC 4 cut(s) 436, 773, 791, 863
RsaNI GTAC 4 cut(s) 435, 772, 790, 862
RseI CAYNNNNRTG 1 cut(s) 785
SalI GTCGAC 1 cut(s) 668
SaqAI TTAA 1 cut(s) 1005
SatI GCNGC 8 cut(s) 165, 181, 216, 607, 989, 1026, 1047, 1050
Sau3AI GATC 6 cut(s) 171, 489, 630, 927, 952, 963
Sau96I GGNCC 4 cut(s) 381, 526, 563, 946
SchI GAGTC 1 cut(s) 672
ScrFI CCNGG 1 cut(s) 950
SfaNI GCATC 5 cut(s) 789, 1057, 1081, 1087, 1114
SfoI GGCGCC 2 cut(s) 304, 552
SgrAI CRCCGGYG 1 cut(s) 326
SgrDI CGTCGACG 1 cut(s) 668
SinI GGWCC 3 cut(s) 381, 526, 946
SmiMI CAYNNNNRTG 1 cut(s) 785
SmlI CTYRAG 2 cut(s) 260, 410
SmoI CTYRAG 2 cut(s) 260, 410
Sse9I AATT 1 cut(s) 1171
SspDI GGCGCC 2 cut(s) 302, 550
SspMI CTAG 2 cut(s) 32, 593
StyD4I CCNGG 1 cut(s) 948
StyI CCWWGG 2 cut(s) 219, 909
TaaI ACNGT 4 cut(s) 196, 685, 874, 940
TaiI ACGT 4 cut(s) 285, 396, 576, 669
TaqI TCGA 2 cut(s) 207, 669
TasI AATT 1 cut(s) 1171
TauI GCSGC 4 cut(s) 167, 183, 218, 1052
TfiI GAWTC 1 cut(s) 1115
Tru1I TTAA 1 cut(s) 1005
Tru9I TTAA 1 cut(s) 1005
TscAI CASTG 4 cut(s) 376, 718, 850, 945
TseFI GTSAC 1 cut(s) 916
TseI GCWGC 4 cut(s) 606, 988, 1025, 1046
Tsp45I GTSAC 1 cut(s) 916
TspDTI ATGAA 1 cut(s) 1175
TspGWI ACGGA 2 cut(s) 496, 687
TspRI CASTG 4 cut(s) 376, 718, 850, 945
VpaK11BI GGWCC 3 cut(s) 381, 526, 946
XapI RAATTY 1 cut(s) 1171
XcmI CCANNNNNNNNNTGG 2 cut(s) 326, 703
XmiI GTMKAC 1 cut(s) 669
XspI CTAG 2 cut(s) 32, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.