Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006079

Physical Location & Seq

Genomic Coordinates Reverse (-)

7753260 .. 7756030

Gene Structure 2771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGAACTCAATTCAACGTTTCTCGTTGACAACACAGCGTGGAAAAAGACTAAGCGTCGTCAAGTCATGTGTACGACATTTCTGCGGAAGAGACGTCGTAATAAAAGACGAAGGAGACTGGTTTTACTCGCCGGAATGGTGGGATCCTCAAGACGGTGGTTACACAGTCTCACGAGCTGTCTCCAATAAAGGAAACGGCGTCGTTTCTGTCGTCGCCCACCCTTCTTCTCTCCCTAGTAGAGATTCATGGGGAGAAACTGAGAAATGGTTAGAGAAAAGGTATATGGAGATTATTCCAAGAGATACAGAGGAGAAGAATGGGAGGTTTAATGTACTTGGATATCAATGGCGATCGCTTCGGTTTAACGATGATACTAGACAAAGCACTGTGAAAGTTATGGCTGCTTGTAGAACATTGCAACCAAGTTCTGTTTTTTATATGCAACAGCCTCATTGTCTTGCTGTTCCATATCTGAAGAGTATGGTTTCAGTTGGATTGACTTCTCTTGCAGCTTCTAAATTTGATATGAGGAGTGTAGCTATTGGGGACAAACAAATGCGTGTGTTATGTATCGGTCACGGTGGAGGAAGTTTACCGTTGTTTATAGCTAAACACATTCTTGGTGCTGTTGTTGACATAGTTGAGCTAGACCCACTTGTTATCTCAGAGTCGGTTCGAGCAATGGGCTTTCCTGCATTCTCTGTGATGACAGCAACTGGGAAACGTGTGTTACCAACTCCTGAAATTATTGACCAAGTGATGTGGGGAGGGATCCATGAGAGACTCTCCTTATACGAATCAAAAGCTGAGGATTTCATTCTCAGGAACCAAAGTAATACTTATGACTTGATCTTCATGGATGCTTATGATGGAGCAGACATCTTTCCCCATAGTCTGTGGGATTCCAGTTCTGTGTTTATGAAAGCTCTGAGCAAAACACTTCACCATGAGCATGGAACTCTGGTGGTGAACCTTCACTCTGATGCAGACATCTCTGATATAGACAGATCAAATGAAGGTGTAACAACGGGGAAGTATGTACGGAAAGTTGGTAAAGCCTATAAAAAGGGTTTATTAGAGAATGAGAGGAATGGTCTGGTGTTTGCTTGTGAAGTGCCATGGCTATGTAATGTATCGCTGGTGGTGAGCAGAGGGATGGGGTCAGAGGGAAGAGATAGAGAGAAAACCAAGAGTAATCTAATGAAGACTTCACTAGAAGTGGACCGAGTCCTGCGTCTGCCTTTCTCTTGCTTGGATTATCTGAAAACTGGTCTTGCCATCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

428

Amino Acids

48.0

Weight (kDa)

