RLG00000020875

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
69722692 .. 69724600
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020875

Sequence Viewer

Length: 1227 bp
ATGGCAACGCCACGGCCCCTCACCTCCACCCTAGCTCTCTCCCTCTCCGCTTTCCTCCTCCTCCTCCTCCTCCTCTCCTCCACCTCCCAAGCACACAACATCACCCGCATTCTCGCCAAGCACCCCGAGCTCTCCACTTTCAACCACTACCTCACCATCACCCACCTCGCCGCCGAGATCAACCGCCGCCAGACCATCACCGTCCTTGCCATCGACAATGCCGCCATGTCCGCCATCCTCGCCAAGCACCTATCAATTCCAACCCTCAAGAATGTGCTCTCCCTCCACGTCCTCGTGGATTACTTCGGTGCCAAGAAGCTCCACCAGCTCACCGGCGGCTCCACCTTGACCGCCAGCATGTTCCAGTCCACCGGCACGGCGGACGGGACCACCGGGTACGTGAACATCACCAACCTCAAGGGTGGTAAAGTTGGGTTCGGTACTGAAGATAACAATGGGAAGCTCAACTCCTTCTACCAGAAGTCTGTGCAGGAGATCCCATACAATATCTCTGTGCTCCAAATCAGTCAGGTCCTAACTTCAGCTGAAGCAGAGGCGCCAACTGCCGGTCCAAGCGACGTGAACCTAACCTCCATCCTAGCCAAGCAAGGCTGCAAAGCCTTCTCCGACATGCTGATCGCAACCGGTGCCGCCGCCACTTTCCAGACAAACGTCGACGGAGGCCTGACCGTCTTCTGCCCCACCGACGCCGTCATCTCTGCCTTCGCCCCCCAGTACAAAAACCTAACGACACCGCAAAAGCTGGCGTTGGTTTTGTACCACGGCATCCCCGTGTACCAGTCCCTCCAGATGTTGAAGTCCAACAACGGAGTCATCAACACTCTGGCCACAGACAAGACCAACAAGTACGACTTCACGGTGCAAAACGACGGCGAGGAGGTGAGCTTGGAGACCAAGGTCGTGACGGCGAAGATCACCGGAACCGTGCTGGATCAGGATCCTTTAGTGATCTACAAGGTGAACAAAGTTTTGCAGCCAAAGGAGCTGTTTAAGGTGGTGAAGACTAAGGCGGCTCCGGCCCCCAAGGAGGCCGCCGCCCCGTCGGATGACAATGCTGACGCGCCGTCAGAGGACGATGCTGACGCGCCGTCGGAGGATGATTCGGCGGATGCCAAGGCGGATGATAATGGAGTGAGTGGATTGATGAAGGGCGGGAGATTGGTTGTGGCTGGTTTGAGTTTGTGCATTGGGGTTTTGCTTATGTGA

Protein Analysis

409

Amino Acids

43.19

Weight (kDa)

5.91

Isoelectric Point (pI)

