Rroxscaffold_2G00093390

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
14760164 .. 14762266
2103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093390.1

Sequence Viewer

Length: 1221 bp
ATGTCACCACCACGGCCCCTCACCTCCACCCTAGCTCTCTCCCTCTCCGCTTTCCTCCTCCTCCTCCTCTCCTCCACCTCCCAAGCACACAACATCACCCGCATTCTGGCCAAGCACCCTGAGCTCTCCACTTTCAACCACTACCTCACCGTCACCCACCTCGCCGCCGAGATTAACCGCCGCCAGACCATCACCGTCCTTGCCATCGACAATGCCGCCATGTCCGCCATCCTCGCCAAGCACCTATCCATTCCAACCCTCAAGAATGTGCTCTCCCTCCACGTCCTCGTGGATTACTTCGGTGCCAAGAAGCTCCACCAGCTCACCGGCGGCTCCACCTTGACCGCCAGCATGTTCCAGTCCACCGGCACGGCAGACGGGACCACCGGGTACGTAAACATCACCAACCTCAAGGGTGGTAAAGTTGGGTTCGGTACTGAAGATAACAATGGGAAGCTCAACTCCTTCTACCAGAAGTCTGTGCAGGAGATCCCATACAATATCTCTGTGCTGCAAATCAGTCAGGTCCTAACTTCAGCTGAAGCAGAGGCGCCAACTGCCGGTCCAAGCGACGTGAACCTAACCTCCATCCTAGCCAAGCAAGGCTGCAAAGCCTTCTCCGACATGCTGATAGCAACCGGTGCTGTCGCCACTTTCCAGACAAACGTCGATGGAGGCCTGACCGTCTTCTGCCCCACCGACGCCGTCATCTCCGCCTTCGCCCCCAAGTACAAAAACCTAACGACACCGCAAAAGCTGGCGTTGGTTTTGTACCACGGCATCCCCGTGTACCAGTCCCTCCAGATGTTGAAGTCCAACAACGGAGTCATCAACACTCTGGCCACAGACAAGGCCAACAAGTATGACTTCACGGTGCAAAACGACGGCGAGGAGGTGAGCTTGGAGACCAAGGTCGTGACGGCGAAGATCACCGGAACCGTGCTGGATCAGGATCCTTTAGTGATCTACAAGGTGAACAATGTATTGCAGCCAAAGGAGCTGTTTAAGGTGGTGAAGACTAAGGCGGCTCCAGCTCCCAAGGAGGCCGCCGCGCCTTCGGATGACAATGCTGACGCGCCGTCAGAGGACGATGCTGACGCGCCGTCGGAGGATGATTCGGCGGATGCCAAGGCGGATGATAATGGAGTGAGTGGATTGATGAAGGGCGGGAGATTGGTTGTGGTTGGTTTGAGTTTGTGCGTTGGGGTTTTGCTTATGTGA

Protein Analysis

406

Amino Acids

42.96

Weight (kDa)

