Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011444

Physical Location & Seq

Genomic Coordinates Reverse (-)

117193 .. 118645

Gene Structure 1453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G000400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAGAATGACTTGACCGCTGTCTCTTTTAGCAAGAAAACAGACACTGTCATCAACGGCTTTCTCCCCAAGTACAAAAACCTAACTACATCCCAAAATGATTCGTTGTTGCTCTACCACGGCATCCCCGTGTACCAGTCCTTCCAGATGCTCAATTCCAACAACGGCCTCGTCAACAAACTGGCCACCGACAAGGCCAACAAGTTCGATTTCACCATCCAAAATGACGACGATGTCGTCAGCTTGGAGATAGAGGTCGTGACGGCGAAGATAACGAGGACGTTGATTGATGAGAAGCCTCTGGTGATTTACAAGGTGAACAAGGTCTTGCAGCTGACGGAGCTGTTCAAGGTGAAGACAGCACCTGTGCTGAAGGAGGTGGCAGAGGGGACGGATGATTTTACTGATGTGCAGGGATCAAATTATTCGGAGGATCAAACGACTAGTTCTCCAGGTCGAAAGGACGACAAATCAAATGGATATCCCTTGAAACCAATATTTTCATTTGAGATACCTTTTCTCCTGCCTGTGGATCGACTCACGAGGACAGGTACCGTTCGTACTTTCCAAGCCATAGATGCACGATTGAAAGAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0016020 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

200

Amino Acids

22.36

Weight (kDa)

5.91

Isoelectric Point (pI)

