FvH4_3g23710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018291
Physical Location & Seq
Reverse (-)
16796467 .. 16797865
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23710.t1

Sequence Viewer

Length: 789 bp
ATGGGCGAGGAGTTGAGGTGGTGGGTGGATCTGGACTTGAGGAAAGAGAGGAACTCATCTAGACAAGGACCTTTTGTTCCAGAGGCTATTAGGCTCAGAGCCAAGTGGAGGGAAAGCGGGGAGAACACCATGTTCTTGCCCTTGAATTCAGTCAGAAACAGTTGCTTGGTAAACTCTAGAGCGACGTTGGTTTGGCTGGTGATAGCTTCTTTGGAATCCATCGTTGTAAACAAGGACGGTAGGGGTGGGGTAGGGGTGGCTCAGGCCTTGAGTTATGCTGATGTTGATCACAAACGGAGTCTGCGTCCTCACGCCGTCAACTTCTCTCTCGACTTCGACCTAGGAGCTTCTAGATTCTTCAAGAAGCCAATGGTTCCTGCCACCTTCGAGGTCCCACAAACATTCGCGGCTGCTCTCTTAGGGCTAGGGTTTGTACGAGTCACCAGTTTGCCCTTCGAGCAGATCATATGCCCTACTCTTTCGAAGGTTAACGCCGCCGCCCTTTGCTTGCCGTCGGATAGAAGCTGGTCGTTTCATAATTCTCAAGCTGTGGAATTTGCAAAAGGGATTAGTCTCAAGTTTTCGACCGTTGATTTGTCTGTGAAACAAGGAACGAGCTGGTGTCTCTACCGGTGGTGGATGGAGGCATCTTCCGGCTGCGGTGTATTATACCTGAAGATAACTACAGTAAATATCGAGAACCATGGCTATGGTTCTCTGCTTCGAAATCCATTTGAGGACATCAACGTCTCCACTTATCTTGCATTTGAAGAAGTTTCTGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

263

Amino Acids

29.33

Weight (kDa)

