Rroxscaffold_1G00013670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018291
Physical Location & Seq
Forward (+)
16872655 .. 16877731
5077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013670.1

Sequence Viewer

Length: 711 bp
ATGGTTCATTCCCCCTTTGAGGTCATCCCACAACCATTTGGGGTTGCTATCTCTGAACTAGGGTTTGTACGAGTCATCAGTCTGCCGTTTGAGCAGATCATATGCCCCACTCTTTCGGAGGTTAACGCCACTGGGCTTTGCTTGCCGTCGGATCAAAGCTGGTCGTTTCATAGATATTCTCAAGCTGTGGAATTTGCAAAAGGGATTGGTCTTAAGTTTTCGACCGTTGATTTGTCTGTGAAATTAGGTTCGAGCTGGTGGCTGTACCGGCCGGTTGTGGATGGAGGCATCCTTCGACTGCAGTGTATCCTACCTCCAGATAACTACAGTGAAGTGAGTGCGGTGGTGAGAACTTTGTTTATGAGTTCGAGTGTGGATAATATTGCTGGACACGAGATCTTTGATCTGTCTAGTGTCGAGAACCATGACTATGGTTCTATGCTTCGAAATCCACACGAAGGCATCAACGTCTCCACTTATCTTGCATTTGAAGAACTTCTCATCTTTGAAATCCAGAACCTTCCTCATGGCCATCGTCTCACCGATCTCATCGCCCTCGTCTTCACTCACCGATCTCATCGCCCCGATCTCATCGTCTCACAGATTTCCAGAACCTCTTTCTTTCTCCAATTGGATCCTCCCCTTCGATGGATTCCATGGTATGCTCTTCCTCTCCGCCCGCCATGGAAGGATGAAGGATCGATTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.67

Weight (kDa)

5.53

Isoelectric Point (pI)

