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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G13330 AT4G13330 AT4G13330 AT4G13330 AT4G13330 AT4G13330 |
| fragaria_vesca | FvH4_4g04570 |
| malus_domestica | MD07G1289900.v1.1 MD16G1226200.v1.1 |
| prunus_persica | Prupe.1G048100_v2.0.a1 |
| pyrus_communis | pycom07g26260 pycom13g19560 pycom13g19570 pycom16g18920 |
| rosa_chinensis | RchiOBHm_Chr4g0395361 |
| rosa_laevigata | RLG00000009628 |
| rosa_multiflora | Rmu_sc0002791.1_g000012 Rmu_sc0010817.1_g000020 |
| rosa_roxburghii | Rroxscaffold_5G00340310 |
| rosa_rugosa | Rorug03G0358000 |
| rosa_samantha | Rh4AG059400 Rh4BG057700 Rh4CG063200 Rh4DG054300 |
| rosa_wichuraiana | Rw0G003260 Rw0G007700 Rw4G004720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 1494 |
| AccI | GTMKAC | 1 cut(s) | 1234 |
| AccII | CGCG | 3 cut(s) | 7, 1665, 1850 |
| AccIII | TCCGGA | 1 cut(s) | 1389 |
| AclI | AACGTT | 1 cut(s) | 521 |
| AclWI | GGATC | 3 cut(s) | 427, 2204, 2217 |
| AcoI | YGGCCR | 3 cut(s) | 1297, 1347, 1812 |
| AcsI | RAATTY | 2 cut(s) | 500, 1929 |
| AcuI | CTGAAG | 1 cut(s) | 630 |
| AcyI | GRCGYC | 2 cut(s) | 1231, 1414 |
| AfaI | GTAC | 6 cut(s) | 1042, 1261, 1295, 1345, 1410, 2333 |
| AfeI | AGCGCT | 1 cut(s) | 855 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 1079, 1106, 1364, 1423, 1455, 2073 |
| AflII | CTTAAG | 1 cut(s) | 1787 |
| AgsI | TTSAA | 6 cut(s) | 31, 98, 505, 1934, 1958, 2278 |
| AjiI | CACGTC | 2 cut(s) | 364, 2368 |
| AjnI | CCWGG | 3 cut(s) | 700, 1078, 1105 |
| Alw21I | GWGCWC | 5 cut(s) | 1223, 1289, 1376, 1650, 1700 |
| Alw26I | GTCTC | 7 cut(s) | 332, 724, 1080, 1107, 1188, 1528, 2341 |
| AlwI | GGATC | 3 cut(s) | 427, 2204, 2217 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2267 |
| Ama87I | CYCGRG | 3 cut(s) | 1288, 1375, 2338 |
| Aor13HI | TCCGGA | 1 cut(s) | 1389 |
| Aor51HI | AGCGCT | 1 cut(s) | 855 |
| AoxI | GGCC | 7 cut(s) | 47, 814, 1297, 1347, 1355, 1477, 1812 |
| ApoI | RAATTY | 2 cut(s) | 500, 1929 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1869 |
| AspLEI | GCGC | 6 cut(s) | 7, 271, 856, 1309, 1665, 1667 |
| AspS9I | GGNCC | 4 cut(s) | 1056, 1356, 1440, 1860 |
| AsuC2I | CCSGG | 2 cut(s) | 585, 842 |
| AsuHPI | GGTGA | 7 cut(s) | 371, 397, 559, 968, 1864, 2040, 2260 |
| AvaI | CYCGRG | 3 cut(s) | 1288, 1375, 2338 |
| AvaII | GGWCC | 3 cut(s) | 1056, 1440, 1860 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1601, 1634 |