5.91

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 41 - 133 3.2e-06 Fasciclin domain
Fasciclin PF02469 202 - 331 3.7e-14 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 302, 550
AccII CGCG 3 cut(s) 1052, 1076, 1100
AclWI GGATC 4 cut(s) 484, 947, 954, 960
AcoI YGGCCR 2 cut(s) 108, 840
AcuI CTGAAG 3 cut(s) 459, 519, 561
AcyI GRCGYC 2 cut(s) 551, 702
AfaI GTAC 5 cut(s) 392, 436, 731, 773, 791
AfiI CCNNNNNNNGG 2 cut(s) 106, 560
AgeI ACCGGT 1 cut(s) 638
AgsI TTSAA 2 cut(s) 136, 811
AhdI GACNNNNNGTC 2 cut(s) 1078, 1102
AjiI CACGTC 2 cut(s) 283, 574
AloI GAACNNNNNNTCC 2 cut(s) 569, 601
Alw21I GWGCWC 2 cut(s) 126, 273
Alw26I GTCTC 1 cut(s) 899
AlwI GGATC 4 cut(s) 484, 947, 954, 960
AoxI GGCC 6 cut(s) 14, 108, 676, 840, 852, 1044
ApeKI GCWGC 3 cut(s) 511, 606, 988
AsiGI ACCGGT 1 cut(s) 638
AspLEI GCGC 4 cut(s) 553, 1054, 1078, 1102
AspS9I GGNCC 4 cut(s) 15, 381, 526, 563
AsuC2I CCSGG 1 cut(s) 388
AvaII GGWCC 3 cut(s) 381, 526, 563
BalI TGGCCA 2 cut(s) 110, 842
BamHI GGATCC 1 cut(s) 952
BanI GGYRCC 2 cut(s) 302, 550
BanII GRGCYC 1 cut(s) 126
BauI CACGAG 1 cut(s) 287
BbsI GAAGAC 2 cut(s) 679, 1022
Bbv12I GWGCWC 2 cut(s) 126, 273
BbvI GCAGC 3 cut(s) 498, 593, 1000
BccI CCATC 5 cut(s) 197, 212, 236, 596, 665
BceAI ACGGC 8 cut(s) 29, 387, 689, 793, 901, 936, 1063, 1087
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 899
BfaI CTAG 2 cut(s) 32, 593
BfoI RGCGCY 1 cut(s) 554
Bme1390I CCNGG 1 cut(s) 388
Bme18I GGWCC 3 cut(s) 381, 526, 563
BmeRI GACNNNNNGTC 2 cut(s) 1078, 1102
BmgBI CACGTC 2 cut(s) 283, 574
BmgT120I GGNCC 4 cut(s) 15, 381, 526, 563
BmiI GGNNCC 8 cut(s) 17, 304, 334, 382, 552, 937, 954, 1029
BmrFI CCNGG 1 cut(s) 388
BmsI GCATC 3 cut(s) 789, 1081, 1114
BoxI GACNNNNGTC 2 cut(s) 665, 911
BpiI GAAGAC 2 cut(s) 679, 1022
BpmI CTGGAG 2 cut(s) 785, 1014
Bpu10I CCTNAGC 1 cut(s) 120
BpuEI CTTGAG 2 cut(s) 245, 395
BpuMI CCSGG 1 cut(s) 388
BsaAI YACGTR 1 cut(s) 394
BsaBI GATNNNNATC 1 cut(s) 951
BsaHI GRCGYC 2 cut(s) 551, 702
BsaI GGTCTC 1 cut(s) 899
BsaJI CCNNGG 5 cut(s) 11, 775, 909, 1038, 1128
BsaWI WCCGGW 2 cut(s) 638, 932
BsaXI ACNNNNNCTCC 2 cut(s) 569, 599
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 560
Bse118I RCCGGY 4 cut(s) 326, 365, 560, 638
Bse1I ACTGG 2 cut(s) 358, 793
Bse8I GATNNNNATC 1 cut(s) 951
BseDI CCNNGG 5 cut(s) 11, 775, 909, 1038, 1128
BseGI GGATG 7 cut(s) 228, 588, 780, 1066, 1117, 1129, 1141
BseJI GATNNNNATC 1 cut(s) 951
BseLI CCNNNNNNNGG 2 cut(s) 106, 560
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 358, 793
BseRI GAGGAG 6 cut(s) 47, 50, 53, 56, 61, 905
BseXI GCAGC 3 cut(s) 498, 593, 1000
BsgI GTGCAG 1 cut(s) 503
Bsh1236I CGCG 3 cut(s) 1052, 1076, 1100
BshFI GGCC 6 cut(s) 16, 110, 678, 842, 854, 1046