8.5

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13330 AT4G13330 AT4G13330 AT4G13330 AT4G13330 AT4G13330
fragaria_vesca	FvH4_4g04570
malus_domestica	MD07G1289900.v1.1 MD16G1226200.v1.1
prunus_persica	Prupe.1G048100_v2.0.a1
pyrus_communis	pycom07g26260 pycom13g19560 pycom13g19570 pycom16g18920
rosa_chinensis	RchiOBHm_Chr4g0395361
rosa_laevigata	RLG00000009628
rosa_multiflora	Rmu_sc0002791.1_g000012 Rmu_sc0010817.1_g000020
rosa_roxburghii	Rroxscaffold_5G00340310
rosa_rugosa	Rorug03G0358000
rosa_samantha	Rh4AG059400 Rh4BG057700 Rh4CG063200 Rh4DG054300
rosa_wichuraiana	Rw0G003260 Rw0G007700 Rw4G004720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	96
AciI	CCGC	1 cut(s)	84
AclI	AACGTT	1 cut(s)	16
AclWI	GGATC	4 cut(s)	137, 150, 766, 779
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	494
AcyI	GRCGYC	2 cut(s)	93, 198
AdeI	CACNNNGTG	1 cut(s)	38
AfaI	GTAC	3 cut(s)	72, 333, 1041
AfiI	CCNNNNNNNGG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	724
AgsI	TTSAA	1 cut(s)	14
AhdI	GACNNNNNGTC	1 cut(s)	53
AluBI	AGCT	7 cut(s)	176, 512, 539, 608, 646, 806, 926
AluI	AGCT	7 cut(s)	176, 512, 539, 608, 646, 806, 926
Alw26I	GTCTC	5 cut(s)	84, 108, 172, 184, 775
AlwI	GGATC	4 cut(s)	137, 150, 766, 779
AlwNI	CAGNNNCTG	1 cut(s)	716
ApeKI	GCWGC	2 cut(s)	401, 509
ApoI	RAATTY	1 cut(s)	518
AsiSI	GCGATCGC	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	1222
AsuHPI	GGTGA	3 cut(s)	935, 979, 1156
AvaII	GGWCC	1 cut(s)	1222
BamHI	GGATCC	2 cut(s)	142, 771
BauI	CACGAG	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	1211
BbvCI	CCTCAGC	1 cut(s)	807
BbvI	GCAGC	2 cut(s)	388, 521
BccI	CCATC	3 cut(s)	863, 1150, 1286
BceAI	ACGGC	1 cut(s)	211
BcgI	CGANNNNNNTGC	2 cut(s)	63, 97
BcoDI	GTCTC	5 cut(s)	84, 108, 172, 184, 775
BfaI	CTAG	4 cut(s)	234, 375, 647, 1214
BisI	GCNGC	2 cut(s)	402, 510
BlsI	GCNGC	2 cut(s)	403, 511
Bme18I	GGWCC	1 cut(s)	1222
BmeRI	GACNNNNNGTC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	1222
BmiI	GGNNCC	3 cut(s)	144, 773, 827
BmrI	ACTGGG	1 cut(s)	726
BmsI	GCATC	2 cut(s)	850, 973
BmuI	ACTGGG	1 cut(s)	726
BpiI	GAAGAC	1 cut(s)	1211
BplI	GAGNNNNNCTC	2 cut(s)	770, 802
Bpu10I	CCTNAGC	1 cut(s)	807
BpuEI	CTTGAG	1 cut(s)	132
BsaHI	GRCGYC	2 cut(s)	93, 198
BsaJI	CCNNGG	1 cut(s)	1118
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse1I	ACTGG	4 cut(s)	122, 721, 906, 1273
Bse3DI	GCAATG	2 cut(s)	413, 687
BseDI	CCNNGG	1 cut(s)	1118
BseGI	GGATG	2 cut(s)	865, 1161
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMI	GCAATG	2 cut(s)	413, 687
BseMII	CTCAG	5 cut(s)	249, 678, 798, 835, 920
BseNI	ACTGG	4 cut(s)	122, 721, 906, 1273
BseRI	GAGGAG	2 cut(s)	323, 544
BseXI	GCAGC	2 cut(s)	388, 521
Bsh1285I	CGRYCG	1 cut(s)	353
BsiEI	CGRYCG	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	5 cut(s)	84, 108, 172, 184, 775
BsmBI	CGTCTC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	560
BsmI	GAATGC	1 cut(s)	695
Bsp143I	GATC	5 cut(s)	142, 350, 771, 849, 1007
