RchiOBHm_Chr4g0395361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0006079
Physical Location & Seq
Forward (+)
11109048 .. 11110988
1941 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36780

Sequence Viewer

Length: 1407 bp
ATGACAAATACTGGAGACTCATTCAAAAAACCAAAAAAAAACTCAAGAGACAAATTAACCCAGAAGAAAGGTGATTTAATTAACCAAACCCAAATCCCACATCCAAATAGTAAAACCCTAAGACAGGTTTTACTTCCGGATCTGATGTGGCGCAGAAGAGCTGGATGGAACATCCGGAAGCTCTCAACCGCAATACGCCGCCGTATTAACGACGAGGGCGACTGGTCCTACGCCTCCGAATGGTGGGGCACCGAATCGGACGGCCGCATCGTCCTCCGCTCCACATCCGACAAAGGAAACGGTGTCGTCTCCGTCGCCGCTTTCCCTGCCTCCAATCCCAGCAAGCTTCACTGGGCAGCAACAGAGAGATGGCTAGAGCAAAGGTACGCAGAGATAAACAAAACCCAGTGTTACAATGAGAAGTTCAGAGTGCTTGGATATGAATGGCGCGCTCTTCGTTTTAATGATGACACTCGCCAAAGCACGGTCAAAATCTTGGCTGCTTTCCGGCAATCGGAGCCGGCCTCTTTTGCTCTTATGCAGCAACCTCATTGCCTCGCTGTTCCATATCTTAAGAGTATGTTATCAGTTGGGTTGGCTACCATAGCTTCTTGTGATTTCAATGTGAAGAAAGTGGCGACTGGGAAGGAAAAGATGAGTATTTTATGCATTGGCCATGGAGGAGGGAGCTTGCCATTGTTTTTGGCTAGTAAAATTCAAGGTGCTGCGGTTGACATAGTTGAAATCGATCCTGTTGTAATCTCAGCCTCGGTTCAAGCTATGGGGTTTCCTGCTTACTCAGTTATGAATCCGTCAGGCAAGCGCGCTTTTTCAAAACCCGATATCATGGATGAGGTTCTGTGGAAAGGCATCCACGAGAGGCTGTTTCTCTATGAATCAGATGCTGAGGATTTCATTCTCAAAACCACCAATGTATATGATATGATCTTCATTGATGCTTATGACGGGGAAGACATATTCCCTCGCAAGTTGTGGGACACAGATTCACCATTTATGAAAACTCTCAGCAGTCGGCTTCACCCCGATCATGGAACGGTTGTGGTGAACCTTCATTCAGATTCTGAGGTTTTGAATCCTGATGGCTCTGTTCCGTCCATTCTGGAGCAAGTTTTGCCAATGGGAAAGTATGTCTCCCAGGTTTGCCAAGCATACAAGGATGTGGTAGTTGGCAGTCGAGATTCTGGTTTGGGGTTTACTGTATCGGTTCCTTGGATCTGCAACATGTCTATGGTTGTTTGCAGAGGTTTTGGGATTAAGGGTGGATACACGAACAGGGATGTGATGTTGAATACTCTCATGTCCAAATCATTTGAAGTTGAAAATGTTCTCAACTTACCCTTCTCATGTTTGCAATATGTAAAGAGAGGTTTTAGTCTTCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

468

Amino Acids

52.52

Weight (kDa)

8.83

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 248
AccBSI CCGCTC 1 cut(s) 279
AccII CGCG 2 cut(s) 450, 825
AccIII TCCGGA 2 cut(s) 136, 174
AciI CCGC 6 cut(s) 189, 199, 265, 277, 318, 728
AclWI GGATC 3 cut(s) 147, 743, 1241
AcoI YGGCCR 2 cut(s) 262, 673
AcsI RAATTY 1 cut(s) 714
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 6 cut(s) 124, 240, 243, 484, 514, 1049
AflII CTTAAG 1 cut(s) 572
AflIII ACRYGT 1 cut(s) 1242
