Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0018291

Physical Location & Seq

Genomic Coordinates Forward (+)

46337391 .. 46340009

Gene Structure 2619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1343100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCGGGCTTCCGGTCCTTGAAATCCCTAATCCAAAACCCTAAAAAATCAAGAACCTTCGTCACCGCCACCGCCTCCTCCTCCTCCATCTCCGCCCCTCTTCACTACTCTCCTCTCTCCTACCCTCTCTCCCACCCCCTCGTCCGATTGCCGTCTCAGATTTCCAGTTCCTTCCTCTCTCCGCTTTCCAATTGGATCGTTCCTTTTCACGGACCGCTCTTCCTCTCTTTCCCTCCATGGAAGCTCTCGCAGTCCTCCACTCCGCTTTACATCGTCGGAAACGGCGTCGTTCTCAGAAAGATCGAAGCTTCATTGAACTTGAACCTGCTAGGGAGGAGACCGAGCTTCCCGCTCCCATTGGAAGTTGGGTCACTATCGCCGGCTCCGACGGTCGTGGATCGCCGTGTCGGGTTGAAAGAGGGCGCTGACGATTTCGTCAATTTGCCCAATTTGATCTCCATGAGTCGGTTGATTTCAGGTCCTTTCCTTGGATGGATGATCACGAATGAATGGTACTCTTCTGCAATGGCGGGGTTGGTTATATCTGGGGCAACTGATTGGTTGGATGGATACATGGCTAGGAGGATGAAGATCAATTCTGTTGTTGGGTCCTATCTGGATCCCCTTGCTGACAAGGTTCTTATTGGATGCGTTGCTGTGGCCTTGGTATATAAGGGTCTTCTTCATCCTGGACTTGTTGGGCTCATTGTGTTCCGGGATGTTGGCCTTGTTGGTGGTGCAGTATATCAAAGAGCTAGTAGCTTGGGGTGGAAGTGGAACAGTTGGTCCGACTTTTTCAACCTTGATGAAACCCGCCCCGAGAAGGTGGAACCTCTCTTTATTAGTAAGCTTAACACAGTCTTCCAGCTTATTTTGGTAGCGGCAGTTCTTCTTCAACCGGAGTTTGGAACACAAGAAACTGAGTCATACATCACATACCTGAGTTGGTTAGTTGCATCAACAACATTGGCTTCCACAGCAGCATACGGCGCCCAACACTTGAGGAGATCTGCATTGACCGCTCAGAAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0008808 GO:0009058 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010243 GO:0014070 GO:0016020 GO:0016740 GO:0016772 GO:0016780 GO:0019637 GO:0030145 GO:0030572 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032049 GO:0033993 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0046683 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0090407 GO:0097066 GO:0097068 GO:1901576 GO:1901698 GO:1901700 GO:1904386 GO:1905711

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

345

Amino Acids

37.57

Weight (kDa)