BshNI GGYRCC 2 cut(s) 302, 550
BshTI ACCGGT 1 cut(s) 638
BsiHKAI GWGCWC 2 cut(s) 126, 273
BsiSI CCGG 6 cut(s) 327, 366, 387, 561, 639, 933
BslFI GGGAC 2 cut(s) 394, 781
BslI CCNNNNNNNGG 2 cut(s) 106, 560
BsmAI GTCTC 1 cut(s) 899
BsmFI GGGAC 2 cut(s) 394, 781
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 6 cut(s) 16, 110, 678, 842, 854, 1046
Bso31I GGTCTC 1 cut(s) 899
Bsp1286I GDGCHC 2 cut(s) 126, 273
Bsp143I GATC 5 cut(s) 489, 927, 946, 952, 963
BspANI GGCC 6 cut(s) 16, 110, 678, 842, 854, 1046
BspCNI CTCAG 1 cut(s) 112
BspFNI CGCG 3 cut(s) 1052, 1076, 1100
BspLI GGNNCC 8 cut(s) 17, 304, 334, 382, 552, 937, 954, 1029
BspPI GGATC 4 cut(s) 484, 947, 954, 960
BspT107I GGYRCC 2 cut(s) 302, 550
BspTNI GGTCTC 1 cut(s) 899
BsrFI RCCGGY 4 cut(s) 326, 365, 560, 638
BsrI ACTGG 2 cut(s) 358, 793
BssAI RCCGGY 4 cut(s) 326, 365, 560, 638
BssECI CCNNGG 5 cut(s) 11, 775, 909, 1038, 1128
BssMI GATC 5 cut(s) 489, 927, 946, 952, 963
BssNI GRCGYC 2 cut(s) 551, 702
BssSI CACGAG 1 cut(s) 287
BssT1I CCWWGG 3 cut(s) 909, 1038, 1128
Bst2BI CACGAG 1 cut(s) 287
Bst4CI ACNGT 5 cut(s) 151, 196, 685, 874, 940
BstACI GRCGYC 2 cut(s) 551, 702
BstAPI GCANNNNNTGC 1 cut(s) 641
BstBAI YACGTR 1 cut(s) 394
BstC8I GCNNGC 2 cut(s) 349, 759
BstDEI CTNAG 2 cut(s) 120, 1020
BstDSI CCRYGG 2 cut(s) 11, 775
BstF5I GGATG 7 cut(s) 228, 588, 780, 1066, 1117, 1129, 1141
BstFNI CGCG 3 cut(s) 1052, 1076, 1100
BstH2I RGCGCY 1 cut(s) 554
BstHHI GCGC 4 cut(s) 553, 1054, 1078, 1102
BstKTI GATC 5 cut(s) 492, 930, 949, 955, 966
BstMAI GTCTC 1 cut(s) 899
BstMBI GATC 5 cut(s) 489, 927, 946, 952, 963
BstMWI GCNNNNNNNGC 8 cut(s) 121, 224, 233, 319, 557, 641, 997, 1031
BstNSI RCATGY 2 cut(s) 355, 628
BstPAI GACNNNNGTC 2 cut(s) 665, 911
BstSCI CCNGG 1 cut(s) 386
BstSNI TACGTA 1 cut(s) 394
BstUI CGCG 3 cut(s) 1052, 1076, 1100
BstV1I GCAGC 3 cut(s) 498, 593, 1000
BstV2I GAAGAC 2 cut(s) 679, 1022
BstX2I RGATCY 2 cut(s) 489, 952
BstYI RGATCY 2 cut(s) 489, 952
BsuRI GGCC 6 cut(s) 16, 110, 678, 842, 854, 1046
BtgI CCRYGG 2 cut(s) 11, 775
BtrI CACGTC 2 cut(s) 283, 574
BtsCI GGATG 7 cut(s) 228, 588, 780, 1066, 1117, 1129, 1141
Cac8I GCNNGC 2 cut(s) 349, 759
CfoI GCGC 4 cut(s) 553, 1054, 1078, 1102
Cfr10I RCCGGY 4 cut(s) 326, 365, 560, 638
Cfr13I GGNCC 4 cut(s) 15, 381, 526, 563
CseI GACGC 3 cut(s) 710, 1082, 1106
Csp6I GTAC 5 cut(s) 391, 435, 730, 772, 790
CspAI ACCGGT 1 cut(s) 638
CviAII CATG 3 cut(s) 220, 352, 625
CviQI GTAC 5 cut(s) 391, 435, 730, 772, 790
DdeI CTNAG 2 cut(s) 120, 1020
DinI GGCGCC 1 cut(s) 552
DpnI GATC 5 cut(s) 491, 929, 948, 954, 965
DpnII GATC 5 cut(s) 489, 927, 946, 952, 963
DriI GACNNNNNGTC 2 cut(s) 1078, 1102
EaeI YGGCCR 2 cut(s) 108, 840
Eam1105I GACNNNNNGTC 2 cut(s) 1078, 1102