AjnI CCWGG 1 cut(s) 1155
AluBI AGCT 6 cut(s) 161, 181, 346, 608, 690, 779
AluI AGCT 6 cut(s) 161, 181, 346, 608, 690, 779
Alw26I GTCTC 4 cut(s) 9, 42, 313, 1156
AlwI GGATC 3 cut(s) 147, 743, 1241
AlwNI CAGNNNCTG 2 cut(s) 905, 1082
Aor13HI TCCGGA 2 cut(s) 136, 174
AoxI GGCC 3 cut(s) 262, 522, 673
ApeKI GCWGC 4 cut(s) 356, 500, 541, 725
ApoI RAATTY 1 cut(s) 714
Asp700I GAANNNNTTC 1 cut(s) 1344
AspLEI GCGC 5 cut(s) 153, 450, 452, 825, 827
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 4 cut(s) 83, 999, 1031, 1075
AvaII GGWCC 1 cut(s) 225
BaeGI GKGCMC 1 cut(s) 251
BalI TGGCCA 1 cut(s) 675
BanI GGYRCC 1 cut(s) 248
BauI CACGAG 1 cut(s) 875
BbsI GAAGAC 2 cut(s) 978, 1388
BbvCI CCTCAGC 1 cut(s) 906
BbvI GCAGC 4 cut(s) 368, 487, 553, 712
BccI CCATC 3 cut(s) 159, 363, 1094
BceAI ACGGC 2 cut(s) 186, 277
BciT130I CCWGG 1 cut(s) 1157
BciVI GTATCC 1 cut(s) 1277
BcoDI GTCTC 4 cut(s) 9, 42, 313, 1156
BfaI CTAG 2 cut(s) 374, 708
BfrI CTTAAG 1 cut(s) 572
BfuI GTATCC 1 cut(s) 1277
BisI GCNGC 7 cut(s) 199, 265, 318, 357, 501, 542, 726
BlsI GCNGC 7 cut(s) 200, 266, 319, 358, 502, 543, 727
Bme1390I CCNGG 1 cut(s) 1157
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 3 cut(s) 250, 519, 1227
BmrFI CCNGG 1 cut(s) 1157
BmrI ACTGGG 3 cut(s) 361, 400, 651
BmsI GCATC 4 cut(s) 276, 879, 892, 946
BmuI ACTGGG 3 cut(s) 361, 400, 651
BpiI GAAGAC 2 cut(s) 978, 1388
BplI GAGNNNNNCTC 2 cut(s) 509, 541
BpmI CTGGAG 2 cut(s) 33, 1142
Bpu10I CCTNAGC 1 cut(s) 906
BpuEI CTTGAG 1 cut(s) 28
Bsa29I ATCGAT 1 cut(s) 747
BsaJI CCNNGG 4 cut(s) 676, 768, 1155, 1229
BsaWI WCCGGW 2 cut(s) 136, 174
Bsc4I CCNNNNNNNGG 6 cut(s) 124, 240, 243, 484, 514, 1049
Bse118I RCCGGY 1 cut(s) 520
Bse1I ACTGG 5 cut(s) 16, 227, 356, 406, 646
Bse3DI GCAATG 1 cut(s) 550
BseAI TCCGGA 2 cut(s) 136, 174
BseBI CCWGG 1 cut(s) 1157
BseCI ATCGAT 1 cut(s) 747
BseDI CCNNGG 4 cut(s) 676, 768, 1155, 1229
BseGI GGATG 8 cut(s) 100, 170, 171, 284, 856, 870, 1183, 1303
BseLI CCNNNNNNNGG 6 cut(s) 124, 240, 243, 484, 514, 1049
BseMI GCAATG 1 cut(s) 550
BseMII CTCAG 5 cut(s) 777, 813, 897, 1039, 1074
BseNI ACTGG 5 cut(s) 16, 227, 356, 406, 646
BsePI GCGCGC 2 cut(s) 448, 823
BseRI GAGGAG 1 cut(s) 696