32.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 43 - 135 7.4e-06 Fasciclin domain
Fasciclin PF02469 204 - 333 1.6e-14 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 308, 556, 647
AccI GTMKAC 1 cut(s) 675
AccII CGCG 2 cut(s) 1082, 1106
AclWI GGATC 4 cut(s) 490, 953, 960, 966
AcoI YGGCCR 1 cut(s) 846
AcuI CTGAAG 3 cut(s) 465, 525, 567
AcyI GRCGYC 2 cut(s) 557, 708
AfaI GTAC 6 cut(s) 398, 442, 737, 779, 797, 869
AfiI CCNNNNNNNGG 2 cut(s) 566, 1048
AgeI ACCGGT 1 cut(s) 644
AgsI TTSAA 2 cut(s) 142, 817
AhdI GACNNNNNGTC 2 cut(s) 1084, 1108
AjiI CACGTC 2 cut(s) 289, 580
AloI GAACNNNNNNTCC 2 cut(s) 575, 607
AluBI AGCT 9 cut(s) 35, 130, 319, 328, 463, 545, 763, 906, 1006
AluI AGCT 9 cut(s) 35, 130, 319, 328, 463, 545, 763, 906, 1006
Alw21I GWGCWC 3 cut(s) 132, 279, 519
Alw26I GTCTC 1 cut(s) 905
AlwI GGATC 4 cut(s) 490, 953, 960, 966
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 5 cut(s) 14, 682, 846, 1038, 1050
ApeKI GCWGC 2 cut(s) 612, 994
AsiGI ACCGGT 1 cut(s) 644
AspLEI GCGC 3 cut(s) 559, 1084, 1108
AspS9I GGNCC 5 cut(s) 15, 387, 532, 569, 1039
AsuC2I CCSGG 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 3 cut(s) 387, 532, 569
BalI TGGCCA 1 cut(s) 848
BamHI GGATCC 1 cut(s) 958
BanI GGYRCC 3 cut(s) 308, 556, 647
BanII GRGCYC 1 cut(s) 132
BauI CACGAG 1 cut(s) 293
BbsI GAAGAC 2 cut(s) 685, 1028
Bbv12I GWGCWC 3 cut(s) 132, 279, 519
BbvI GCAGC 2 cut(s) 599, 1006
BccI CCATC 5 cut(s) 164, 203, 218, 242, 602
BceAI ACGGC 8 cut(s) 29, 393, 695, 799, 907, 942, 1069, 1093
BcnI CCSGG 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 905
BfaI CTAG 2 cut(s) 32, 599
BfoI RGCGCY 1 cut(s) 560
Bme1390I CCNGG 1 cut(s) 394
Bme18I GGWCC 3 cut(s) 387, 532, 569
BmeRI GACNNNNNGTC 2 cut(s) 1084, 1108
BmeT110I CYCGRG 1 cut(s) 125
BmgBI CACGTC 2 cut(s) 289, 580
BmgT120I GGNCC 5 cut(s) 15, 387, 532, 569, 1039
BmrFI CCNGG 1 cut(s) 394
BmrI ACTGGG 1 cut(s) 727
BmsI GCATC 3 cut(s) 795, 1087, 1120
BmuI ACTGGG 1 cut(s) 727
BoxI GACNNNNGTC 2 cut(s) 671, 917
BpiI GAAGAC 2 cut(s) 685, 1028
BpmI CTGGAG 1 cut(s) 791
BpuEI CTTGAG 2 cut(s) 251, 401
BpuMI CCSGG 1 cut(s) 394
BsaAI YACGTR 1 cut(s) 400
BsaBI GATNNNNATC 1 cut(s) 957
BsaHI GRCGYC 2 cut(s) 557, 708
BsaI GGTCTC 1 cut(s) 905
BsaJI CCNNGG 5 cut(s) 11, 781, 915, 1044, 1134
BsaWI WCCGGW 2 cut(s) 644, 938
BsaXI ACNNNNNCTCC 2 cut(s) 575, 605
Bsc4I CCNNNNNNNGG 2 cut(s) 566, 1048
Bse118I RCCGGY 4 cut(s) 332, 371, 566, 644
Bse1I ACTGG 3 cut(s) 364, 733, 799
Bse8I GATNNNNATC 1 cut(s) 957
BseDI CCNNGG 5 cut(s) 11, 781, 915, 1044, 1134
BseGI GGATG 7 cut(s) 234, 594, 786, 1072, 1123, 1135, 1147
BseJI GATNNNNATC 1 cut(s) 957
BseLI CCNNNNNNNGG 2 cut(s) 566, 1048
BseNI ACTGG 3 cut(s) 364, 733, 799
BseRI GAGGAG 8 cut(s) 47, 50, 53, 56, 59, 62, 67, 911
BseXI GCAGC 2 cut(s) 599, 1006
