Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006079

Physical Location & Seq

Genomic Coordinates Forward (+)

15534888 .. 15535378

Gene Structure 491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g19560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTGGCGCAGAGCTGGATTGAGCTCGGGACTCAACATCCGGAAGCTCTCAACCGCCGTACGACGTCGCATCGAGGACGAATGCCACACCGTCCTCCGCTCCACATCCGACAAAGGCAACGCTGTCGTCTCCGTCGTCACCTACCCTTCCTCAAAACCCAGCGTGCTTCACTGGGCGTCGACGGAGAGATGGCTGCAGCAAAGGTACGAAGAGATACACGAGTGCCGTCAGCACAACGAGAGATTCAGAATGCTAGGATATCAATGGCGCGCTCTCCGCTTCAACGACGACACCCGCCAGAGCACTGTCAAGGTTTTGGCTGCCTGCAGGCGATCGGAACTCGAGTCGATCGCCCTTATGCAGCAGCCCCATTGCTTGGCTGTTCCATGTAAGCAAAACCCATTTCCCCTTTTCAATTTTAATTCCCATTCAATTTCTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

17.16

Weight (kDa)

9.88

Isoelectric Point (pI)

81.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13330 AT4G13330 AT4G13330 AT4G13330 AT4G13330 AT4G13330
fragaria_vesca	FvH4_4g04570
malus_domestica	MD07G1289900.v1.1 MD16G1226200.v1.1
prunus_persica	Prupe.1G048100_v2.0.a1
pyrus_communis	pycom07g26260 pycom13g19560 pycom13g19570 pycom16g18920
rosa_chinensis	RchiOBHm_Chr4g0395361
rosa_laevigata	RLG00000009628
rosa_multiflora	Rmu_sc0002791.1_g000012 Rmu_sc0010817.1_g000020
rosa_roxburghii	Rroxscaffold_5G00340310
rosa_rugosa	Rorug03G0358000
rosa_samantha	Rh4AG059400 Rh4BG057700 Rh4CG063200 Rh4DG054300
rosa_wichuraiana	Rw0G003260 Rw0G007700 Rw4G004720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	67
AccB7I	CCANNNNNTGG	1 cut(s)	376
AccBSI	CCGCTC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	179
AccII	CGCG	1 cut(s)	270
AccIII	TCCGGA	1 cut(s)	39
AciI	CCGC	4 cut(s)	54, 97, 277, 295
AcyI	GRCGYC	2 cut(s)	64, 176
AfaI	GTAC	2 cut(s)	60, 206
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	3 cut(s)	283, 415, 432
AluBI	AGCT	3 cut(s)	14, 24, 46
AluI	AGCT	3 cut(s)	14, 24, 46
Alw21I	GWGCWC	2 cut(s)	26, 305
Alw26I	GTCTC	1 cut(s)	133
Ama87I	CYCGRG	2 cut(s)	25, 341
Aor13HI	TCCGGA	1 cut(s)	39
ApeKI	GCWGC	5 cut(s)	193, 196, 320, 361, 364
AspLEI	GCGC	3 cut(s)	9, 270, 272
AsuHPI	GGTGA	1 cut(s)	130
AvaI	CYCGRG	2 cut(s)	25, 341
BaeI	ACNNNNGTAYC	2 cut(s)	206, 239
BanII	GRGCYC	1 cut(s)	26
BauI	CACGAG	1 cut(s)	218
Bbv12I	GWGCWC	2 cut(s)	26, 305
BbvI	GCAGC	5 cut(s)	180, 208, 307, 373, 376
BccI	CCATC	1 cut(s)	183
BceAI	ACGGC	2 cut(s)	41, 210
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	2 cut(s)	194, 325
BisI	GCNGC	5 cut(s)	194, 197, 321, 362, 365
BlsI	GCNGC	5 cut(s)	195, 198, 322, 363, 366
BmeT110I	CYCGRG	2 cut(s)	25, 341
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	78
BmuI	ACTGGG	1 cut(s)	181
BsaHI	GRCGYC	2 cut(s)	64, 176
BsaWI	WCCGGW	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse1I	ACTGG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	370
BseAI	TCCGGA	1 cut(s)	39
BseGI	GGATG	2 cut(s)	36, 104
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMI	GCAATG	1 cut(s)	370
BseNI	ACTGG	1 cut(s)	176
BsePI	GCGCGC	1 cut(s)	268
BseXI	GCAGC	5 cut(s)	180, 208, 307, 373, 376
