AT4G14104

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0018291
Physical Location & Seq
Reverse (-)
8128708 .. 8129534
827 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14104.1

Sequence Viewer

Length: 435 bp
ATGATTTGCTACCCTACTCTCGAATCAGCCTTCGCAAGCACATGGATTTGTGCCCGCAAGACCGAATGGTCTCAGACCGCCTACGCCGAAGCTGTCCGCTATGCACATGATCTAGGTATGGACTTTACAACAGTCGTCCTAGACGTTAAAGTTGGTTCCTCCTTGTGGCTATTCGCTCCTATGATCTCTGATGATCTCTTCTCTCTCCGATGCCCACTCCCCGAGGACAACTACACTGTTACCGGTGCCGTCGTCCAAATGTTATTCCATAAGGCCGCCGCGAACAACGCCGTCTCAGAAATCTTCAATCTCGCTTCTATACCAGATGCTGACTACGGAAGCTTCATTCCTGGACCCCGCGAAGGATTCAACCTCTCAGCCTATTATGCCATCTCCAATGAAGGCAGCGATGAAGTTTCGAAATCTGCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.75

Weight (kDa)

4.41

Isoelectric Point (pI)

26.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018291)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14104
fragaria_vesca FvH4_3g23710
malus_domestica MD05G1343100.v1.1
pyrus_communis pycom04g13220 pycom05g25750
rosa_chinensis RchiOBHm_Chr1g0313051
rosa_roxburghii Rroxscaffold_1G00013670
rosa_rugosa Rorug05G0384700
rosa_samantha Rh2CG490700 Rh6DG101600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 67
AccB1I GGYRCC 1 cut(s) 245
AccII CGCG 2 cut(s) 281, 360
AciI CCGC 6 cut(s) 55, 78, 97, 276, 279, 358
AfiI CCNNNNNNNGG 2 cut(s) 165, 362
AgeI ACCGGT 1 cut(s) 242
AgsI TTSAA 2 cut(s) 307, 370
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 2 cut(s) 92, 342
AluI AGCT 2 cut(s) 92, 342
Alw26I GTCTC 2 cut(s) 75, 298
AlwNI CAGNNNCTG 1 cut(s) 329
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 405
AsiGI ACCGGT 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 353
AsuII TTCGAA 1 cut(s) 419
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 55
BanI GGYRCC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 417
BccI CCATC 1 cut(s) 398
BceAI ACGGC 3 cut(s) 233, 275, 413
BciT130I CCWGG 1 cut(s) 351
BcoDI GTCTC 2 cut(s) 75, 298
BfaI CTAG 2 cut(s) 113, 140
BisI GCNGC 3 cut(s) 276, 279, 406
BlsI GCNGC 3 cut(s) 277, 280, 407
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 1 cut(s) 353
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 353
BmiI GGNNCC 3 cut(s) 157, 247, 355
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 2 cut(s) 200, 316
Bpu14I TTCGAA 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 362
Bse118I RCCGGY 1 cut(s) 242
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 222
BseLI CCNNNNNNNGG 2 cut(s) 165, 362
BseMII CTCAG 3 cut(s) 86, 309, 390
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 1 cut(s) 417
Bsh1236I CGCG 2 cut(s) 281, 360
BshFI GGCC 1 cut(s) 275
BshNI GGYRCC 1 cut(s) 245
BshTI ACCGGT 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 165, 362
BsmAI GTCTC 2 cut(s) 75, 298
BsmBI CGTCTC 1 cut(s) 298
BsnI GGCC 1 cut(s) 275
Bso31I GGTCTC 1 cut(s) 75
BsoBI CYCGRG 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 3 cut(s) 109, 183, 193
BspACI CCGC 6 cut(s) 55, 78, 97, 276, 279, 358
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 3 cut(s) 85, 308, 389
BspFNI CGCG 2 cut(s) 281, 360
BspLI GGNNCC 3 cut(s) 157, 247, 355
BspT104I TTCGAA 1 cut(s) 419
BspT107I GGYRCC 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 75
BsrFI RCCGGY 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 3 cut(s) 109, 183, 193
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 2 cut(s) 133, 238
Bst6I CTCTTC 1 cut(s) 203
BstBI TTCGAA 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 37, 55
BstDEI CTNAG 3 cut(s) 72, 295, 376
BstFNI CGCG 2 cut(s) 281, 360