| BalI | TGGCCA | 1 cut(s) | 1814 |
| BamHI | GGATCC | 1 cut(s) | 2209 |
| BanII | GRGCYC | 4 cut(s) | 148, 1223, 1289, 1376 |
| BauI | CACGAG | 1 cut(s) | 2087 |
| BbsI | GAAGAC | 3 cut(s) | 318, 2152, 2190 |
| Bbv12I | GWGCWC | 5 cut(s) | 1223, 1289, 1376, 1650, 1700 |
| BbvCI | CCTCAGC | 3 cut(s) | 90, 2118, 2237 |
| BccI | CCATC | 8 cut(s) | 287, 363, 622, 1238, 1578, 2035, 2171, 2305 |
| BceAI | ACGGC | 5 cut(s) | 324, 1312, 1362, 1401, 2027 |
| BciT130I | CCWGG | 3 cut(s) | 702, 1080, 1107 |
| BciVI | GTATCC | 1 cut(s) | 2056 |
| BclI | TGATCA | 1 cut(s) | 1047 |
| BcnI | CCSGG | 2 cut(s) | 585, 842 |
| BcoDI | GTCTC | 7 cut(s) | 332, 724, 1080, 1107, 1188, 1528, 2341 |
| BfaI | CTAG | 7 cut(s) | 164, 210, 243, 534, 1029, 1134, 1923 |
| BfmI | CTRYAG | 5 cut(s) | 1249, 1589, 1818, 2306, 2351 |
| BfoI | RGCGCY | 1 cut(s) | 857 |
| BfrI | CTTAAG | 1 cut(s) | 1787 |
| BfuI | GTATCC | 1 cut(s) | 2056 |
| BmcAI | AGTACT | 1 cut(s) | 1042 |
| Bme1390I | CCNGG | 5 cut(s) | 585, 702, 842, 1080, 1107 |
| Bme18I | GGWCC | 3 cut(s) | 1056, 1440, 1860 |
| BmeT110I | CYCGRG | 3 cut(s) | 1288, 1375, 2338 |
| BmgBI | CACGTC | 2 cut(s) | 364, 2368 |
| BmgT120I | GGNCC | 4 cut(s) | 1056, 1356, 1440, 1860 |
| BmiI | GGNNCC | 5 cut(s) | 1057, 1734, 1861, 2211, 2290 |
| BmrFI | CCNGG | 5 cut(s) | 585, 702, 842, 1080, 1107 |
| BmrI | ACTGGG | 1 cut(s) | 1866 |
| BmsI | GCATC | 6 cut(s) | 378, 1580, 1832, 2091, 2104, 2158 |
| BmuI | ACTGGG | 1 cut(s) | 1866 |
| BoxI | GACNNNNGTC | 1 cut(s) | 702 |
| BpiI | GAAGAC | 3 cut(s) | 318, 2152, 2190 |
| BpmI | CTGGAG | 1 cut(s) | 1101 |
| Bpu10I | CCTNAGC | 3 cut(s) | 90, 2118, 2237 |
| BpuEI | CTTGAG | 3 cut(s) | 134, 683, 748 |
| BpuMI | CCSGG | 2 cut(s) | 585, 842 |
| Bsa29I | ATCGAT | 3 cut(s) | 201, 626, 1742 |
| BsaHI | GRCGYC | 2 cut(s) | 1231, 1414 |
| BsaI | GGTCTC | 2 cut(s) | 1080, 1107 |
| BsaJI | CCNNGG | 8 cut(s) | 158, 414, 700, 1078, 1105, 1449, 1995, 2058 |
| BsaWI | WCCGGW | 2 cut(s) | 1389, 1735 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1371, 1401 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 1079, 1106, 1364, 1423, 1455, 2073 |
| Bse1I | ACTGG | 3 cut(s) | 77, 1442, 1861 |
| Bse3DI | GCAATG | 3 cut(s) | 253, 1519, 1765 |
| BseAI | TCCGGA | 1 cut(s) | 1389 |
| BseBI | CCWGG | 3 cut(s) | 702, 1080, 1107 |
| BseCI | ATCGAT | 3 cut(s) | 201, 626, 1742 |