52.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018291)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14104
fragaria_vesca FvH4_3g23710
malus_domestica MD05G1343100.v1.1
pyrus_communis pycom04g13220 pycom05g25750
rosa_chinensis RchiOBHm_Chr1g0313051
rosa_roxburghii Rroxscaffold_1G00013670
rosa_rugosa Rorug05G0384700
rosa_samantha Rh2CG490700 Rh6DG101600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 341, 676, 680
AclWI GGATC 4 cut(s) 159, 629, 642, 706
AcoI YGGCCR 2 cut(s) 269, 529
AcsI RAATTY 1 cut(s) 191
AfaI GTAC 2 cut(s) 69, 266
AfiI CCNNNNNNNGG 3 cut(s) 19, 458, 648
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 2 cut(s) 491, 509
AluBI AGCT 3 cut(s) 159, 185, 255
AluI AGCT 3 cut(s) 159, 185, 255
Alw26I GTCTC 3 cut(s) 475, 542, 601
AlwI GGATC 4 cut(s) 159, 629, 642, 706
AoxI GGCC 2 cut(s) 269, 529
ApoI RAATTY 1 cut(s) 191
ArsI GACNNNNNNTTYG 2 cut(s) 214, 246
AseI ATTAAT 1 cut(s) 705
Asp700I GAANNNNTTC 1 cut(s) 495
AsuHPI GGTGA 3 cut(s) 358, 532, 560
AsuII TTCGAA 1 cut(s) 445
BalI TGGCCA 1 cut(s) 531
BamHI GGATCC 1 cut(s) 634
BauI CACGAG 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 553
BccI CCATC 3 cut(s) 275, 540, 642
BceAI ACGGC 2 cut(s) 70, 130
BciVI GTATCC 1 cut(s) 317
BcoDI GTCTC 3 cut(s) 475, 542, 601
BfaI CTAG 2 cut(s) 59, 411
BfmI CTRYAG 2 cut(s) 299, 325
BfrI CTTAAG 1 cut(s) 212
BfuI GTATCC 1 cut(s) 317
BglII AGATCT 1 cut(s) 396
BmiI GGNNCC 1 cut(s) 636
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 2 cut(s) 297, 471
BmuI ACTGGG 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 553
BpmI CTGGAG 1 cut(s) 300
Bpu14I TTCGAA 1 cut(s) 445
BpuEI CTTGAG 1 cut(s) 165
Bsa29I ATCGAT 1 cut(s) 701
BsaJI CCNNGG 2 cut(s) 656, 683
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 458, 648
Bse118I RCCGGY 2 cut(s) 267, 271
Bse1I ACTGG 1 cut(s) 136
BseCI ATCGAT 1 cut(s) 701
BseDI CCNNGG 2 cut(s) 656, 683
BseGI GGATG 4 cut(s) 24, 286, 288, 697
BseLI CCNNNNNNNGG 3 cut(s) 19, 458, 648
BseNI ACTGG 1 cut(s) 136
BseX3I CGGCCG 1 cut(s) 269
Bsh1285I CGRYCG 2 cut(s) 225, 272
BshFI GGCC 2 cut(s) 271, 531
BshVI ATCGAT 1 cut(s) 701
BsiEI CGRYCG 2 cut(s) 225, 272
BsiSI CCGG 2 cut(s) 268, 272
BslI CCNNNNNNNGG 3 cut(s) 19, 458, 648
BsmAI GTCTC 3 cut(s) 475, 542, 601
BsmBI CGTCTC 3 cut(s) 475, 542, 601
BsnI GGCC 2 cut(s) 271, 531
Bsp119I TTCGAA 1 cut(s) 445
Bsp143I GATC 9 cut(s) 96, 151, 396, 403, 544, 572, 586, 634, 698
Bsp19I CCATGG 2 cut(s) 656, 683
BspACI CCGC 3 cut(s) 341, 676, 680
BspANI GGCC 2 cut(s) 271, 531
BspDI ATCGAT 1 cut(s) 701
BspLI GGNNCC 1 cut(s) 636
BspMAI CTGCAG 1 cut(s) 303
BspPI GGATC 4 cut(s) 159, 629, 642, 706
BspQI GCTCTTC 1 cut(s) 672
BspT104I TTCGAA 1 cut(s) 445
BspTI CTTAAG 1 cut(s) 212
BsrFI RCCGGY 2 cut(s) 267, 271
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 2 cut(s) 267, 271
BssECI CCNNGG 2 cut(s) 656, 683
BssMI GATC 9 cut(s) 96, 151, 396, 403, 544, 572, 586, 634, 698
BssSI CACGAG 1 cut(s) 392
BssT1I CCWWGG 2 cut(s) 656, 683
Bst2BI CACGAG 1 cut(s) 392
Bst4CI ACNGT 2 cut(s) 226, 329
Bst6I CTCTTC 1 cut(s) 672
BstAFI CTTAAG 1 cut(s) 212
BstBI TTCGAA 1 cut(s) 445
BstC8I GCNNGC 2 cut(s) 143, 680
BstDSI CCRYGG 2 cut(s) 656, 683
BstF5I GGATG 4 cut(s) 24, 286, 288, 697
BstKTI GATC 9 cut(s) 99, 154, 399, 406, 547, 575, 589, 637, 701
BstMAI GTCTC 3 cut(s) 475, 542, 601
BstMBI GATC 9 cut(s) 96, 151, 396, 403, 544, 572, 586, 634, 698
BstMCI CGRYCG 2 cut(s) 225, 272
BstMWI GCNNNNNNNGC 3 cut(s) 91, 142, 268
BstSFI CTRYAG 2 cut(s) 299, 325
BstV2I GAAGAC 1 cut(s) 553
BstX2I RGATCY 2 cut(s) 396, 634
BstXI CCANNNNNNTGG 1 cut(s) 431
BstYI RGATCY 2 cut(s) 396, 634
BstZI CGGCCG 1 cut(s) 269
Bsu15I ATCGAT 1 cut(s) 701
BsuI GTATCC 1 cut(s) 317
BsuRI GGCC 2 cut(s) 271, 531
BsuTUI ATCGAT 1 cut(s) 701
BtgI CCRYGG 2 cut(s) 656, 683
BtgZI GCGATG 2 cut(s) 535, 563
BtsCI GGATG 4 cut(s) 24, 286, 288, 697
BtsI GCAGTG 1 cut(s) 308
BtsIMutI CAGTG 3 cut(s) 129, 308, 334
Cac8I GCNNGC 2 cut(s) 143, 680
Cfr10I RCCGGY 2 cut(s) 267, 271
ClaI ATCGAT 1 cut(s) 701
Csp6I GTAC 2 cut(s) 68, 265
CspCI CAANNNNNGTGG 2 cut(s) 463, 498
CviAII CATG 4 cut(s) 425, 527, 657, 684