BseYI	CCCAGC	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	270
Bsh1285I	CGRYCG	2 cut(s)	335, 351
BsiEI	CGRYCG	2 cut(s)	335, 351
BsiHKAI	GWGCWC	2 cut(s)	26, 305
BsiHKCI	CYCGRG	2 cut(s)	25, 341
BsiSI	CCGG	1 cut(s)	40
BsiWI	CGTACG	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	133
BsmBI	CGTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	42
BsmI	GAATGC	2 cut(s)	86, 255
BsoBI	CYCGRG	2 cut(s)	25, 341
Bsp1286I	GDGCHC	2 cut(s)	26, 305
Bsp13I	TCCGGA	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	332, 348
BspACI	CCGC	4 cut(s)	54, 97, 277, 295
BspEI	TCCGGA	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	270
BspMAI	CTGCAG	2 cut(s)	198, 329
BsrBI	CCGCTC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	176
BssHII	GCGCGC	1 cut(s)	268
BssMI	GATC	2 cut(s)	332, 348
BssNI	GRCGYC	2 cut(s)	64, 176
BssSI	CACGAG	1 cut(s)	218
Bst2BI	CACGAG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	91, 307
Bst6I	CTCTTC	1 cut(s)	204
BstACI	GRCGYC	2 cut(s)	64, 176
BstC8I	GCNNGC	4 cut(s)	164, 270, 325, 329
BstF5I	GGATG	2 cut(s)	36, 104
BstFNI	CGCG	1 cut(s)	270
BstHHI	GCGC	3 cut(s)	9, 270, 272
BstKTI	GATC	2 cut(s)	335, 351
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	2 cut(s)	332, 348
BstMCI	CGRYCG	2 cut(s)	335, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstSFI	CTRYAG	2 cut(s)	194, 325
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	5 cut(s)	180, 208, 307, 373, 376
BtsCI	GGATG	2 cut(s)	36, 104
BtsIMutI	CAGTG	2 cut(s)	169, 303
Cac8I	GCNNGC	4 cut(s)	164, 270, 325, 329
CfoI	GCGC	3 cut(s)	9, 270, 272
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	2 cut(s)	59, 205
CviAII	CATG	1 cut(s)	387
CviJI	RGCY	7 cut(s)	14, 24, 46, 193, 320, 367, 380
CviKI_1	RGCY	7 cut(s)	14, 24, 46, 193, 320, 367, 380
CviQI	GTAC	2 cut(s)	59, 205
DpnI	GATC	2 cut(s)	334, 350
DpnII	GATC	2 cut(s)	332, 348
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Ecl136II	GAGCTC	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	26
Eco32I	GATATC	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	24
Eco88I	CYCGRG	2 cut(s)	25, 341
EcoICRI	GAGCTC	1 cut(s)	24
EcoRV	GATATC	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	26
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	1 cut(s)	390
FaiI	YATR	2 cut(s)	359, 388
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	1 cut(s)	386
FauI	CCCGC	1 cut(s)	302
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	5 cut(s)	194, 197, 321, 362, 365
FokI	GGATG	2 cut(s)	23, 91
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	5 cut(s)	194, 197, 321, 362, 365
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	3 cut(s)	8, 269, 271
GluI	GCNGC	5 cut(s)	194, 197, 321, 362, 365
GsaI	CCCAGC	1 cut(s)	162
HapII	CCGG	1 cut(s)	40
HgaI	GACGC	1 cut(s)	165
HhaI	GCGC	3 cut(s)	9, 270, 272
Hin1I	GRCGYC	2 cut(s)	64, 176
Hin1II	CATG	1 cut(s)	390
Hin6I	GCGC	3 cut(s)	7, 268, 270
HinP1I	GCGC	3 cut(s)	7, 268, 270
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	3 cut(s)	30, 243, 344
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	4 cut(s)	109, 248, 337, 443