| BseDI | CCNNGG | 8 cut(s) | 158, 414, 700, 1078, 1105, 1449, 1995, 2058 |
| BseGI | GGATG | 4 cut(s) | 374, 1015, 2082, 2297 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 1079, 1106, 1364, 1423, 1455, 2073 |
| BseMI | GCAATG | 3 cut(s) | 253, 1519, 1765 |
| BseNI | ACTGG | 3 cut(s) | 77, 1442, 1861 |
| BsePI | GCGCGC | 1 cut(s) | 1663 |
| BseRI | GAGGAG | 2 cut(s) | 993, 1098 |
| BseYI | CCCAGC | 4 cut(s) | 538, 1213, 1553, 1805 |
| Bsh1236I | CGCG | 3 cut(s) | 7, 1665, 1850 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1730, 1746 |
| BshFI | GGCC | 7 cut(s) | 49, 816, 1299, 1349, 1357, 1479, 1814 |
| BshVI | ATCGAT | 3 cut(s) | 201, 626, 1742 |
| BsiEI | CGRYCG | 2 cut(s) | 1730, 1746 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1223, 1289, 1376, 1650, 1700 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1288, 1375, 2338 |
| BsiSI | CCGG | 5 cut(s) | 585, 841, 1390, 1736, 2006 |
| BslFI | GGGAC | 7 cut(s) | 544, 681, 1056, 1083, 1110, 1392, 1873 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 1079, 1106, 1364, 1423, 1455, 2073 |
| BsmAI | GTCTC | 7 cut(s) | 332, 724, 1080, 1107, 1188, 1528, 2341 |
| BsmBI | CGTCTC | 1 cut(s) | 2341 |
| BsmFI | GGGAC | 7 cut(s) | 544, 681, 1056, 1083, 1110, 1392, 1873 |
| BsmI | GAATGC | 1 cut(s) | 1030 |
| BsnI | GGCC | 7 cut(s) | 49, 816, 1299, 1349, 1357, 1479, 1814 |
| Bso31I | GGTCTC | 2 cut(s) | 1080, 1107 |
| BsoBI | CYCGRG | 3 cut(s) | 1288, 1375, 2338 |
| Bsp1286I | GDGCHC | 6 cut(s) | 148, 1223, 1289, 1376, 1650, 1700 |
| Bsp13I | TCCGGA | 1 cut(s) | 1389 |
| Bsp143I | GATC | 7 cut(s) | 217, 262, 419, 1047, 1727, 1743, 2209 |
| Bsp19I | CCATGG | 2 cut(s) | 1995, 2058 |
| BspANI | GGCC | 7 cut(s) | 49, 816, 1299, 1349, 1357, 1479, 1814 |
| BspDI | ATCGAT | 3 cut(s) | 201, 626, 1742 |
| BspEI | TCCGGA | 1 cut(s) | 1389 |
| BspFNI | CGCG | 3 cut(s) | 7, 1665, 1850 |
| BspHI | TCATGA | 1 cut(s) | 1842 |
| BspLI | GGNNCC | 5 cut(s) | 1057, 1734, 1861, 2211, 2290 |
| BspMAI | CTGCAG | 4 cut(s) | 1253, 1593, 2310, 2355 |
| BspPI | GGATC | 3 cut(s) | 427, 2204, 2217 |
| BspQI | GCTCTTC | 1 cut(s) | 1782 |
| BspTI | CTTAAG | 1 cut(s) | 1787 |
| BspTNI | GGTCTC | 2 cut(s) | 1080, 1107 |
| BsrBI | CCGCTC | 1 cut(s) | 1494 |
| BsrDI | GCAATG | 3 cut(s) | 253, 1519, 1765 |
| BsrI | ACTGG | 3 cut(s) | 77, 1442, 1861 |
| BssECI | CCNNGG | 8 cut(s) | 158, 414, 700, 1078, 1105, 1449, 1995, 2058 |