BstKTI GATC 3 cut(s) 112, 186, 196
BstMAI GTCTC 2 cut(s) 75, 298
BstMBI GATC 3 cut(s) 109, 183, 193
BstMWI GCNNNNNNNGC 2 cut(s) 287, 386
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 349
BstSLI GKGCMC 1 cut(s) 55
BstUI CGCG 2 cut(s) 281, 360
BstV1I GCAGC 1 cut(s) 417
BsuRI GGCC 1 cut(s) 275
BtgZI GCGATG 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 37, 55
CaiI CAGNNNCTG 1 cut(s) 329
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 353
CspAI ACCGGT 1 cut(s) 242
CviAII CATG 2 cut(s) 42, 107
CviJI RGCY 6 cut(s) 29, 92, 169, 275, 342, 380
CviKI_1 RGCY 6 cut(s) 29, 92, 169, 275, 342, 380
DdeI CTNAG 3 cut(s) 72, 295, 376
DpnI GATC 3 cut(s) 111, 185, 195
DpnII GATC 3 cut(s) 109, 183, 193
DrdI GACNNNNNNGTC 1 cut(s) 67
DseDI GACNNNNNNGTC 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco31I GGTCTC 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 349
Esp3I CGTCTC 1 cut(s) 298
FaeI CATG 2 cut(s) 45, 110
FaiI YATR 8 cut(s) 43, 102, 108, 119, 182, 270, 320, 387
FatI CATG 2 cut(s) 41, 106
FauI CCCGC 2 cut(s) 62, 365
Fnu4HI GCNGC 3 cut(s) 276, 279, 406
Fsp4HI GCNGC 3 cut(s) 276, 279, 406
FspBI CTAG 2 cut(s) 113, 140
GluI GCNGC 3 cut(s) 276, 279, 406
HaeIII GGCC 1 cut(s) 275
HapII CCGG 1 cut(s) 243
Hin1II CATG 2 cut(s) 45, 110
HindIII AAGCTT 1 cut(s) 340
HinfI GANTC 2 cut(s) 23, 366
HpaII CCGG 1 cut(s) 243
Hpy188I TCNGA 4 cut(s) 75, 190, 209, 298
Hpy188III TCNNGA 1 cut(s) 20
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 3 cut(s) 40, 356, 395
HpyCH4III ACNGT 2 cut(s) 133, 238
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 386
HpyF3I CTNAG 3 cut(s) 72, 295, 376
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 2 cut(s) 45, 110
Kzo9I GATC 3 cut(s) 109, 183, 193
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 4 cut(s) 256, 336, 336, 363
Lsp1109I GCAGC 1 cut(s) 417
LweI GCATC 2 cut(s) 200, 316
MaeI CTAG 2 cut(s) 113, 140
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 238
MalI GATC 3 cut(s) 111, 185, 195
MboI GATC 3 cut(s) 109, 183, 193
MboII GAAGA 2 cut(s) 190, 295
MhlI GDGCHC 1 cut(s) 55
MnlI CCTC 3 cut(s) 169, 217, 383
MseI TTAA 2 cut(s) 147, 433
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 351
MvnI CGCG 2 cut(s) 281, 360
MwoI GCNNNNNNNGC 2 cut(s) 287, 386
NdeII GATC 3 cut(s) 109, 183, 193
NlaIII CATG 2 cut(s) 45, 110
NlaIV GGNNCC 3 cut(s) 157, 247, 355
NspV TTCGAA 1 cut(s) 419
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 2 cut(s) 23, 366
PfoI TCCNGGA 1 cut(s) 349
PinAI ACCGGT 1 cut(s) 242
PkrI GCNGC 3 cut(s) 277, 280, 407
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 3 cut(s) 157, 247, 355
PspPI GGNCC 1 cut(s) 353
PstNI CAGNNNCTG 1 cut(s) 329
SaqAI TTAA 2 cut(s) 147, 433
SatI GCNGC 3 cut(s) 276, 279, 406
Sau3AI GATC 3 cut(s) 109, 183, 193
Sau96I GGNCC 1 cut(s) 353
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 1 cut(s) 55
SetI ASST 5 cut(s) 94, 118, 147, 344, 375
SfaNI GCATC 2 cut(s) 200, 316
SfuI TTCGAA 1 cut(s) 419
SinI GGWCC 1 cut(s) 353
SsiI CCGC 6 cut(s) 55, 78, 97, 276, 279, 358
SspMI CTAG 2 cut(s) 113, 140
StyD4I CCNGG 1 cut(s) 349
TaaI ACNGT 2 cut(s) 133, 238
TaiI ACGT 1 cut(s) 147
TaqI TCGA 2 cut(s) 21, 419
TaqII GACCGA 1 cut(s) 77
TauI GCSGC 2 cut(s) 278, 281
TfiI GAWTC 2 cut(s) 23, 366
Tru1I TTAA 2 cut(s) 147, 433
Tru9I TTAA 2 cut(s) 147, 433
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 405
TspDTI ATGAA 3 cut(s) 334, 414, 426
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 353
XspI CTAG 2 cut(s) 113, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.