Hpy188III	TCNNGA	2 cut(s)	27, 40
Hpy8I	GTNNAC	1 cut(s)	180
Hpy99I	CGWCG	6 cut(s)	66, 69, 137, 181, 184, 290
HpyAV	CCTTC	1 cut(s)	156
HpyCH4III	ACNGT	2 cut(s)	91, 307
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	3 cut(s)	196, 327, 361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	64
Hsp92I	GRCGYC	2 cut(s)	64, 176
Hsp92II	CATG	1 cut(s)	390
HspAI	GCGC	3 cut(s)	7, 268, 270
Kpn2I	TCCGGA	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	332, 348
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	6 cut(s)	53, 157, 172, 311, 313, 337
Lsp1109I	GCAGC	5 cut(s)	180, 208, 307, 373, 376
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	334, 350
MbiI	CCGCTC	1 cut(s)	99
MboI	GATC	2 cut(s)	332, 348
MboII	GAAGA	1 cut(s)	221
MhlI	GDGCHC	2 cut(s)	26, 305
MluCI	AATT	3 cut(s)	415, 421, 432
MlyI	GAGTC	2 cut(s)	24, 353
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	3 cut(s)	67, 104, 160
MroI	TCCGGA	1 cut(s)	39
MseI	TTAA	1 cut(s)	420
MspI	CCGG	1 cut(s)	40
Mva1269I	GAATGC	2 cut(s)	86, 255
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	276
NdeII	GATC	2 cut(s)	332, 348
NlaIII	CATG	1 cut(s)	390
NmuCI	GTSAC	1 cut(s)	136
PaeR7I	CTCGAG	1 cut(s)	341
PauI	GCGCGC	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	2 cut(s)	86, 255
PfeI	GAWTC	1 cut(s)	243
Pfl23II	CGTACG	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	376
PkrI	GCNGC	5 cut(s)	195, 198, 322, 363, 366
Ple19I	CGATCG	2 cut(s)	335, 351
PleI	GAGTC	2 cut(s)	24, 352
PpsI	GAGTC	2 cut(s)	24, 352
Psp124BI	GAGCTC	1 cut(s)	26
PspFI	CCCAGC	1 cut(s)	158
PspLI	CGTACG	1 cut(s)	58
PspXI	VCTCGAGB	1 cut(s)	341
PstI	CTGCAG	2 cut(s)	198, 329
PteI	GCGCGC	1 cut(s)	268
PvuI	CGATCG	2 cut(s)	335, 351
RsaI	GTAC	2 cut(s)	60, 206
RsaNI	GTAC	2 cut(s)	59, 205
SacI	GAGCTC	1 cut(s)	26
SalI	GTCGAC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	5 cut(s)	194, 197, 321, 362, 365
Sau3AI	GATC	2 cut(s)	332, 348
SbfI	CCTGCAGG	1 cut(s)	329
SchI	GAGTC	2 cut(s)	24, 353
SdaI	CCTGCAGG	1 cut(s)	329
SduI	GDGCHC	2 cut(s)	26, 305
SetI	ASST	7 cut(s)	16, 26, 48, 67, 143, 206, 315
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	2 cut(s)	194, 325
Sfr274I	CTCGAG	1 cut(s)	341
SgrDI	CGTCGACG	1 cut(s)	178
SlaI	CTCGAG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse8387I	CCTGCAGG	1 cut(s)	329
Sse9I	AATT	3 cut(s)	415, 421, 432
SsiI	CCGC	4 cut(s)	54, 97, 277, 295
SspMI	CTAG	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	91, 307
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	4 cut(s)	72, 179, 342, 347
TasI	AATT	3 cut(s)	415, 421, 432
TfiI	GAWTC	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	2 cut(s)	176, 310
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	5 cut(s)	193, 196, 320, 361, 364
Tsp45I	GTSAC	1 cut(s)	136
TspGWI	ACGGA	2 cut(s)	121, 197
TspRI	CASTG	2 cut(s)	176, 310
Van91I	CCANNNNNTGG	1 cut(s)	376
XhoI	CTCGAG	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	179
XspI	CTAG	1 cut(s)	254
ZraI	GACGTC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.