| BssHII | GCGCGC | 1 cut(s) | 1663 |
| BssMI | GATC | 7 cut(s) | 217, 262, 419, 1047, 1727, 1743, 2209 |
| BssNI | GRCGYC | 2 cut(s) | 1231, 1414 |
| BssSI | CACGAG | 1 cut(s) | 2087 |
| BssT1I | CCWWGG | 4 cut(s) | 158, 414, 1995, 2058 |
| Bst2BI | CACGAG | 1 cut(s) | 2087 |
| Bst2UI | CCWGG | 3 cut(s) | 702, 1080, 1107 |
| Bst4CI | ACNGT | 8 cut(s) | 600, 759, 1045, 1486, 1702, 1911, 2068, 2288 |
| Bst6I | CTCTTC | 4 cut(s) | 993, 1259, 1599, 1782 |
| BstACI | GRCGYC | 2 cut(s) | 1231, 1414 |
| BstAFI | CTTAAG | 1 cut(s) | 1787 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2317 |
| BstC8I | GCNNGC | 7 cut(s) | 818, 1219, 1665, 2036, 2040, 2351, 2355 |
| BstDSI | CCRYGG | 2 cut(s) | 1995, 2058 |
| BstF5I | GGATG | 4 cut(s) | 374, 1015, 2082, 2297 |
| BstFNI | CGCG | 3 cut(s) | 7, 1665, 1850 |
| BstH2I | RGCGCY | 1 cut(s) | 857 |
| BstHHI | GCGC | 6 cut(s) | 7, 271, 856, 1309, 1665, 1667 |
| BstKTI | GATC | 7 cut(s) | 220, 265, 422, 1050, 1730, 1746, 2212 |
| BstMAI | GTCTC | 7 cut(s) | 332, 724, 1080, 1107, 1188, 1528, 2341 |
| BstMBI | GATC | 7 cut(s) | 217, 262, 419, 1047, 1727, 1743, 2209 |
| BstMCI | CGRYCG | 2 cut(s) | 1730, 1746 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 169, 927, 1034, 1671, 1811, 1820, 2317 |
| BstNI | CCWGG | 3 cut(s) | 702, 1080, 1107 |
| BstNSI | RCATGY | 1 cut(s) | 1098 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 702 |
| BstSCI | CCNGG | 5 cut(s) | 583, 700, 840, 1078, 1105 |
| BstSFI | CTRYAG | 5 cut(s) | 1249, 1589, 1818, 2306, 2351 |
| BstUI | CGCG | 3 cut(s) | 7, 1665, 1850 |
| BstV2I | GAAGAC | 3 cut(s) | 318, 2152, 2190 |
| BstX2I | RGATCY | 1 cut(s) | 2209 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2059 |
| BstYI | RGATCY | 1 cut(s) | 2209 |
| Bsu15I | ATCGAT | 3 cut(s) | 201, 626, 1742 |
| BsuI | GTATCC | 1 cut(s) | 2056 |
| BsuRI | GGCC | 7 cut(s) | 49, 816, 1299, 1349, 1357, 1479, 1814 |
| BsuTUI | ATCGAT | 3 cut(s) | 201, 626, 1742 |
| BtgI | CCRYGG | 2 cut(s) | 1995, 2058 |
| BtgZI | GCGATG | 1 cut(s) | 306 |
| BtrI | CACGTC | 2 cut(s) | 364, 2368 |
| BtsCI | GGATG | 4 cut(s) | 374, 1015, 2082, 2297 |
| BtsIMutI | CAGTG | 1 cut(s) | 329 |
| Cac8I | GCNNGC | 7 cut(s) | 818, 1219, 1665, 2036, 2040, 2351, 2355 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2267 |
| CciI | TCATGA | 1 cut(s) | 1842 |
| CfoI | GCGC | 6 cut(s) | 7, 271, 856, 1309, 1665, 1667 |