BseSI GKGCMC 1 cut(s) 251
BseX3I CGGCCG 1 cut(s) 262
BseXI GCAGC 4 cut(s) 368, 487, 553, 712
BseYI CCCAGC 1 cut(s) 338
Bsh1236I CGCG 2 cut(s) 450, 825
Bsh1285I CGRYCG 1 cut(s) 265
BshFI GGCC 3 cut(s) 264, 524, 675
BshNI GGYRCC 1 cut(s) 248
BshVI ATCGAT 1 cut(s) 747
BsiEI CGRYCG 1 cut(s) 265
BsiSI CCGG 4 cut(s) 137, 175, 508, 521
BslFI GGGAC 1 cut(s) 1010
BslI CCNNNNNNNGG 6 cut(s) 124, 240, 243, 484, 514, 1049
BsmAI GTCTC 4 cut(s) 9, 42, 313, 1156
BsmBI CGTCTC 1 cut(s) 313
BsmFI GGGAC 1 cut(s) 1010
BsnI GGCC 3 cut(s) 264, 524, 675
Bsp1286I GDGCHC 1 cut(s) 251
Bsp13I TCCGGA 2 cut(s) 136, 174
Bsp143I GATC 5 cut(s) 139, 748, 945, 1045, 1233
Bsp19I CCATGG 1 cut(s) 676
BspACI CCGC 6 cut(s) 189, 199, 265, 277, 318, 728
BspANI GGCC 3 cut(s) 264, 524, 675
BspCNI CTCAG 5 cut(s) 776, 812, 898, 1038, 1075
BspDI ATCGAT 1 cut(s) 747
BspEI TCCGGA 2 cut(s) 136, 174
BspFNI CGCG 2 cut(s) 450, 825
BspLI GGNNCC 3 cut(s) 250, 519, 1227
BspPI GGATC 3 cut(s) 147, 743, 1241
BspQI GCTCTTC 2 cut(s) 151, 459
BspT107I GGYRCC 1 cut(s) 248
BspTI CTTAAG 1 cut(s) 572
BsrBI CCGCTC 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 550
BsrFI RCCGGY 1 cut(s) 520
BsrI ACTGG 5 cut(s) 16, 227, 356, 406, 646
BssAI RCCGGY 1 cut(s) 520
BssECI CCNNGG 4 cut(s) 676, 768, 1155, 1229
BssHII GCGCGC 2 cut(s) 448, 823
BssMI GATC 5 cut(s) 139, 748, 945, 1045, 1233
BssSI CACGAG 1 cut(s) 875
BssT1I CCWWGG 2 cut(s) 676, 1229
Bst2BI CACGAG 1 cut(s) 875
Bst2UI CCWGG 1 cut(s) 1157
Bst4CI ACNGT 4 cut(s) 302, 487, 1057, 1219
Bst6I CTCTTC 2 cut(s) 151, 459
BstAFI CTTAAG 1 cut(s) 572
BstAPI GCANNNNNTGC 1 cut(s) 1132
BstC8I GCNNGC 6 cut(s) 344, 450, 522, 692, 821, 825
BstDEI CTNAG 6 cut(s) 119, 763, 799, 906, 1025, 1083
BstDSI CCRYGG 1 cut(s) 676
BstENI CCTNNNNNAGG 1 cut(s) 122
BstF5I GGATG 8 cut(s) 100, 170, 171, 284, 856, 870, 1183, 1303
BstFNI CGCG 2 cut(s) 450, 825
BstHHI GCGC 5 cut(s) 153, 450, 452, 825, 827
BstKTI GATC 5 cut(s) 142, 751, 948, 1048, 1236
BstMAI GTCTC 4 cut(s) 9, 42, 313, 1156
BstMBI GATC 5 cut(s) 139, 748, 945, 1045, 1233
BstMCI CGRYCG 1 cut(s) 265
BstMWI GCNNNNNNNGC 5 cut(s) 326, 517, 530, 605, 1132
BstNI CCWGG 1 cut(s) 1157
BstNSI RCATGY 1 cut(s) 1246