9.63

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	147 - 318	7.7e-27	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14104
fragaria_vesca	FvH4_3g23710
malus_domestica	MD05G1343100.v1.1
pyrus_communis	pycom04g13220 pycom05g25750
rosa_chinensis	RchiOBHm_Chr1g0313051
rosa_roxburghii	Rroxscaffold_1G00013670
rosa_rugosa	Rorug05G0384700
rosa_samantha	Rh2CG490700 Rh6DG101600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	434
Acc36I	ACCTGC	1 cut(s)	333
AccB1I	GGYRCC	1 cut(s)	989
AccBSI	CCGCTC	3 cut(s)	217, 352, 1022
AclWI	GGATC	4 cut(s)	203, 405, 614, 627
AcyI	GRCGYC	2 cut(s)	285, 990
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	5 cut(s)	209, 465, 488, 823, 905
AgsI	TTSAA	6 cut(s)	22, 316, 322, 415, 799, 896
AjnI	CCWGG	1 cut(s)	688
AloI	GAACNNNNNNTCC	2 cut(s)	770, 802
AluBI	AGCT	7 cut(s)	244, 308, 345, 755, 762, 850, 868
AluI	AGCT	7 cut(s)	244, 308, 345, 755, 762, 850, 868
Alw26I	GTCTC	2 cut(s)	159, 331
AlwI	GGATC	4 cut(s)	203, 405, 614, 627
Ama87I	CYCGRG	1 cut(s)	818
AoxI	GGCC	2 cut(s)	660, 724
ApeKI	GCWGC	1 cut(s)	980
AspLEI	GCGC	2 cut(s)	425, 992
AspS9I	GGNCC	5 cut(s)	15, 212, 479, 609, 786
AsuC2I	CCSGG	1 cut(s)	716
AsuHPI	GGTGA	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	818
AvaII	GGWCC	5 cut(s)	15, 212, 479, 609, 786
BamHI	GGATCC	1 cut(s)	619
BanI	GGYRCC	1 cut(s)	989
BanII	GRGCYC	1 cut(s)	705
BbsI	GAAGAC	2 cut(s)	671, 853
BbvI	GCAGC	1 cut(s)	992
BccI	CCATC	3 cut(s)	95, 486, 560
BceAI	ACGGC	4 cut(s)	136, 298, 387, 1003
BciT130I	CCWGG	1 cut(s)	690
BciVI	GTATCC	1 cut(s)	563
BclI	TGATCA	1 cut(s)	498
BcnI	CCSGG	1 cut(s)	716
BcoDI	GTCTC	2 cut(s)	159, 331
BfaI	CTAG	3 cut(s)	329, 579, 756
BfoI	RGCGCY	2 cut(s)	426, 993
BfuAI	ACCTGC	1 cut(s)	333
BfuI	GTATCC	1 cut(s)	563
BglII	AGATCT	1 cut(s)	1007
BisI	GCNGC	2 cut(s)	882, 981
BlsI	GCNGC	2 cut(s)	883, 982
Bme1390I	CCNGG	2 cut(s)	690, 716
Bme18I	GGWCC	5 cut(s)	15, 212, 479, 609, 786
BmeT110I	CYCGRG	1 cut(s)	818
BmgT120I	GGNCC	5 cut(s)	15, 212, 479, 609, 786
BmiI	GGNNCC	5 cut(s)	384, 610, 621, 831, 991
BmrFI	CCNGG	2 cut(s)	690, 716
BmsI	GCATC	2 cut(s)	638, 965
BpiI	GAAGAC	2 cut(s)	671, 853
BpuEI	CTTGAG	1 cut(s)	1021
BpuMI	CCSGG	1 cut(s)	716
BsaBI	GATNNNNATC	1 cut(s)	590
BsaHI	GRCGYC	2 cut(s)	285, 990
BsaI	GGTCTC	1 cut(s)	331
BsaJI	CCNNGG	3 cut(s)	236, 487, 663
BsaWI	WCCGGW	2 cut(s)	12, 898
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	5 cut(s)	209, 465, 488, 823, 905
Bse118I	RCCGGY	1 cut(s)	379
Bse1I	ACTGG	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	590
BseBI	CCWGG	1 cut(s)	690
BseDI	CCNNGG	3 cut(s)	236, 487, 663