| Cfr13I | GGNCC | 4 cut(s) | 1056, 1356, 1440, 1860 |
| ClaI | ATCGAT | 3 cut(s) | 201, 626, 1742 |
| CseI | GACGC | 2 cut(s) | 1220, 1422 |
| Csp6I | GTAC | 6 cut(s) | 1041, 1260, 1294, 1344, 1409, 2332 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1090, 1117, 1125, 1152 |
| CviQI | GTAC | 6 cut(s) | 1041, 1260, 1294, 1344, 1409, 2332 |
| DpnI | GATC | 7 cut(s) | 219, 264, 421, 1049, 1729, 1745, 2211 |
| DpnII | GATC | 7 cut(s) | 217, 262, 419, 1047, 1727, 1743, 2209 |
| EaeI | YGGCCR | 3 cut(s) | 1297, 1347, 1812 |
| Eam1104I | CTCTTC | 4 cut(s) | 993, 1259, 1599, 1782 |
| EarI | CTCTTC | 4 cut(s) | 993, 1259, 1599, 1782 |
| EciI | GGCGGA | 1 cut(s) | 1914 |
| Ecl136II | GAGCTC | 3 cut(s) | 1221, 1287, 1374 |
| Eco130I | CCWWGG | 4 cut(s) | 158, 414, 1995, 2058 |
| Eco24I | GRGCYC | 4 cut(s) | 148, 1223, 1289, 1376 |
| Eco31I | GGTCTC | 2 cut(s) | 1080, 1107 |
| Eco32I | GATATC | 2 cut(s) | 1655, 2272 |
| Eco47I | GGWCC | 3 cut(s) | 1056, 1440, 1860 |
| Eco47III | AGCGCT | 1 cut(s) | 855 |
| Eco53kI | GAGCTC | 3 cut(s) | 1221, 1287, 1374 |
| Eco57I | CTGAAG | 1 cut(s) | 630 |
| Eco88I | CYCGRG | 3 cut(s) | 1288, 1375, 2338 |
| EcoICRI | GAGCTC | 3 cut(s) | 1221, 1287, 1374 |
| EcoRI | GAATTC | 1 cut(s) | 500 |
| EcoRII | CCWGG | 3 cut(s) | 700, 1078, 1105 |
| EcoRV | GATATC | 2 cut(s) | 1655, 2272 |
| EcoT14I | CCWWGG | 4 cut(s) | 158, 414, 1995, 2058 |
| EcoT22I | ATGCAT | 1 cut(s) | 1096 |
| EcoT38I | GRGCYC | 4 cut(s) | 148, 1223, 1289, 1376 |
| ErhI | CCWWGG | 4 cut(s) | 158, 414, 1995, 2058 |
| Esp3I | CGTCTC | 1 cut(s) | 2341 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 804, 836 |
| FaqI | GGGAC | 7 cut(s) | 544, 681, 1056, 1083, 1110, 1392, 1873 |
| FauI | CCCGC | 4 cut(s) | 923, 1332, 1452, 1697 |
| FbaI | TGATCA | 1 cut(s) | 1047 |
| FblI | GTMKAC | 1 cut(s) | 1234 |
| FokI | GGATG | 4 cut(s) | 381, 1022, 2069, 2284 |
| FriOI | GRGCYC | 4 cut(s) | 148, 1223, 1289, 1376 |
| FspBI | CTAG | 7 cut(s) | 164, 210, 243, 534, 1029, 1134, 1923 |
| GlaI | GCGC | 6 cut(s) | 6, 270, 855, 1308, 1664, 1666 |
| GsaI | CCCAGC | 4 cut(s) | 542, 1217, 1557, 1809 |
| GsuI | CTGGAG | 1 cut(s) | 1101 |
| HaeII | RGCGCY | 1 cut(s) | 857 |
| HaeIII | GGCC | 7 cut(s) | 49, 816, 1299, 1349, 1357, 1479, 1814 |
| HapII | CCGG | 5 cut(s) | 585, 841, 1390, 1736, 2006 |
| HgaI | GACGC | 2 cut(s) | 1220, 1422 |
| HhaI | GCGC | 6 cut(s) | 7, 271, 856, 1309, 1665, 1667 |