EciI GGCGGA 4 cut(s) 214, 703, 1136, 1148
Ecl136II GAGCTC 1 cut(s) 124
Eco105I TACGTA 1 cut(s) 394
Eco130I CCWWGG 3 cut(s) 909, 1038, 1128
Eco147I AGGCCT 1 cut(s) 678
Eco24I GRGCYC 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 899
Eco47I GGWCC 3 cut(s) 381, 526, 563
Eco53kI GAGCTC 1 cut(s) 124
Eco57I CTGAAG 3 cut(s) 459, 519, 561
EcoICRI GAGCTC 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 526
EcoT14I CCWWGG 3 cut(s) 909, 1038, 1128
EcoT38I GRGCYC 1 cut(s) 126
EgeI GGCGCC 1 cut(s) 552
EheI GGCGCC 1 cut(s) 552
ErhI CCWWGG 3 cut(s) 909, 1038, 1128
FaeI CATG 3 cut(s) 223, 355, 628
FaiI YATR 6 cut(s) 221, 353, 496, 626, 864, 1217
FalI AAGNNNNNCTT 2 cut(s) 851, 883
FaqI GGGAC 2 cut(s) 394, 781
FatI CATG 3 cut(s) 219, 351, 624
FauI CCCGC 2 cut(s) 107, 1160
FokI GGATG 7 cut(s) 215, 575, 767, 1073, 1124, 1136, 1148
FriOI GRGCYC 1 cut(s) 126
FspBI CTAG 2 cut(s) 32, 593
GlaI GCGC 4 cut(s) 552, 1053, 1077, 1101
GsuI CTGGAG 2 cut(s) 785, 1014
HaeII RGCGCY 1 cut(s) 554
HaeIII GGCC 6 cut(s) 16, 110, 678, 842, 854, 1046
HapII CCGG 6 cut(s) 327, 366, 387, 561, 639, 933
HgaI GACGC 3 cut(s) 710, 1082, 1106
HhaI GCGC 4 cut(s) 553, 1054, 1078, 1102
Hin1I GRCGYC 2 cut(s) 551, 702
Hin1II CATG 3 cut(s) 223, 355, 628
Hin6I GCGC 4 cut(s) 551, 1052, 1076, 1100
HinP1I GCGC 4 cut(s) 551, 1052, 1076, 1100
HinfI GANTC 2 cut(s) 825, 1115
HpaII CCGG 6 cut(s) 327, 366, 387, 561, 639, 933
Hpy166II GTNNAC 5 cut(s) 363, 397, 577, 790, 976
Hpy188I TCNGA 4 cut(s) 622, 1060, 1084, 1108
Hpy188III TCNNGA 5 cut(s) 262, 658, 802, 916, 950
Hpy8I GTNNAC 5 cut(s) 363, 397, 577, 790, 976
Hpy99I CGWCG 5 cut(s) 575, 671, 704, 887, 1108
HpyAV CCTTC 5 cut(s) 475, 625, 727, 1065, 1156
HpyCH4III ACNGT 5 cut(s) 151, 196, 685, 874, 940
HpyCH4IV ACGT 4 cut(s) 282, 393, 573, 666
HpyCH4V TGCA 5 cut(s) 484, 514, 609, 877, 988
HpyF10VI GCNNNNNNNGC 8 cut(s) 121, 224, 233, 319, 557, 641, 997, 1031
HpyF3I CTNAG 2 cut(s) 120, 1020
HpySE526I ACGT 4 cut(s) 282, 393, 573, 666
Hsp92I GRCGYC 2 cut(s) 551, 702
Hsp92II CATG 3 cut(s) 223, 355, 628
HspAI GCGC 4 cut(s) 551, 1052, 1076, 1100
KasI GGCGCC 1 cut(s) 550
Kzo9I GATC 5 cut(s) 489, 927, 946, 952, 963
LmnI GCTCC 5 cut(s) 318, 338, 997, 1033, 1039
Lsp1109I GCAGC 3 cut(s) 498, 593, 1000
LweI GCATC 3 cut(s) 789, 1081, 1114
MaeI CTAG 2 cut(s) 32, 593
MaeII ACGT 4 cut(s) 282, 393, 573, 666
MaeIII GTNAC 3 cut(s) 3, 151, 916
MalI GATC 5 cut(s) 491, 929, 948, 954, 965
MboI GATC 5 cut(s) 489, 927, 946, 952, 963
MboII GAAGA 4 cut(s) 452, 679, 937, 1027
MflI RGATCY 2 cut(s) 489, 952
MhlI GDGCHC 2 cut(s) 126, 273
MlsI TGGCCA 2 cut(s) 110, 842
MluNI TGGCCA 2 cut(s) 110, 842
Mly113I GGCGCC 1 cut(s) 551
MlyI GAGTC 1 cut(s) 834
MmeI TCCRAC 4 cut(s) 278, 645, 840, 1086