BstSCI CCNGG 1 cut(s) 1155
BstSLI GKGCMC 1 cut(s) 251
BstUI CGCG 2 cut(s) 450, 825
BstV1I GCAGC 4 cut(s) 368, 487, 553, 712
BstV2I GAAGAC 2 cut(s) 978, 1388
BstX2I RGATCY 2 cut(s) 139, 1233
BstYI RGATCY 2 cut(s) 139, 1233
BstZI CGGCCG 1 cut(s) 262
Bsu15I ATCGAT 1 cut(s) 747
BsuI GTATCC 1 cut(s) 1277
BsuRI GGCC 3 cut(s) 264, 524, 675
BsuTUI ATCGAT 1 cut(s) 747
BtgI CCRYGG 1 cut(s) 676
BtsCI GGATG 8 cut(s) 100, 170, 171, 284, 856, 870, 1183, 1303
BtsIMutI CAGTG 2 cut(s) 349, 413
Cac8I GCNNGC 6 cut(s) 344, 450, 522, 692, 821, 825
CaiI CAGNNNCTG 2 cut(s) 905, 1082
CfoI GCGC 5 cut(s) 153, 450, 452, 825, 827
Cfr10I RCCGGY 1 cut(s) 520
Cfr13I GGNCC 1 cut(s) 225
ClaI ATCGAT 1 cut(s) 747
Csp6I GTAC 1 cut(s) 385
CviAII CATG 6 cut(s) 677, 847, 1049, 1243, 1318, 1365
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 6 cut(s) 119, 763, 799, 906, 1025, 1083
DpnI GATC 5 cut(s) 141, 750, 947, 1047, 1235
DpnII GATC 5 cut(s) 139, 748, 945, 1045, 1233
EaeI YGGCCR 2 cut(s) 262, 673
EagI CGGCCG 1 cut(s) 262
Eam1104I CTCTTC 2 cut(s) 151, 459
EarI CTCTTC 2 cut(s) 151, 459
EclXI CGGCCG 1 cut(s) 262
Eco130I CCWWGG 2 cut(s) 676, 1229
Eco32I GATATC 1 cut(s) 844
Eco47I GGWCC 1 cut(s) 225
Eco52I CGGCCG 1 cut(s) 262
EcoNI CCTNNNNNAGG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 1155
EcoRV GATATC 1 cut(s) 844
EcoT14I CCWWGG 2 cut(s) 676, 1229
EcoT22I ATGCAT 1 cut(s) 671
ErhI CCWWGG 2 cut(s) 676, 1229
Esp3I CGTCTC 1 cut(s) 313
FaeI CATG 6 cut(s) 680, 850, 1052, 1246, 1321, 1368
FaqI GGGAC 1 cut(s) 1010
FatI CATG 6 cut(s) 676, 846, 1048, 1242, 1317, 1364
Fnu4HI GCNGC 7 cut(s) 199, 265, 318, 357, 501, 542, 726
FokI GGATG 8 cut(s) 87, 158, 177, 271, 857, 863, 1190, 1310
Fsp4HI GCNGC 7 cut(s) 199, 265, 318, 357, 501, 542, 726
FspBI CTAG 2 cut(s) 374, 708
GlaI GCGC 5 cut(s) 152, 449, 451, 824, 826
GluI GCNGC 7 cut(s) 199, 265, 318, 357, 501, 542, 726
GsaI CCCAGC 1 cut(s) 342
GsuI CTGGAG 2 cut(s) 33, 1142
HaeIII GGCC 3 cut(s) 264, 524, 675
HapII CCGG 4 cut(s) 137, 175, 508, 521
HhaI GCGC 5 cut(s) 153, 450, 452, 825, 827
Hin1II CATG 6 cut(s) 680, 850, 1052, 1246, 1321, 1368
Hin6I GCGC 5 cut(s) 151, 448, 450, 823, 825
HinP1I GCGC 5 cut(s) 151, 448, 450, 823, 825