| Hin1I | GRCGYC | 2 cut(s) | 1231, 1414 |
| Hin6I | GCGC | 6 cut(s) | 5, 269, 854, 1307, 1663, 1665 |
| HinP1I | GCGC | 6 cut(s) | 5, 269, 854, 1307, 1663, 1665 |
| HincII | GTYRAC | 1 cut(s) | 1235 |
| HindII | GTYRAC | 1 cut(s) | 1235 |
| HindIII | AAGCTT | 2 cut(s) | 302, 1903 |
| HpaII | CCGG | 5 cut(s) | 585, 841, 1390, 1736, 2006 |
| HphI | GGTGA | 7 cut(s) | 371, 397, 559, 968, 1864, 2040, 2260 |
| Hpy166II | GTNNAC | 3 cut(s) | 1235, 2251, 2403 |
| Hpy188III | TCNNGA | 9 cut(s) | 151, 406, 505, 1377, 1390, 1625, 1843, 2275, 2338 |
| Hpy8I | GTNNAC | 3 cut(s) | 1235, 2251, 2403 |
| Hpy99I | CGWCG | 5 cut(s) | 1195, 1236, 1416, 1535, 1685 |
| HpyAV | CCTTC | 9 cut(s) | 474, 635, 646, 676, 1211, 1424, 1469, 1551, 2264 |
| HpyCH4III | ACNGT | 8 cut(s) | 600, 759, 1045, 1486, 1702, 1911, 2068, 2288 |
| HpyCH4IV | ACGT | 4 cut(s) | 363, 521, 2334, 2367 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 169, 927, 1034, 1671, 1811, 1820, 2317 |
| HpySE526I | ACGT | 4 cut(s) | 363, 521, 2334, 2367 |
| Hsp92I | GRCGYC | 2 cut(s) | 1231, 1414 |
| HspAI | GCGC | 6 cut(s) | 5, 269, 854, 1307, 1663, 1665 |
| Kpn2I | TCCGGA | 1 cut(s) | 1389 |
| Ksp22I | TGATCA | 1 cut(s) | 1047 |
| Kzo9I | GATC | 7 cut(s) | 217, 262, 419, 1047, 1727, 1743, 2209 |
| LguI | GCTCTTC | 1 cut(s) | 1782 |
| LmnI | GCTCC | 4 cut(s) | 296, 851, 1226, 1499 |
| LweI | GCATC | 6 cut(s) | 378, 1580, 1832, 2091, 2104, 2158 |
| MaeI | CTAG | 7 cut(s) | 164, 210, 243, 534, 1029, 1134, 1923 |
| MaeII | ACGT | 4 cut(s) | 363, 521, 2334, 2367 |
| MaeIII | GTNAC | 6 cut(s) | 9, 359, 657, 1852, 2046, 2417 |
| MalI | GATC | 7 cut(s) | 219, 264, 421, 1049, 1729, 1745, 2211 |
| MbiI | CCGCTC | 1 cut(s) | 1494 |
| MboI | GATC | 7 cut(s) | 217, 262, 419, 1047, 1727, 1743, 2209 |
| MflI | RGATCY | 1 cut(s) | 2209 |
| MhlI | GDGCHC | 6 cut(s) | 148, 1223, 1289, 1376, 1650, 1700 |
| MlsI | TGGCCA | 1 cut(s) | 1814 |
| MluCI | AATT | 8 cut(s) | 84, 500, 513, 561, 618, 1831, 1929, 2016 |
| MluNI | TGGCCA | 1 cut(s) | 1814 |
| MlyI | GAGTC | 4 cut(s) | 332, 726, 922, 2017 |
| MmeI | TCCRAC | 1 cut(s) | 1083 |
| Mox20I | TGGCCA | 1 cut(s) | 1814 |
| Mph1103I | ATGCAT | 1 cut(s) | 1096 |
| MroI | TCCGGA | 1 cut(s) | 1389 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1869 |
| MscI | TGGCCA | 1 cut(s) | 1814 |
| MseI | TTAA | 9 cut(s) | 107, 524, 692, 846, 879, 1677, 1704, 1788, 2229 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2246 |