Mox20I TGGCCA 2 cut(s) 110, 842
MscI TGGCCA 2 cut(s) 110, 842
MseI TTAA 2 cut(s) 174, 1005
MslI CAYNNNNRTG 1 cut(s) 785
Msp20I TGGCCA 2 cut(s) 110, 842
MspA1I CMGCKG 1 cut(s) 539
MspI CCGG 6 cut(s) 327, 366, 387, 561, 639, 933
MspR9I CCNGG 1 cut(s) 388
Mva1269I GAATGC 1 cut(s) 102
MvnI CGCG 3 cut(s) 1052, 1076, 1100
MwoI GCNNNNNNNGC 8 cut(s) 121, 224, 233, 319, 557, 641, 997, 1031
NarI GGCGCC 1 cut(s) 551
NciI CCSGG 1 cut(s) 388
NdeII GATC 5 cut(s) 489, 927, 946, 952, 963
NlaIII CATG 3 cut(s) 223, 355, 628
NlaIV GGNNCC 8 cut(s) 17, 304, 334, 382, 552, 937, 954, 1029
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 3 cut(s) 3, 151, 916
NspI RCATGY 2 cut(s) 355, 628
PceI AGGCCT 1 cut(s) 678
PcsI WCGNNNNNNNCGW 1 cut(s) 783
PctI GAATGC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 1115
PflFI GACNNNGTC 1 cut(s) 704
PinAI ACCGGT 1 cut(s) 638
PleI GAGTC 1 cut(s) 833
PluTI GGCGCC 1 cut(s) 554
PpsI GAGTC 1 cut(s) 833
Ppu21I YACGTR 1 cut(s) 394
PpuMI RGGWCCY 1 cut(s) 526
PshAI GACNNNNGTC 2 cut(s) 665, 911
Psp124BI GAGCTC 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 526
PspN4I GGNNCC 8 cut(s) 17, 304, 334, 382, 552, 937, 954, 1029
PspPI GGNCC 4 cut(s) 15, 381, 526, 563
PspPPI RGGWCCY 1 cut(s) 526
PsuI RGATCY 2 cut(s) 489, 952
PsyI GACNNNGTC 1 cut(s) 704
PvuII CAGCTG 1 cut(s) 539
RsaI GTAC 5 cut(s) 392, 436, 731, 773, 791
RsaNI GTAC 5 cut(s) 391, 435, 730, 772, 790
RseI CAYNNNNRTG 1 cut(s) 785
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 2 cut(s) 174, 1005
Sau3AI GATC 5 cut(s) 489, 927, 946, 952, 963
Sau96I GGNCC 4 cut(s) 15, 381, 526, 563
SchI GAGTC 1 cut(s) 834
ScrFI CCNGG 1 cut(s) 388
SduI GDGCHC 2 cut(s) 126, 273
SfaNI GCATC 3 cut(s) 789, 1081, 1114
SfoI GGCGCC 1 cut(s) 552
SgrAI CRCCGGYG 1 cut(s) 326
SinI GGWCC 3 cut(s) 381, 526, 563
SmiMI CAYNNNNRTG 1 cut(s) 785
SmlI CTYRAG 2 cut(s) 260, 410
SmoI CTYRAG 2 cut(s) 260, 410
SnaBI TACGTA 1 cut(s) 394
SseBI AGGCCT 1 cut(s) 678
SspDI GGCGCC 1 cut(s) 550
SspMI CTAG 2 cut(s) 32, 593
SstI GAGCTC 1 cut(s) 126
StuI AGGCCT 1 cut(s) 678
StyD4I CCNGG 1 cut(s) 386
StyI CCWWGG 3 cut(s) 909, 1038, 1128
TaaI ACNGT 5 cut(s) 151, 196, 685, 874, 940
TaiI ACGT 4 cut(s) 285, 396, 576, 669
TaqI TCGA 2 cut(s) 207, 669
TatI WGTACW 1 cut(s) 729
TauI GCSGC 7 cut(s) 167, 183, 218, 333, 1028, 1049, 1052
TfiI GAWTC 1 cut(s) 1115
Tru1I TTAA 2 cut(s) 174, 1005
Tru9I TTAA 2 cut(s) 174, 1005
TseFI GTSAC 3 cut(s) 3, 151, 916
TseI GCWGC 3 cut(s) 511, 606, 988
Tsp45I GTSAC 3 cut(s) 3, 151, 916
TspDTI ATGAA 1 cut(s) 1175
TspGWI ACGGA 1 cut(s) 837
Tth111I GACNNNGTC 1 cut(s) 704
VpaK11BI GGWCC 3 cut(s) 381, 526, 563
XceI RCATGY 2 cut(s) 355, 628
XspI CTAG 2 cut(s) 32, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.