BsgI GTGCAG 1 cut(s) 509
Bsh1236I CGCG 2 cut(s) 1082, 1106
BshFI GGCC 5 cut(s) 16, 684, 848, 1040, 1052
BshNI GGYRCC 3 cut(s) 308, 556, 647
BshTI ACCGGT 1 cut(s) 644
BsiHKAI GWGCWC 3 cut(s) 132, 279, 519
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 7 cut(s) 333, 372, 393, 567, 645, 939, 1037
BslFI GGGAC 2 cut(s) 400, 787
BslI CCNNNNNNNGG 2 cut(s) 566, 1048
BsmAI GTCTC 1 cut(s) 905
BsmFI GGGAC 2 cut(s) 400, 787
BsmI GAATGC 1 cut(s) 108
BsnI GGCC 5 cut(s) 16, 684, 848, 1040, 1052
Bso31I GGTCTC 1 cut(s) 905
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 3 cut(s) 132, 279, 519
Bsp143I GATC 7 cut(s) 177, 495, 636, 933, 952, 958, 969
BspANI GGCC 5 cut(s) 16, 684, 848, 1040, 1052
BspFNI CGCG 2 cut(s) 1082, 1106
BspPI GGATC 4 cut(s) 490, 953, 960, 966
BspT107I GGYRCC 3 cut(s) 308, 556, 647
BspTNI GGTCTC 1 cut(s) 905
BsrFI RCCGGY 4 cut(s) 332, 371, 566, 644
BsrI ACTGG 3 cut(s) 364, 733, 799
BssAI RCCGGY 4 cut(s) 332, 371, 566, 644
BssECI CCNNGG 5 cut(s) 11, 781, 915, 1044, 1134
BssMI GATC 7 cut(s) 177, 495, 636, 933, 952, 958, 969
BssNI GRCGYC 2 cut(s) 557, 708
BssSI CACGAG 1 cut(s) 293
BssT1I CCWWGG 3 cut(s) 915, 1044, 1134
Bst2BI CACGAG 1 cut(s) 293
Bst4CI ACNGT 4 cut(s) 202, 691, 880, 946
BstACI GRCGYC 2 cut(s) 557, 708
BstAPI GCANNNNNTGC 1 cut(s) 647
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 2 cut(s) 355, 765
BstDEI CTNAG 1 cut(s) 1026
BstDSI CCRYGG 2 cut(s) 11, 781
BstF5I GGATG 7 cut(s) 234, 594, 786, 1072, 1123, 1135, 1147
BstFNI CGCG 2 cut(s) 1082, 1106
BstH2I RGCGCY 1 cut(s) 560
BstHHI GCGC 3 cut(s) 559, 1084, 1108
BstKTI GATC 7 cut(s) 180, 498, 639, 936, 955, 961, 972
BstMAI GTCTC 1 cut(s) 905
BstMBI GATC 7 cut(s) 177, 495, 636, 933, 952, 958, 969
BstMWI GCNNNNNNNGC 8 cut(s) 127, 230, 239, 325, 563, 647, 1003, 1037
BstNSI RCATGY 2 cut(s) 361, 634
BstPAI GACNNNNGTC 2 cut(s) 671, 917
BstSCI CCNGG 1 cut(s) 392
BstUI CGCG 2 cut(s) 1082, 1106
BstV1I GCAGC 2 cut(s) 599, 1006
BstV2I GAAGAC 2 cut(s) 685, 1028
BstX2I RGATCY 2 cut(s) 495, 958
BstYI RGATCY 2 cut(s) 495, 958
BsuRI GGCC 5 cut(s) 16, 684, 848, 1040, 1052
BtgI CCRYGG 2 cut(s) 11, 781
BtrI CACGTC 2 cut(s) 289, 580
BtsCI GGATG 7 cut(s) 234, 594, 786, 1072, 1123, 1135, 1147
Cac8I GCNNGC 2 cut(s) 355, 765
CfoI GCGC 3 cut(s) 559, 1084, 1108
Cfr10I RCCGGY 4 cut(s) 332, 371, 566, 644
Cfr13I GGNCC 5 cut(s) 15, 387, 532, 569, 1039
CseI GACGC 3 cut(s) 716, 1088, 1112
Csp6I GTAC 6 cut(s) 397, 441, 736, 778, 796, 868
CspAI ACCGGT 1 cut(s) 644
CviAII CATG 3 cut(s) 226, 358, 631
CviQI GTAC 6 cut(s) 397, 441, 736, 778, 796, 868
DdeI CTNAG 1 cut(s) 1026
DinI GGCGCC 1 cut(s) 558
DpnI GATC 7 cut(s) 179, 497, 638, 935, 954, 960, 971
DpnII GATC 7 cut(s) 177, 495, 636, 933, 952, 958, 969
DriI GACNNNNNGTC 2 cut(s) 1084, 1108
EaeI YGGCCR 1 cut(s) 846