BseGI	GGATG	7 cut(s)	497, 501, 571, 591, 653, 685, 724
BseJI	GATNNNNATC	1 cut(s)	590
BseLI	CCNNNNNNNGG	5 cut(s)	209, 465, 488, 823, 905
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	4 cut(s)	170, 307, 912, 932
BseNI	ACTGG	1 cut(s)	165
BseRI	GAGGAG	6 cut(s)	67, 70, 73, 102, 349, 1018
BseXI	GCAGC	1 cut(s)	992
BsgI	GTGCAG	1 cut(s)	759
Bsh1285I	CGRYCG	1 cut(s)	393
BshFI	GGCC	2 cut(s)	662, 726
BshNI	GGYRCC	1 cut(s)	989
BsiEI	CGRYCG	1 cut(s)	393
BsiHKCI	CYCGRG	1 cut(s)	818
BsiSI	CCGG	4 cut(s)	13, 380, 715, 899
BslI	CCNNNNNNNGG	5 cut(s)	209, 465, 488, 823, 905
BsmAI	GTCTC	2 cut(s)	159, 331
BsmBI	CGTCTC	1 cut(s)	159
BsnI	GGCC	2 cut(s)	662, 726
Bso31I	GGTCTC	1 cut(s)	331
BsoBI	CYCGRG	1 cut(s)	818
Bsp1286I	GDGCHC	1 cut(s)	705
Bsp143I	GATC	8 cut(s)	195, 300, 397, 453, 498, 591, 619, 1007
Bsp19I	CCATGG	1 cut(s)	236
BspANI	GGCC	2 cut(s)	662, 726
BspCNI	CTCAG	4 cut(s)	169, 306, 913, 933
BspLI	GGNNCC	5 cut(s)	384, 610, 621, 831, 991
BspMI	ACCTGC	1 cut(s)	333
BspPI	GGATC	4 cut(s)	203, 405, 614, 627
BspQI	GCTCTTC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	989
BspTNI	GGTCTC	1 cut(s)	331
BsrBI	CCGCTC	3 cut(s)	217, 352, 1022
BsrDI	GCAATG	1 cut(s)	531
BsrFI	RCCGGY	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	379
BssECI	CCNNGG	3 cut(s)	236, 487, 663
BssMI	GATC	8 cut(s)	195, 300, 397, 453, 498, 591, 619, 1007
BssNI	GRCGYC	2 cut(s)	285, 990
BssT1I	CCWWGG	3 cut(s)	236, 487, 663
Bst2UI	CCWGG	1 cut(s)	690
Bst4CI	ACNGT	3 cut(s)	391, 782, 859
Bst6I	CTCTTC	3 cut(s)	105, 224, 523
BstACI	GRCGYC	2 cut(s)	285, 990
BstC8I	GCNNGC	2 cut(s)	7, 381
BstDEI	CTNAG	5 cut(s)	156, 293, 921, 941, 1023
BstDSI	CCRYGG	1 cut(s)	236
BstF5I	GGATG	7 cut(s)	497, 501, 571, 591, 653, 685, 724
BstH2I	RGCGCY	2 cut(s)	426, 993
BstHHI	GCGC	2 cut(s)	425, 992
BstKTI	GATC	8 cut(s)	198, 303, 400, 456, 501, 594, 622, 1010
BstMAI	GTCTC	2 cut(s)	159, 331
BstMBI	GATC	8 cut(s)	195, 300, 397, 453, 498, 591, 619, 1007
BstMCI	CGRYCG	1 cut(s)	393
BstMWI	GCNNNNNNNGC	3 cut(s)	977, 989, 1019
BstNI	CCWGG	1 cut(s)	690
BstSCI	CCNGG	2 cut(s)	688, 714
BstV1I	GCAGC	1 cut(s)	992
BstV2I	GAAGAC	2 cut(s)	671, 853
BstX2I	RGATCY	2 cut(s)	619, 1007
BstYI	RGATCY	2 cut(s)	619, 1007
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	662, 726
BtgI	CCRYGG	1 cut(s)	236
BtsCI	GGATG	7 cut(s)	497, 501, 571, 591, 653, 685, 724
BveI	ACCTGC	1 cut(s)	333
Cac8I	GCNNGC	2 cut(s)	7, 381
CfoI	GCGC	2 cut(s)	425, 992
Cfr10I	RCCGGY	1 cut(s)	379
Cfr13I	GGNCC	5 cut(s)	15, 212, 479, 609, 786
CpoI	CGGWCCG	1 cut(s)	212
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	514
CspI	CGGWCCG	1 cut(s)	212