CviJI RGCY 7 cut(s) 136, 159, 185, 255, 262, 271, 531
CviKI_1 RGCY 7 cut(s) 136, 159, 185, 255, 262, 271, 531
CviQI GTAC 2 cut(s) 68, 265
DpnI GATC 9 cut(s) 98, 153, 398, 405, 546, 574, 588, 636, 700
DpnII GATC 9 cut(s) 96, 151, 396, 403, 544, 572, 586, 634, 698
EaeI YGGCCR 2 cut(s) 269, 529
EagI CGGCCG 1 cut(s) 269
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
EciI GGCGGA 1 cut(s) 665
EclXI CGGCCG 1 cut(s) 269
Eco130I CCWWGG 2 cut(s) 656, 683
Eco52I CGGCCG 1 cut(s) 269
EcoT14I CCWWGG 2 cut(s) 656, 683
ErhI CCWWGG 2 cut(s) 656, 683
Esp3I CGTCTC 3 cut(s) 475, 542, 601
FaeI CATG 4 cut(s) 428, 530, 660, 687
FatI CATG 4 cut(s) 424, 526, 656, 683
FauI CCCGC 1 cut(s) 687
FauNDI CATATG 1 cut(s) 101
FokI GGATG 4 cut(s) 11, 275, 293, 704
FspBI CTAG 2 cut(s) 59, 411
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 2 cut(s) 271, 531
HapII CCGG 2 cut(s) 268, 272
Hin1II CATG 4 cut(s) 428, 530, 660, 687
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 2 cut(s) 72, 652
HpaI GTTAAC 1 cut(s) 124
HpaII CCGG 2 cut(s) 268, 272
HphI GGTGA 3 cut(s) 358, 532, 560
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 55, 118, 151
Hpy188III TCNNGA 4 cut(s) 317, 418, 514, 609
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 1 cut(s) 151
HpyAV CCTTC 6 cut(s) 302, 452, 530, 653, 682, 689
HpyCH4III ACNGT 2 cut(s) 226, 329
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 3 cut(s) 197, 301, 485
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 142, 268
HpySE526I ACGT 1 cut(s) 468
Hsp92II CATG 4 cut(s) 428, 530, 660, 687
KspAI GTTAAC 1 cut(s) 124
Kzo9I GATC 9 cut(s) 96, 151, 396, 403, 544, 572, 586, 634, 698
LguI GCTCTTC 1 cut(s) 672
LpnPI CCDG 9 cut(s) 117, 145, 241, 281, 285, 330, 372, 527, 622
LweI GCATC 2 cut(s) 297, 471
MaeI CTAG 2 cut(s) 59, 411
MaeII ACGT 1 cut(s) 468
MalI GATC 9 cut(s) 98, 153, 398, 405, 546, 574, 588, 636, 700
MboI GATC 9 cut(s) 96, 151, 396, 403, 544, 572, 586, 634, 698
MboII GAAGA 3 cut(s) 503, 553, 659
MfeI CAATTG 1 cut(s) 629
MflI RGATCY 2 cut(s) 396, 634
MlsI TGGCCA 1 cut(s) 531
MluCI AATT 4 cut(s) 191, 242, 629, 706
MluNI TGGCCA 1 cut(s) 531
MlyI GAGTC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 9 cut(s) 13, 112, 278, 324, 534, 566, 625, 648, 681
Mox20I TGGCCA 1 cut(s) 531
MroXI GAANNNNTTC 1 cut(s) 495
MscI TGGCCA 1 cut(s) 531
MseI TTAA 3 cut(s) 123, 213, 705
MslI CAYNNNNRTG 1 cut(s) 429
Msp20I TGGCCA 1 cut(s) 531
MspCI CTTAAG 1 cut(s) 212
MspI CCGG 2 cut(s) 268, 272
MunI CAATTG 1 cut(s) 629
MwoI GCNNNNNNNGC 3 cut(s) 91, 142, 268
NcoI CCATGG 2 cut(s) 656, 683
NdeI CATATG 1 cut(s) 101
NdeII GATC 9 cut(s) 96, 151, 396, 403, 544, 572, 586, 634, 698
NlaIII CATG 4 cut(s) 428, 530, 660, 687
NlaIV GGNNCC 1 cut(s) 636
NspV TTCGAA 1 cut(s) 445
PciSI GCTCTTC 1 cut(s) 672
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 1 cut(s) 652
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PshBI ATTAAT 1 cut(s) 705
PspN4I GGNNCC 1 cut(s) 636
PstI CTGCAG 1 cut(s) 303
PsuI RGATCY 2 cut(s) 396, 634
RsaI GTAC 2 cut(s) 69, 266
RsaNI GTAC 2 cut(s) 68, 265
RseI CAYNNNNRTG 1 cut(s) 429
SapI GCTCTTC 1 cut(s) 672
SaqAI TTAA 3 cut(s) 123, 213, 705
Sau3AI GATC 9 cut(s) 96, 151, 396, 403, 544, 572, 586, 634, 698
SchI GAGTC 1 cut(s) 81
SfaNI GCATC 2 cut(s) 297, 471
SfcI CTRYAG 2 cut(s) 299, 325
SfuI TTCGAA 1 cut(s) 445
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 2 cut(s) 180, 212
SmoI CTYRAG 2 cut(s) 180, 212
Sse9I AATT 4 cut(s) 191, 242, 629, 706
SsiI CCGC 3 cut(s) 341, 676, 680
SspI AATATT 1 cut(s) 382
SspMI CTAG 2 cut(s) 59, 411
StyI CCWWGG 2 cut(s) 656, 683
TaaI ACNGT 2 cut(s) 226, 329
TaiI ACGT 1 cut(s) 471
TaqI TCGA 8 cut(s) 221, 251, 295, 368, 417, 445, 646, 701
TasI AATT 4 cut(s) 191, 242, 629, 706
TfiI GAWTC 1 cut(s) 652
Tru1I TTAA 3 cut(s) 123, 213, 705
Tru9I TTAA 3 cut(s) 123, 213, 705
TscAI CASTG 3 cut(s) 136, 308, 334
TspDTI ATGAA 2 cut(s) 158, 708
TspRI CASTG 3 cut(s) 136, 308, 334
Vha464I CTTAAG 1 cut(s) 212
VspI ATTAAT 1 cut(s) 705
XapI RAATTY 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 2 cut(s) 59, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.