Eam1105I GACNNNNNGTC 2 cut(s) 1084, 1108
EciI GGCGGA 4 cut(s) 220, 395, 1142, 1154
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 3 cut(s) 915, 1044, 1134
Eco147I AGGCCT 1 cut(s) 684
Eco24I GRGCYC 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 905
Eco47I GGWCC 3 cut(s) 387, 532, 569
Eco53kI GAGCTC 1 cut(s) 130
Eco57I CTGAAG 3 cut(s) 465, 525, 567
Eco88I CYCGRG 1 cut(s) 125
EcoICRI GAGCTC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 532
EcoT14I CCWWGG 3 cut(s) 915, 1044, 1134
EcoT38I GRGCYC 1 cut(s) 132
EgeI GGCGCC 1 cut(s) 558
EheI GGCGCC 1 cut(s) 558
ErhI CCWWGG 3 cut(s) 915, 1044, 1134
FaeI CATG 3 cut(s) 229, 361, 634
FaiI YATR 5 cut(s) 227, 359, 502, 632, 1223
FalI AAGNNNNNCTT 2 cut(s) 857, 889
FaqI GGGAC 2 cut(s) 400, 787
FatI CATG 3 cut(s) 225, 357, 630
FauI CCCGC 2 cut(s) 113, 1166
FblI GTMKAC 1 cut(s) 675
FokI GGATG 7 cut(s) 221, 581, 773, 1079, 1130, 1142, 1154
FriOI GRGCYC 1 cut(s) 132
FspBI CTAG 2 cut(s) 32, 599
GlaI GCGC 3 cut(s) 558, 1083, 1107
GsuI CTGGAG 1 cut(s) 791
HaeII RGCGCY 1 cut(s) 560
HaeIII GGCC 5 cut(s) 16, 684, 848, 1040, 1052
HapII CCGG 7 cut(s) 333, 372, 393, 567, 645, 939, 1037
HgaI GACGC 3 cut(s) 716, 1088, 1112
HhaI GCGC 3 cut(s) 559, 1084, 1108
Hin1I GRCGYC 2 cut(s) 557, 708
Hin1II CATG 3 cut(s) 229, 361, 634
Hin6I GCGC 3 cut(s) 557, 1082, 1106
HinP1I GCGC 3 cut(s) 557, 1082, 1106
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HinfI GANTC 2 cut(s) 831, 1121
HpaII CCGG 7 cut(s) 333, 372, 393, 567, 645, 939, 1037
Hpy166II GTNNAC 6 cut(s) 369, 403, 583, 676, 796, 982
Hpy188I TCNGA 4 cut(s) 628, 1066, 1090, 1114
Hpy188III TCNNGA 5 cut(s) 268, 664, 808, 922, 956
Hpy8I GTNNAC 6 cut(s) 369, 403, 583, 676, 796, 982
Hpy99I CGWCG 7 cut(s) 581, 677, 680, 710, 893, 1066, 1114
HpyAV CCTTC 4 cut(s) 481, 631, 733, 1162
HpyCH4III ACNGT 4 cut(s) 202, 691, 880, 946
HpyCH4IV ACGT 4 cut(s) 288, 399, 579, 672
HpyCH4V TGCA 5 cut(s) 490, 615, 883, 994, 1206
HpyF10VI GCNNNNNNNGC 8 cut(s) 127, 230, 239, 325, 563, 647, 1003, 1037
HpyF3I CTNAG 1 cut(s) 1026
HpySE526I ACGT 4 cut(s) 288, 399, 579, 672
Hsp92I GRCGYC 2 cut(s) 557, 708
Hsp92II CATG 3 cut(s) 229, 361, 634
HspAI GCGC 3 cut(s) 557, 1082, 1106
KasI GGCGCC 1 cut(s) 556
Kzo9I GATC 7 cut(s) 177, 495, 636, 933, 952, 958, 969
LmnI GCTCC 5 cut(s) 324, 344, 522, 1003, 1039
Lsp1109I GCAGC 2 cut(s) 599, 1006
LweI GCATC 3 cut(s) 795, 1087, 1120
MaeI CTAG 2 cut(s) 32, 599
MaeII ACGT 4 cut(s) 288, 399, 579, 672
MaeIII GTNAC 1 cut(s) 922
MalI GATC 7 cut(s) 179, 497, 638, 935, 954, 960, 971
MboI GATC 7 cut(s) 177, 495, 636, 933, 952, 958, 969
MboII GAAGA 4 cut(s) 458, 685, 943, 1033
MflI RGATCY 2 cut(s) 495, 958
MhlI GDGCHC 3 cut(s) 132, 279, 519
MlsI TGGCCA 1 cut(s) 848
MluCI AATT 1 cut(s) 255
MluNI TGGCCA 1 cut(s) 848
Mly113I GGCGCC 1 cut(s) 557