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HindIII AAGCTT 1 cut(s) 344
HinfI GANTC 8 cut(s) 17, 254, 808, 896, 1004, 1079, 1093, 1199
HpaII CCGG 4 cut(s) 137, 175, 508, 521
HphI GGTGA 4 cut(s) 83, 999, 1031, 1075
Hpy166II GTNNAC 3 cut(s) 733, 1066, 1215
Hpy188I TCNGA 9 cut(s) 144, 238, 259, 289, 428, 517, 901, 1078, 1084
Hpy188III TCNNGA 7 cut(s) 45, 137, 175, 1097, 1121, 1196, 1400
Hpy8I GTNNAC 3 cut(s) 733, 1066, 1215
Hpy99I CGWCG 2 cut(s) 215, 317
HpyAV CCTTC 3 cut(s) 640, 1079, 1369
HpyCH4III ACNGT 4 cut(s) 302, 487, 1057, 1219
HpyCH4V TGCA 5 cut(s) 541, 669, 1239, 1260, 1372
HpyF10VI GCNNNNNNNGC 5 cut(s) 326, 517, 530, 605, 1132
HpyF3I CTNAG 6 cut(s) 119, 763, 799, 906, 1025, 1083
Hsp92II CATG 6 cut(s) 680, 850, 1052, 1246, 1321, 1368
HspAI GCGC 5 cut(s) 151, 448, 450, 823, 825
Kpn2I TCCGGA 2 cut(s) 136, 174
KroI GCCGGC 1 cut(s) 520
KroNI GCCGGC 1 cut(s) 522
Kzo9I GATC 5 cut(s) 139, 748, 945, 1045, 1233
LguI GCTCTTC 2 cut(s) 151, 459
LmnI GCTCC 4 cut(s) 284, 517, 687, 1123
Lsp1109I GCAGC 4 cut(s) 368, 487, 553, 712
LweI GCATC 4 cut(s) 276, 879, 892, 946
MaeI CTAG 2 cut(s) 374, 708
MaeIII GTNAC 1 cut(s) 410
MalI GATC 5 cut(s) 141, 750, 947, 1047, 1235
MbiI CCGCTC 1 cut(s) 279
MboI GATC 5 cut(s) 139, 748, 945, 1045, 1233
MboII GAAGA 7 cut(s) 76, 168, 446, 640, 940, 983, 1388
MflI RGATCY 2 cut(s) 139, 1233
MhlI GDGCHC 1 cut(s) 251
MlsI TGGCCA 1 cut(s) 675
MluCI AATT 3 cut(s) 53, 78, 714
MluNI TGGCCA 1 cut(s) 675
MlyI GAGTC 1 cut(s) 11
MmeI TCCRAC 1 cut(s) 312
Mox20I TGGCCA 1 cut(s) 675
Mph1103I ATGCAT 1 cut(s) 671
MroI TCCGGA 2 cut(s) 136, 174
MroNI GCCGGC 1 cut(s) 520
MroXI GAANNNNTTC 1 cut(s) 1344
MscI TGGCCA 1 cut(s) 675
MseI TTAA 8 cut(s) 56, 77, 81, 207, 462, 573, 1275, 1405
MslI CAYNNNNRTG 1 cut(s) 1247
Msp20I TGGCCA 1 cut(s) 675
MspCI CTTAAG 1 cut(s) 572
MspI CCGG 4 cut(s) 137, 175, 508, 521
MspR9I CCNGG 1 cut(s) 1157
MvaI CCWGG 1 cut(s) 1157
MvnI CGCG 2 cut(s) 450, 825
MwoI GCNNNNNNNGC 5 cut(s) 326, 517, 530, 605, 1132
NaeI GCCGGC 1 cut(s) 522
NcoI CCATGG 1 cut(s) 676
NdeII GATC 5 cut(s) 139, 748, 945, 1045, 1233
NgoMIV GCCGGC 1 cut(s) 520
NlaIII CATG 6 cut(s) 680, 850, 1052, 1246, 1321, 1368