| Msp20I | TGGCCA | 1 cut(s) | 1814 |
| MspA1I | CMGCKG | 1 cut(s) | 1805 |
| MspCI | CTTAAG | 1 cut(s) | 1787 |
| MspI | CCGG | 5 cut(s) | 585, 841, 1390, 1736, 2006 |
| MspR9I | CCNGG | 5 cut(s) | 585, 702, 842, 1080, 1107 |
| Mva1269I | GAATGC | 1 cut(s) | 1030 |
| MvaI | CCWGG | 3 cut(s) | 702, 1080, 1107 |
| MvnI | CGCG | 3 cut(s) | 7, 1665, 1850 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 169, 927, 1034, 1671, 1811, 1820, 2317 |
| NciI | CCSGG | 2 cut(s) | 585, 842 |
| NcoI | CCATGG | 2 cut(s) | 1995, 2058 |
| NdeII | GATC | 7 cut(s) | 217, 262, 419, 1047, 1727, 1743, 2209 |
| NlaIV | GGNNCC | 5 cut(s) | 1057, 1734, 1861, 2211, 2290 |
| NmuCI | GTSAC | 3 cut(s) | 359, 1852, 2046 |
| NsiI | ATGCAT | 1 cut(s) | 1096 |
| NspI | RCATGY | 1 cut(s) | 1098 |
| PaeR7I | CTCGAG | 1 cut(s) | 2338 |
| PagI | TCATGA | 1 cut(s) | 1842 |
| PauI | GCGCGC | 1 cut(s) | 1663 |
| PciSI | GCTCTTC | 1 cut(s) | 1782 |
| PctI | GAATGC | 1 cut(s) | 1030 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1869 |
| PfeI | GAWTC | 7 cut(s) | 203, 1469, 1638, 1739, 2108, 2264, 2387 |
| Ple19I | CGATCG | 2 cut(s) | 1730, 1746 |
| PleI | GAGTC | 4 cut(s) | 331, 726, 921, 2017 |
| PpsI | GAGTC | 4 cut(s) | 331, 726, 921, 2017 |
| PshAI | GACNNNNGTC | 1 cut(s) | 702 |
| Psp124BI | GAGCTC | 3 cut(s) | 1223, 1289, 1376 |
| Psp1406I | AACGTT | 1 cut(s) | 521 |
| Psp6I | CCWGG | 3 cut(s) | 700, 1078, 1105 |
| PspFI | CCCAGC | 4 cut(s) | 538, 1213, 1553, 1805 |
| PspGI | CCWGG | 3 cut(s) | 700, 1078, 1105 |
| PspN4I | GGNNCC | 5 cut(s) | 1057, 1734, 1861, 2211, 2290 |
| PspPI | GGNCC | 4 cut(s) | 1056, 1356, 1440, 1860 |
| PstI | CTGCAG | 4 cut(s) | 1253, 1593, 2310, 2355 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2267 |
| PsuI | RGATCY | 1 cut(s) | 2209 |
| PteI | GCGCGC | 1 cut(s) | 1663 |
| PvuI | CGATCG | 2 cut(s) | 1730, 1746 |
| PvuII | CAGCTG | 1 cut(s) | 1805 |
| RsaI | GTAC | 6 cut(s) | 1042, 1261, 1295, 1345, 1410, 2333 |
| RsaNI | GTAC | 6 cut(s) | 1041, 1260, 1294, 1344, 1409, 2332 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2246 |
| SacI | GAGCTC | 3 cut(s) | 1223, 1289, 1376 |
| SalI | GTCGAC | 1 cut(s) | 1233 |
| SapI | GCTCTTC | 1 cut(s) | 1782 |
| SaqAI | TTAA | 9 cut(s) | 107, 524, 692, 846, 879, 1677, 1704, 1788, 2229 |
| Sau3AI | GATC | 7 cut(s) | 217, 262, 419, 1047, 1727, 1743, 2209 |
| Sau96I | GGNCC | 4 cut(s) | 1056, 1356, 1440, 1860 |