CviAII	CATG	3 cut(s)	237, 460, 574
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	5 cut(s)	156, 293, 921, 941, 1023
DinI	GGCGCC	1 cut(s)	991
DpnI	GATC	8 cut(s)	197, 302, 399, 455, 500, 593, 621, 1009
DpnII	GATC	8 cut(s)	195, 300, 397, 453, 498, 591, 619, 1007
DrdI	GACNNNNNNGTC	1 cut(s)	434
DseDI	GACNNNNNNGTC	1 cut(s)	434
Eam1104I	CTCTTC	3 cut(s)	105, 224, 523
EarI	CTCTTC	3 cut(s)	105, 224, 523
EciI	GGCGGA	1 cut(s)	82
Eco130I	CCWWGG	3 cut(s)	236, 487, 663
Eco24I	GRGCYC	1 cut(s)	705
Eco31I	GGTCTC	1 cut(s)	331
Eco47I	GGWCC	5 cut(s)	15, 212, 479, 609, 786
Eco88I	CYCGRG	1 cut(s)	818
EcoO109I	RGGNCCY	2 cut(s)	479, 609
EcoRII	CCWGG	1 cut(s)	688
EcoT14I	CCWWGG	3 cut(s)	236, 487, 663
EcoT38I	GRGCYC	1 cut(s)	705
EgeI	GGCGCC	1 cut(s)	991
EheI	GGCGCC	1 cut(s)	991
ErhI	CCWWGG	3 cut(s)	236, 487, 663
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	3 cut(s)	240, 463, 577
FatI	CATG	3 cut(s)	236, 459, 573
FauI	CCCGC	3 cut(s)	357, 523, 821
FbaI	TGATCA	1 cut(s)	498
Fnu4HI	GCNGC	2 cut(s)	882, 981
FokI	GGATG	7 cut(s)	504, 508, 578, 598, 660, 672, 731
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	2 cut(s)	882, 981
FspBI	CTAG	3 cut(s)	329, 579, 756
GlaI	GCGC	2 cut(s)	424, 991
GluI	GCNGC	2 cut(s)	882, 981
HaeII	RGCGCY	2 cut(s)	426, 993
HaeIII	GGCC	2 cut(s)	662, 726
HapII	CCGG	4 cut(s)	13, 380, 715, 899
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	2 cut(s)	425, 992
Hin1I	GRCGYC	2 cut(s)	285, 990
Hin1II	CATG	3 cut(s)	240, 463, 577
Hin6I	GCGC	2 cut(s)	423, 990
HinP1I	GCGC	2 cut(s)	423, 990
HindIII	AAGCTT	2 cut(s)	306, 848
HinfI	GANTC	2 cut(s)	463, 923
HpaII	CCGG	4 cut(s)	13, 380, 715, 899
HphI	GGTGA	1 cut(s)	55
Hpy188I	TCNGA	7 cut(s)	146, 159, 278, 296, 387, 790, 1026
Hpy188III	TCNNGA	3 cut(s)	51, 502, 617
Hpy99I	CGWCG	3 cut(s)	278, 290, 391
HpyAV	CCTTC	3 cut(s)	67, 181, 817
HpyCH4III	ACNGT	3 cut(s)	391, 782, 859
HpyCH4V	TGCA	4 cut(s)	524, 740, 956, 1013
HpyF10VI	GCNNNNNNNGC	3 cut(s)	977, 989, 1019
HpyF3I	CTNAG	5 cut(s)	156, 293, 921, 941, 1023
Hsp92I	GRCGYC	2 cut(s)	285, 990
Hsp92II	CATG	3 cut(s)	240, 463, 577
HspAI	GCGC	2 cut(s)	423, 990
KasI	GGCGCC	1 cut(s)	989
KroI	GCCGGC	1 cut(s)	379
KroNI	GCCGGC	1 cut(s)	381
Ksp22I	TGATCA	1 cut(s)	498
Kzo9I	GATC	8 cut(s)	195, 300, 397, 453, 498, 591, 619, 1007
LguI	GCTCTTC	1 cut(s)	224
LmnI	GCTCC	2 cut(s)	357, 388
Lsp1109I	GCAGC	1 cut(s)	992
LweI	GCATC	2 cut(s)	638, 965
MaeI	CTAG	3 cut(s)	329, 579, 756
MaeIII	GTNAC	2 cut(s)	61, 369
MalI	GATC	8 cut(s)	197, 302, 399, 455, 500, 593, 621, 1009
MbiI	CCGCTC	3 cut(s)	217, 352, 1022
MboI	GATC	8 cut(s)	195, 300, 397, 453, 498, 591, 619, 1007