NlaIV GGNNCC 3 cut(s) 250, 519, 1227
NsiI ATGCAT 1 cut(s) 671
NspI RCATGY 1 cut(s) 1246
PacI TTAATTAA 1 cut(s) 81
PauI GCGCGC 2 cut(s) 448, 823
PciI ACATGT 1 cut(s) 1242
PciSI GCTCTTC 2 cut(s) 151, 459
PcsI WCGNNNNNNNCGW 2 cut(s) 216, 267
PdiI GCCGGC 1 cut(s) 522
PdmI GAANNNNTTC 1 cut(s) 1344
PfeI GAWTC 7 cut(s) 254, 808, 896, 1004, 1079, 1093, 1199
PkrI GCNGC 7 cut(s) 200, 266, 319, 358, 502, 543, 727
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PscI ACATGT 1 cut(s) 1242
Psp6I CCWGG 1 cut(s) 1155
PspFI CCCAGC 1 cut(s) 338
PspGI CCWGG 1 cut(s) 1155
PspN4I GGNNCC 3 cut(s) 250, 519, 1227
PspPI GGNCC 1 cut(s) 225
PstNI CAGNNNCTG 2 cut(s) 905, 1082
PsuI RGATCY 2 cut(s) 139, 1233
PteI GCGCGC 2 cut(s) 448, 823
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 1247
SapI GCTCTTC 2 cut(s) 151, 459
SaqAI TTAA 8 cut(s) 56, 77, 81, 207, 462, 573, 1275, 1405
SatI GCNGC 7 cut(s) 199, 265, 318, 357, 501, 542, 726
Sau3AI GATC 5 cut(s) 139, 748, 945, 1045, 1233
Sau96I GGNCC 1 cut(s) 225
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 1157
SduI GDGCHC 1 cut(s) 251
SfaNI GCATC 4 cut(s) 276, 879, 892, 946
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 1247
SmlI CTYRAG 2 cut(s) 43, 572
SmoI CTYRAG 2 cut(s) 43, 572
Sse9I AATT 3 cut(s) 53, 78, 714
SsiI CCGC 6 cut(s) 189, 199, 265, 277, 318, 728
SspMI CTAG 2 cut(s) 374, 708
StyD4I CCNGG 1 cut(s) 1155
StyI CCWWGG 2 cut(s) 676, 1229
TaaI ACNGT 4 cut(s) 302, 487, 1057, 1219
TaqI TCGA 2 cut(s) 747, 1195
TasI AATT 3 cut(s) 53, 78, 714
TauI GCSGC 3 cut(s) 201, 267, 320
TfiI GAWTC 7 cut(s) 254, 808, 896, 1004, 1079, 1093, 1199
Tru1I TTAA 8 cut(s) 56, 77, 81, 207, 462, 573, 1275, 1405
Tru9I TTAA 8 cut(s) 56, 77, 81, 207, 462, 573, 1275, 1405
TscAI CASTG 2 cut(s) 356, 413
TseI GCWGC 4 cut(s) 356, 500, 541, 725
TspDTI ATGAA 7 cut(s) 456, 821, 904, 909, 940, 1031, 1061
TspGWI ACGGA 3 cut(s) 301, 801, 1101
TspRI CASTG 2 cut(s) 356, 413
Vha464I CTTAAG 1 cut(s) 572
VpaK11BI GGWCC 1 cut(s) 225
XagI CCTNNNNNAGG 1 cut(s) 122
XapI RAATTY 1 cut(s) 714
XceI RCATGY 1 cut(s) 1246
XmnI GAANNNNTTC 1 cut(s) 1344
XspI CTAG 2 cut(s) 374, 708
Zsp2I ATGCAT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.