Bsp19I	CCATGG	1 cut(s)	1118
BspACI	CCGC	1 cut(s)	84
BspCNI	CTCAG	5 cut(s)	250, 677, 799, 834, 921
BspLI	GGNNCC	3 cut(s)	144, 773, 827
BspPI	GGATC	4 cut(s)	137, 150, 766, 779
BsrDI	GCAATG	2 cut(s)	413, 687
BsrI	ACTGG	4 cut(s)	122, 721, 906, 1273
BssECI	CCNNGG	1 cut(s)	1118
BssMI	GATC	5 cut(s)	142, 350, 771, 849, 1007
BssNI	GRCGYC	2 cut(s)	93, 198
BssSI	CACGAG	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	1118
Bst2BI	CACGAG	1 cut(s)	171
Bst4CI	ACNGT	5 cut(s)	155, 166, 388, 581, 597
Bst6I	CTCTTC	3 cut(s)	82, 470, 1165
BstACI	GRCGYC	2 cut(s)	93, 198
BstDEI	CTNAG	6 cut(s)	50, 258, 664, 807, 821, 929
BstDSI	CCRYGG	1 cut(s)	1118
BstF5I	GGATG	2 cut(s)	865, 1161
BstKTI	GATC	5 cut(s)	145, 353, 774, 852, 1010
BstMAI	GTCTC	5 cut(s)	84, 108, 172, 184, 775
BstMBI	GATC	5 cut(s)	142, 350, 771, 849, 1007
BstMCI	CGRYCG	1 cut(s)	353
BstV1I	GCAGC	2 cut(s)	388, 521
BstV2I	GAAGAC	1 cut(s)	1211
BstX2I	RGATCY	2 cut(s)	142, 771
BstXI	CCANNNNNNTGG	1 cut(s)	953
BstYI	RGATCY	2 cut(s)	142, 771
BtgI	CCRYGG	1 cut(s)	1118
BtsCI	GGATG	2 cut(s)	865, 1161
BtsIMutI	CAGTG	1 cut(s)	384
CaiI	CAGNNNCTG	1 cut(s)	716
Cfr13I	GGNCC	1 cut(s)	1222
CseI	GACGC	3 cut(s)	43, 187, 1223
Csp6I	GTAC	3 cut(s)	71, 332, 1040
CspCI	CAANNNNNGTGG	2 cut(s)	743, 778
CviAII	CATG	7 cut(s)	66, 246, 776, 856, 947, 953, 1119
CviQI	GTAC	3 cut(s)	71, 332, 1040
DdeI	CTNAG	6 cut(s)	50, 258, 664, 807, 821, 929
DpnI	GATC	5 cut(s)	144, 352, 773, 851, 1009
DpnII	GATC	5 cut(s)	142, 350, 771, 849, 1007
DraIII	CACNNNGTG	1 cut(s)	38
DriI	GACNNNNNGTC	1 cut(s)	53
Eam1104I	CTCTTC	3 cut(s)	82, 470, 1165
Eam1105I	GACNNNNNGTC	1 cut(s)	53
EarI	CTCTTC	3 cut(s)	82, 470, 1165
Eco130I	CCWWGG	1 cut(s)	1118
Eco32I	GATATC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	1222
Eco57I	CTGAAG	1 cut(s)	494
EcoRV	GATATC	1 cut(s)	341
EcoT14I	CCWWGG	1 cut(s)	1118
ErhI	CCWWGG	1 cut(s)	1118
Esp3I	CGTCTC	1 cut(s)	84
FaeI	CATG	7 cut(s)	69, 249, 779, 859, 950, 956, 1122
FalI	AAGNNNNNCTT	2 cut(s)	823, 855
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	7 cut(s)	65, 245, 775, 855, 946, 952, 1118
Fnu4HI	GCNGC	2 cut(s)	402, 510
FokI	GGATG	2 cut(s)	872, 1168
Fsp4HI	GCNGC	2 cut(s)	402, 510
FspBI	CTAG	4 cut(s)	234, 375, 647, 1214
GluI	GCNGC	2 cut(s)	402, 510
HapII	CCGG	1 cut(s)	131
HgaI	GACGC	3 cut(s)	43, 187, 1223
Hin1I	GRCGYC	2 cut(s)	93, 198
Hin1II	CATG	7 cut(s)	69, 249, 779, 859, 950, 956, 1122
HincII	GTYRAC	2 cut(s)	27, 634
HindII	GTYRAC	2 cut(s)	27, 634
HinfI	GANTC	6 cut(s)	242, 668, 783, 797, 902, 1227
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	3 cut(s)	935, 979, 1156
Hpy166II	GTNNAC	6 cut(s)	27, 71, 593, 634, 970, 1222
Hpy188I	TCNGA	7 cut(s)	474, 667, 930, 982, 997, 1165, 1263
Hpy188III	TCNNGA	4 cut(s)	149, 171, 740, 823
Hpy8I	GTNNAC	6 cut(s)	27, 71, 593, 634, 970, 1222
Hpy99I	CGWCG	4 cut(s)	59, 98, 203, 215
HpyAV	CCTTC	4 cut(s)	104, 231, 983, 1010
HpyCH4III	ACNGT	5 cut(s)	155, 166, 388, 581, 597