26.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12730
fragaria_vesca	FvH4_6g40590
malus_domestica	MD09G1127000.v1.1 MD17G1117400.v1.1
prunus_persica	Prupe.2G000400_v2.0.a1 Prupe.3G197200_v2.0.a1
pyrus_communis	pycom09g05130 pycom17g10800
rosa_chinensis	RchiOBHm_Chr2g0155911
rosa_laevigata	RLG00000020875
rosa_multiflora	Rmu_sc0002049.1_g000001 Rmu_sc0003417.1_g000026 Rmu_sc0008488.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093390
rosa_rugosa	Rorug02G0450800
rosa_samantha	Rh2AG517400 Rh2BG528600 Rh2CG502100 Rh2DG537700
rosa_wichuraiana	Rw2G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	233, 236
Acc65I	GGTACC	1 cut(s)	551
AccB1I	GGYRCC	1 cut(s)	551
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	3 cut(s)	424, 441, 540
AcoI	YGGCCR	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	4 cut(s)	74, 134, 553, 562
AfiI	CCNNNNNNNGG	1 cut(s)	529
AgsI	TTSAA	3 cut(s)	349, 490, 589
AhlI	ACTAGT	1 cut(s)	443
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	3 cut(s)	243, 334, 343
AluI	AGCT	3 cut(s)	243, 334, 343
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	3 cut(s)	424, 441, 540
AlwNI	CAGNNNCTG	2 cut(s)	47, 365
AoxI	GGCC	3 cut(s)	166, 183, 195
ApeKI	GCWGC	1 cut(s)	331
Asp718I	GGTACC	1 cut(s)	551
AsuHPI	GGTGA	4 cut(s)	205, 316, 328, 364
BalI	TGGCCA	1 cut(s)	185
BanI	GGYRCC	1 cut(s)	551
BarI	GAAGNNNNNNTAC	2 cut(s)	125, 157
BauI	CACGAG	1 cut(s)	541
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	4 cut(s)	73, 136, 181, 279
BciT130I	CCWGG	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	28
BcuI	ACTAGT	1 cut(s)	443
BfaI	CTAG	1 cut(s)	444
BisI	GCNGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	333
Bme1390I	CCNGG	1 cut(s)	453
BmiI	GGNNCC	1 cut(s)	553
BmrFI	CCNGG	1 cut(s)	453
BmsI	GCATC	3 cut(s)	132, 138, 568
BoxI	GACNNNNGTC	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	362
BpmI	CTGGAG	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	118
BsaXI	ACNNNNNCTCC	4 cut(s)	433, 463, 504, 534
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse1I	ACTGG	2 cut(s)	136, 186
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	4 cut(s)	89, 123, 216, 400
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseNI	ACTGG	2 cut(s)	136, 186
BseXI	GCAGC	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	431
BshFI	GGCC	3 cut(s)	168, 185, 197
BshNI	GGYRCC	1 cut(s)	551
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	3 cut(s)	168, 185, 197
Bsp143I	GATC	3 cut(s)	416, 433, 532
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	3 cut(s)	168, 185, 197
BspLI	GGNNCC	1 cut(s)	553
BspPI	GGATC	3 cut(s)	424, 441, 540
BspT107I	GGYRCC	1 cut(s)	551
BsrI	ACTGG	2 cut(s)	136, 186
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	3 cut(s)	416, 433, 532
BssSI	CACGAG	1 cut(s)	541
Bst2BI	CACGAG	1 cut(s)	541
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	2 cut(s)	49, 556
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	4 cut(s)	89, 123, 216, 400
BstKTI	GATC	3 cut(s)	419, 436, 535
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	3 cut(s)	416, 433, 532
BstMWI	GCNNNNNNNGC	2 cut(s)	340, 578
BstNI	CCWGG	1 cut(s)	453
BstPAI	GACNNNNGTC	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	451
BstV1I	GCAGC	1 cut(s)	343
BstV2I	GAAGAC	1 cut(s)	362
BsuRI	GGCC	3 cut(s)	168, 185, 197
BtgI	CCRYGG	1 cut(s)	118
BtsCI	GGATG	4 cut(s)	89, 123, 216, 400
BtsIMutI	CAGTG	1 cut(s)	45
CaiI	CAGNNNCTG	2 cut(s)	47, 365
Csp6I	GTAC	4 cut(s)	73, 133, 552, 561
CviJI	RGCY	9 cut(s)	60, 168, 185, 197, 243, 298, 334, 343, 572
CviKI_1	RGCY	9 cut(s)	60, 168, 185, 197, 243, 298, 334, 343, 572
CviQI	GTAC	4 cut(s)	73, 133, 552, 561
DpnI	GATC	3 cut(s)	418, 435, 534
DpnII	GATC	3 cut(s)	416, 433, 532
DrdI	GACNNNNNNGTC	2 cut(s)	233, 236
DseDI	GACNNNNNNGTC	2 cut(s)	233, 236
EaeI	YGGCCR	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	482
Eco57I	CTGAAG	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	451
EcoRV	GATATC	1 cut(s)	482
FaiI	YATR	1 cut(s)	575
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	1 cut(s)	403
Fnu4HI	GCNGC	1 cut(s)	332
FokI	GGATG	4 cut(s)	76, 110, 203, 407
Fsp4HI	GCNGC	1 cut(s)	332
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	1 cut(s)	332
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	3 cut(s)	168, 185, 197
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	2 cut(s)	101, 537
HphI	GGTGA	4 cut(s)	205, 316, 328, 364
Hpy166II	GTNNAC	3 cut(s)	133, 175, 319
Hpy188I	TCNGA	1 cut(s)	430
Hpy188III	TCNNGA	3 cut(s)	145, 259, 541
Hpy8I	GTNNAC	3 cut(s)	133, 175, 319
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	151, 367
HpyCH4III	ACNGT	2 cut(s)	49, 556
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	3 cut(s)	331, 412, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	340, 578
HpySE526I	ACGT	1 cut(s)	281
KpnI	GGTACC	1 cut(s)	555
Kzo9I	GATC	3 cut(s)	416, 433, 532
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	3 cut(s)	132, 138, 568
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	3 cut(s)	418, 435, 534
MboI	GATC	3 cut(s)	416, 433, 532
MboII	GAAGA	3 cut(s)	16, 280, 367
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	2 cut(s)	154, 421
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	531
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	8 cut(s)	179, 247, 270, 309, 370, 379, 424, 537
Mox20I	TGGCCA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	128
Msp20I	TGGCCA	1 cut(s)	185
MspA1I	CMGCKG	2 cut(s)	20, 334
MspR9I	CCNGG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	453
MwoI	GCNNNNNNNGC	2 cut(s)	340, 578
NdeII	GATC	3 cut(s)	416, 433, 532
NlaIV	GGNNCC	1 cut(s)	553
NmuCI	GTSAC	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 234
PfeI	GAWTC	1 cut(s)	101
PflFI	GACNNNGTC	2 cut(s)	47, 233
PkrI	GCNGC	1 cut(s)	333
PleI	GAGTC	1 cut(s)	531
PpsI	GAGTC	1 cut(s)	531
PshAI	GACNNNNGTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	1 cut(s)	553
PstNI	CAGNNNCTG	2 cut(s)	47, 365
PsyI	GACNNNGTC	2 cut(s)	47, 233
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	4 cut(s)	74, 134, 553, 562
RsaNI	GTAC	4 cut(s)	73, 133, 552, 561
RseI	CAYNNNNRTG	1 cut(s)	128
SatI	GCNGC	1 cut(s)	332
Sau3AI	GATC	3 cut(s)	416, 433, 532
SchI	GAGTC	1 cut(s)	531
ScrFI	CCNGG	1 cut(s)	453
SfaNI	GCATC	3 cut(s)	132, 138, 568
SmiMI	CAYNNNNRTG	1 cut(s)	128
SpeI	ACTAGT	1 cut(s)	443
Sse9I	AATT	2 cut(s)	154, 421
SsiI	CCGC	1 cut(s)	18
SspI	AATATT	1 cut(s)	498
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	451
TaaI	ACNGT	2 cut(s)	49, 556
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	3 cut(s)	207, 457, 535
TasI	AATT	2 cut(s)	154, 421
TatI	WGTACW	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	101
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	17, 492
TspGWI	ACGGA	2 cut(s)	353, 407
TspRI	CASTG	1 cut(s)	52
Tth111I	GACNNNGTC	2 cut(s)	47, 233
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.