| SbfI | CCTGCAGG | 1 cut(s) | 2355 |
| ScaI | AGTACT | 1 cut(s) | 1042 |
| SchI | GAGTC | 4 cut(s) | 332, 726, 922, 2017 |
| ScrFI | CCNGG | 5 cut(s) | 585, 702, 842, 1080, 1107 |
| SdaI | CCTGCAGG | 1 cut(s) | 2355 |
| SduI | GDGCHC | 6 cut(s) | 148, 1223, 1289, 1376, 1650, 1700 |
| SfaNI | GCATC | 6 cut(s) | 378, 1580, 1832, 2091, 2104, 2158 |
| SfcI | CTRYAG | 5 cut(s) | 1249, 1589, 1818, 2306, 2351 |
| Sfr274I | CTCGAG | 1 cut(s) | 2338 |
| SinI | GGWCC | 3 cut(s) | 1056, 1440, 1860 |
| SlaI | CTCGAG | 1 cut(s) | 2338 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2246 |
| SmlI | CTYRAG | 5 cut(s) | 149, 662, 727, 1787, 2338 |
| SmoI | CTYRAG | 5 cut(s) | 149, 662, 727, 1787, 2338 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2355 |
| Sse9I | AATT | 8 cut(s) | 84, 500, 513, 561, 618, 1831, 1929, 2016 |
| SspI | AATATT | 1 cut(s) | 1870 |
| SspMI | CTAG | 7 cut(s) | 164, 210, 243, 534, 1029, 1134, 1923 |
| SstI | GAGCTC | 3 cut(s) | 1223, 1289, 1376 |
| StyD4I | CCNGG | 5 cut(s) | 583, 700, 840, 1078, 1105 |
| StyI | CCWWGG | 4 cut(s) | 158, 414, 1995, 2058 |
| TaaI | ACNGT | 8 cut(s) | 600, 759, 1045, 1486, 1702, 1911, 2068, 2288 |
| TaiI | ACGT | 4 cut(s) | 366, 524, 2337, 2370 |
| TaqII | GACCGA | 1 cut(s) | 1877 |
| TasI | AATT | 8 cut(s) | 84, 500, 513, 561, 618, 1831, 1929, 2016 |
| TatI | WGTACW | 1 cut(s) | 1040 |
| TauI | GCSGC | 2 cut(s) | 175, 1037 |
| TfiI | GAWTC | 7 cut(s) | 203, 1469, 1638, 1739, 2108, 2264, 2387 |
| Tru1I | TTAA | 9 cut(s) | 107, 524, 692, 846, 879, 1677, 1704, 1788, 2229 |
| Tru9I | TTAA | 9 cut(s) | 107, 524, 692, 846, 879, 1677, 1704, 1788, 2229 |
| TscAI | CASTG | 1 cut(s) | 336 |
| TseFI | GTSAC | 3 cut(s) | 359, 1852, 2046 |
| Tsp45I | GTSAC | 3 cut(s) | 359, 1852, 2046 |
| TspDTI | ATGAA | 5 cut(s) | 695, 758, 1859, 2121, 2246 |
| TspGWI | ACGGA | 2 cut(s) | 56, 2290 |
| TspRI | CASTG | 1 cut(s) | 336 |
| Vha464I | CTTAAG | 1 cut(s) | 1787 |
| VpaK11BI | GGWCC | 3 cut(s) | 1056, 1440, 1860 |
| XapI | RAATTY | 2 cut(s) | 500, 1929 |
| XceI | RCATGY | 1 cut(s) | 1098 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2202 |
| XhoI | CTCGAG | 1 cut(s) | 2338 |
| XmiI | GTMKAC | 1 cut(s) | 1234 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1869 |
| XspI | CTAG | 7 cut(s) | 164, 210, 243, 534, 1029, 1134, 1923 |
| ZrmI | AGTACT | 1 cut(s) | 1042 |
| Zsp2I | ATGCAT | 1 cut(s) | 1096 |