MlyI GAGTC 1 cut(s) 840
MmeI TCCRAC 5 cut(s) 284, 651, 846, 1044, 1092
Mox20I TGGCCA 1 cut(s) 848
MscI TGGCCA 1 cut(s) 848
MseI TTAA 1 cut(s) 1011
MslI CAYNNNNRTG 1 cut(s) 791
Msp20I TGGCCA 1 cut(s) 848
MspA1I CMGCKG 1 cut(s) 545
MspI CCGG 7 cut(s) 333, 372, 393, 567, 645, 939, 1037
MspR9I CCNGG 1 cut(s) 394
Mva1269I GAATGC 1 cut(s) 108
MvnI CGCG 2 cut(s) 1082, 1106
MwoI GCNNNNNNNGC 8 cut(s) 127, 230, 239, 325, 563, 647, 1003, 1037
NarI GGCGCC 1 cut(s) 557
NciI CCSGG 1 cut(s) 394
NdeII GATC 7 cut(s) 177, 495, 636, 933, 952, 958, 969
NlaIII CATG 3 cut(s) 229, 361, 634
NmeAIII GCCGAG 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 922
NspI RCATGY 2 cut(s) 361, 634
PceI AGGCCT 1 cut(s) 684
PcsI WCGNNNNNNNCGW 1 cut(s) 789
PctI GAATGC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 1121
PflFI GACNNNGTC 1 cut(s) 710
PinAI ACCGGT 1 cut(s) 644
PleI GAGTC 1 cut(s) 839
PluTI GGCGCC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 839
Ppu21I YACGTR 1 cut(s) 400
PpuMI RGGWCCY 1 cut(s) 532
PshAI GACNNNNGTC 2 cut(s) 671, 917
Psp124BI GAGCTC 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 532
PspPI GGNCC 5 cut(s) 15, 387, 532, 569, 1039
PspPPI RGGWCCY 1 cut(s) 532
PsuI RGATCY 2 cut(s) 495, 958
PsyI GACNNNGTC 1 cut(s) 710
PvuII CAGCTG 1 cut(s) 545
RsaI GTAC 6 cut(s) 398, 442, 737, 779, 797, 869
RsaNI GTAC 6 cut(s) 397, 441, 736, 778, 796, 868
RseI CAYNNNNRTG 1 cut(s) 791
SacI GAGCTC 1 cut(s) 132
SalI GTCGAC 1 cut(s) 674
SaqAI TTAA 1 cut(s) 1011
Sau3AI GATC 7 cut(s) 177, 495, 636, 933, 952, 958, 969
Sau96I GGNCC 5 cut(s) 15, 387, 532, 569, 1039
SchI GAGTC 1 cut(s) 840
ScrFI CCNGG 1 cut(s) 394
SduI GDGCHC 3 cut(s) 132, 279, 519
SfaNI GCATC 3 cut(s) 795, 1087, 1120
SfoI GGCGCC 1 cut(s) 558
SgrAI CRCCGGYG 1 cut(s) 332
SgrDI CGTCGACG 1 cut(s) 674
SinI GGWCC 3 cut(s) 387, 532, 569
SmiMI CAYNNNNRTG 1 cut(s) 791
SmlI CTYRAG 2 cut(s) 266, 416
SmoI CTYRAG 2 cut(s) 266, 416
Sse9I AATT 1 cut(s) 255
SseBI AGGCCT 1 cut(s) 684
SspDI GGCGCC 1 cut(s) 556
SspMI CTAG 2 cut(s) 32, 599
SstI GAGCTC 1 cut(s) 132
StuI AGGCCT 1 cut(s) 684
StyD4I CCNGG 1 cut(s) 392
StyI CCWWGG 3 cut(s) 915, 1044, 1134
TaaI ACNGT 4 cut(s) 202, 691, 880, 946
TaiI ACGT 4 cut(s) 291, 402, 582, 675
TaqI TCGA 2 cut(s) 213, 675
TasI AATT 1 cut(s) 255
TatI WGTACW 1 cut(s) 735
TauI GCSGC 9 cut(s) 173, 189, 224, 339, 653, 656, 1034, 1055, 1058
TfiI GAWTC 1 cut(s) 1121
Tru1I TTAA 1 cut(s) 1011
Tru9I TTAA 1 cut(s) 1011
TseFI GTSAC 1 cut(s) 922
TseI GCWGC 2 cut(s) 612, 994
Tsp45I GTSAC 1 cut(s) 922
TspDTI ATGAA 1 cut(s) 1181
TspGWI ACGGA 2 cut(s) 693, 843
Tth111I GACNNNGTC 1 cut(s) 710
VpaK11BI GGWCC 3 cut(s) 387, 532, 569
XceI RCATGY 2 cut(s) 361, 634
XmiI GTMKAC 1 cut(s) 675
XspI CTAG 2 cut(s) 32, 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.