MboII	GAAGA	9 cut(s)	92, 211, 510, 601, 671, 674, 853, 881, 884
MfeI	CAATTG	1 cut(s)	190
MflI	RGATCY	2 cut(s)	619, 1007
MhlI	GDGCHC	1 cut(s)	705
MluCI	AATT	4 cut(s)	190, 439, 448, 595
Mly113I	GGCGCC	1 cut(s)	990
MlyI	GAGTC	2 cut(s)	472, 932
MmeI	TCCRAC	4 cut(s)	256, 410, 543, 813
MroNI	GCCGGC	1 cut(s)	379
MseI	TTAA	1 cut(s)	852
MspI	CCGG	4 cut(s)	13, 380, 715, 899
MspR9I	CCNGG	2 cut(s)	690, 716
MunI	CAATTG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	690
MwoI	GCNNNNNNNGC	3 cut(s)	977, 989, 1019
NaeI	GCCGGC	1 cut(s)	381
NarI	GGCGCC	1 cut(s)	990
NciI	CCSGG	1 cut(s)	716
NcoI	CCATGG	1 cut(s)	236
NdeII	GATC	8 cut(s)	195, 300, 397, 453, 498, 591, 619, 1007
NgoMIV	GCCGGC	1 cut(s)	379
NlaIII	CATG	3 cut(s)	240, 463, 577
NlaIV	GGNNCC	5 cut(s)	384, 610, 621, 831, 991
NmuCI	GTSAC	2 cut(s)	61, 369
PciSI	GCTCTTC	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	2 cut(s)	282, 383
PdiI	GCCGGC	1 cut(s)	381
PfoI	TCCNGGA	2 cut(s)	688, 714
PkrI	GCNGC	2 cut(s)	883, 982
PleI	GAGTC	2 cut(s)	471, 931
PluTI	GGCGCC	1 cut(s)	993
PpsI	GAGTC	2 cut(s)	471, 931
PpuMI	RGGWCCY	2 cut(s)	479, 609
Psp5II	RGGWCCY	2 cut(s)	479, 609
Psp6I	CCWGG	1 cut(s)	688
PspGI	CCWGG	1 cut(s)	688
PspN4I	GGNNCC	5 cut(s)	384, 610, 621, 831, 991
PspPI	GGNCC	5 cut(s)	15, 212, 479, 609, 786
PspPPI	RGGWCCY	2 cut(s)	479, 609
PsrI	GAACNNNNNNTAC	2 cut(s)	870, 902
PsuI	RGATCY	2 cut(s)	619, 1007
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
Rsr2I	CGGWCCG	1 cut(s)	212
RsrII	CGGWCCG	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	852
SatI	GCNGC	2 cut(s)	882, 981
Sau3AI	GATC	8 cut(s)	195, 300, 397, 453, 498, 591, 619, 1007
Sau96I	GGNCC	5 cut(s)	15, 212, 479, 609, 786
SchI	GAGTC	2 cut(s)	472, 932
ScrFI	CCNGG	2 cut(s)	690, 716
SduI	GDGCHC	1 cut(s)	705
SfaNI	GCATC	2 cut(s)	638, 965
SfoI	GGCGCC	1 cut(s)	991
SinI	GGWCC	5 cut(s)	15, 212, 479, 609, 786
SmlI	CTYRAG	1 cut(s)	1000
SmoI	CTYRAG	1 cut(s)	1000
Sse9I	AATT	4 cut(s)	190, 439, 448, 595
SspDI	GGCGCC	1 cut(s)	989
SspMI	CTAG	3 cut(s)	329, 579, 756
StyD4I	CCNGG	2 cut(s)	688, 714
StyI	CCWWGG	3 cut(s)	236, 487, 663
TaaI	ACNGT	3 cut(s)	391, 782, 859
TaqI	TCGA	1 cut(s)	303
TaqII	GACCGA	1 cut(s)	355
TasI	AATT	4 cut(s)	190, 439, 448, 595
TauI	GCSGC	1 cut(s)	884
Tru1I	TTAA	1 cut(s)	852
Tru9I	TTAA	1 cut(s)	852
TseFI	GTSAC	2 cut(s)	61, 369
TseI	GCWGC	1 cut(s)	980
Tsp45I	GTSAC	2 cut(s)	61, 369
TspDTI	ATGAA	5 cut(s)	300, 522, 602, 674, 822
TspGWI	ACGGA	1 cut(s)	225
VpaK11BI	GGWCC	5 cut(s)	15, 212, 479, 609, 786
XspI	CTAG	3 cut(s)	329, 579, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.