HpyCH4IV	ACGT	3 cut(s)	16, 93, 724
HpyCH4V	TGCA	5 cut(s)	418, 442, 509, 695, 986
HpyF3I	CTNAG	6 cut(s)	50, 258, 664, 807, 821, 929
HpySE526I	ACGT	3 cut(s)	16, 93, 724
Hsp92I	GRCGYC	2 cut(s)	93, 198
Hsp92II	CATG	7 cut(s)	69, 249, 779, 859, 950, 956, 1122
Kzo9I	GATC	5 cut(s)	142, 350, 771, 849, 1007
LmnI	GCTCC	1 cut(s)	872
Lsp1109I	GCAGC	2 cut(s)	388, 521
LweI	GCATC	2 cut(s)	850, 973
MaeI	CTAG	4 cut(s)	234, 375, 647, 1214
MaeII	ACGT	3 cut(s)	16, 93, 724
MaeIII	GTNAC	4 cut(s)	158, 575, 729, 1021
MalI	GATC	5 cut(s)	144, 352, 773, 851, 1009
MboI	GATC	5 cut(s)	142, 350, 771, 849, 1007
MboII	GAAGA	7 cut(s)	99, 216, 325, 487, 844, 1182, 1216
MflI	RGATCY	2 cut(s)	142, 771
MluCI	AATT	3 cut(s)	9, 518, 744
MlyI	GAGTC	3 cut(s)	677, 777, 1236
MmeI	TCCRAC	1 cut(s)	472
MseI	TTAA	2 cut(s)	327, 363
MslI	CAYNNNNRTG	3 cut(s)	951, 981, 1123
MspI	CCGG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	695
NcoI	CCATGG	1 cut(s)	1118
NdeII	GATC	5 cut(s)	142, 350, 771, 849, 1007
NlaIII	CATG	7 cut(s)	69, 249, 779, 859, 950, 956, 1122
NlaIV	GGNNCC	3 cut(s)	144, 773, 827
NmuCI	GTSAC	1 cut(s)	575
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	1 cut(s)	695
PfeI	GAWTC	3 cut(s)	242, 797, 902
PflFI	GACNNNGTC	1 cut(s)	1226
PkrI	GCNGC	2 cut(s)	403, 511
Ple19I	CGATCG	1 cut(s)	353
PleI	GAGTC	3 cut(s)	676, 777, 1235
PpsI	GAGTC	3 cut(s)	676, 777, 1235
Psp1406I	AACGTT	1 cut(s)	16
PspN4I	GGNNCC	3 cut(s)	144, 773, 827
PspPI	GGNCC	1 cut(s)	1222
PstNI	CAGNNNCTG	1 cut(s)	716
PsuI	RGATCY	2 cut(s)	142, 771
PsyI	GACNNNGTC	1 cut(s)	1226
PvuI	CGATCG	1 cut(s)	353
RgaI	GCGATCGC	1 cut(s)	353
RsaI	GTAC	3 cut(s)	72, 333, 1041
RsaNI	GTAC	3 cut(s)	71, 332, 1040
RseI	CAYNNNNRTG	3 cut(s)	951, 981, 1123
SaqAI	TTAA	2 cut(s)	327, 363
SatI	GCNGC	2 cut(s)	402, 510
Sau3AI	GATC	5 cut(s)	142, 350, 771, 849, 1007
Sau96I	GGNCC	1 cut(s)	1222
SchI	GAGTC	3 cut(s)	677, 777, 1236
SfaAI	GCGATCGC	1 cut(s)	353
SfaNI	GCATC	2 cut(s)	850, 973
SgfI	GCGATCGC	1 cut(s)	353
SinI	GGWCC	1 cut(s)	1222
SmiMI	CAYNNNNRTG	3 cut(s)	951, 981, 1123
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
Sse9I	AATT	3 cut(s)	9, 518, 744
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	4 cut(s)	234, 375, 647, 1214
StyI	CCWWGG	1 cut(s)	1118
TaaI	ACNGT	5 cut(s)	155, 166, 388, 581, 597
TaiI	ACGT	3 cut(s)	19, 96, 727
TaqI	TCGA	1 cut(s)	676
TaqII	GACCGA	2 cut(s)	563, 1239
TasI	AATT	3 cut(s)	9, 518, 744
TatI	WGTACW	1 cut(s)	331
TfiI	GAWTC	3 cut(s)	242, 797, 902
Tru1I	TTAA	2 cut(s)	327, 363
Tru9I	TTAA	2 cut(s)	327, 363
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	2 cut(s)	401, 509
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	7 cut(s)	17, 234, 805, 844, 935, 1029, 1217
TspGWI	ACGGA	1 cut(s)	1057
TspRI	CASTG	1 cut(s)	391
Tth111I	GACNNNGTC	1 cut(s)	1226
VpaK11BI	GGWCC	1 cut(s)	1222
XapI	RAATTY	1 cut(s)	518
XspI	CTAG	4 cut(s)	234, 375, 647, 1214
ZraI	GACGTC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.