8.59

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018291)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14104
fragaria_vesca FvH4_3g23710
malus_domestica MD05G1343100.v1.1
pyrus_communis pycom04g13220 pycom05g25750
rosa_chinensis RchiOBHm_Chr1g0313051
rosa_roxburghii Rroxscaffold_1G00013670
rosa_rugosa Rorug05G0384700
rosa_samantha Rh2CG490700 Rh6DG101600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 746
AccII CGCG 1 cut(s) 407
AciI CCGC 5 cut(s) 117, 407, 495, 498, 660
AclWI GGATC 1 cut(s) 36
AcsI RAATTY 2 cut(s) 145, 554
AcuI CTGAAG 1 cut(s) 695
AfaI GTAC 1 cut(s) 435
AfiI CCNNNNNNNGG 1 cut(s) 108
AgeI ACCGGT 1 cut(s) 630
AgsI TTSAA 3 cut(s) 145, 361, 770
AloI GAACNNNNNNTCC 2 cut(s) 60, 92
AluBI AGCT 5 cut(s) 206, 347, 525, 548, 618
AluI AGCT 5 cut(s) 206, 347, 525, 548, 618
Alw26I GTCTC 3 cut(s) 578, 629, 754
AlwI GGATC 1 cut(s) 36
AoxI GGCC 1 cut(s) 264
ApeKI GCWGC 2 cut(s) 410, 657
ApoI RAATTY 2 cut(s) 145, 554
ArsI GACNNNNNNTTYG 2 cut(s) 577, 609
AsiGI ACCGGT 1 cut(s) 630
AspA2I CCTAGG 1 cut(s) 340
AspS9I GGNCC 2 cut(s) 68, 391
AsuHPI GGTGA 2 cut(s) 211, 433
AsuII TTCGAA 2 cut(s) 482, 724
AvaII GGWCC 2 cut(s) 68, 391
AvrII CCTAGG 1 cut(s) 340
BbvI GCAGC 2 cut(s) 397, 644
BccI CCATC 2 cut(s) 227, 634
BceAI ACGGC 2 cut(s) 299, 496
BclI TGATCA 1 cut(s) 286
BcoDI GTCTC 3 cut(s) 578, 629, 754
BfaI CTAG 5 cut(s) 60, 177, 341, 351, 425
BfmI CTRYAG 1 cut(s) 684
BisI GCNGC 5 cut(s) 408, 411, 495, 498, 658
BlnI CCTAGG 1 cut(s) 340
BlsI GCNGC 5 cut(s) 409, 412, 496, 499, 659
Bme18I GGWCC 2 cut(s) 68, 391
BmgT120I GGNCC 2 cut(s) 68, 391
BmiI GGNNCC 2 cut(s) 375, 393
BmsI GCATC 1 cut(s) 656
BplI GAGNNNNNCTC 2 cut(s) 38, 70
Bpu10I CCTNAGC 1 cut(s) 261
Bpu14I TTCGAA 2 cut(s) 482, 724
BpuEI CTTGAG 4 cut(s) 58, 289, 528, 560
BsaBI GATNNNNATC 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 340, 703
BsaWI WCCGGW 1 cut(s) 630
BsaXI ACNNNNNCTCC 3 cut(s) 32, 289, 319
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse118I RCCGGY 1 cut(s) 630
Bse1I ACTGG 1 cut(s) 444
Bse8I GATNNNNATC 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 340, 703
BseGI GGATG 1 cut(s) 645
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 3 cut(s) 109, 275, 771
BseNI ACTGG 1 cut(s) 444
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 2 cut(s) 397, 644
Bsh1236I CGCG 1 cut(s) 407
Bsh1285I CGRYCG 1 cut(s) 588
BshFI GGCC 1 cut(s) 266
BshTI ACCGGT 1 cut(s) 630
BsiEI CGRYCG 1 cut(s) 588
BsiSI CCGG 2 cut(s) 631, 654
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 3 cut(s) 578, 629, 754
BsmBI CGTCTC 1 cut(s) 754
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 1 cut(s) 266
Bsp119I TTCGAA 2 cut(s) 482, 724
Bsp143I GATC 3 cut(s) 28, 286, 462
Bsp19I CCATGG 1 cut(s) 703
BspACI CCGC 5 cut(s) 117, 407, 495, 498, 660
BspANI GGCC 1 cut(s) 266
BspCNI CTCAG 3 cut(s) 108, 274, 772
BspFNI CGCG 1 cut(s) 407
BspLI GGNNCC 2 cut(s) 375, 393
BspPI GGATC 1 cut(s) 36
BspT104I TTCGAA 2 cut(s) 482, 724
BsrFI RCCGGY 1 cut(s) 630
BsrI ACTGG 1 cut(s) 444
BssAI RCCGGY 1 cut(s) 630
BssECI CCNNGG 2 cut(s) 340, 703
BssMI GATC 3 cut(s) 28, 286, 462
BssT1I CCWWGG 2 cut(s) 340, 703
Bst4CI ACNGT 4 cut(s) 161, 239, 589, 688
BstBI TTCGAA 2 cut(s) 482, 724
BstC8I GCNNGC 1 cut(s) 509
BstDEI CTNAG 4 cut(s) 95, 261, 418, 780
BstDSI CCRYGG 1 cut(s) 703
BstF5I GGATG 1 cut(s) 645
BstFNI CGCG 1 cut(s) 407
BstKTI GATC 3 cut(s) 31, 289, 465
BstMAI GTCTC 3 cut(s) 578, 629, 754
BstMBI GATC 3 cut(s) 28, 286, 462
BstMCI CGRYCG 1 cut(s) 588
BstMWI GCNNNNNNNGC 1 cut(s) 457
BstSFI CTRYAG 1 cut(s) 684
BstUI CGCG 1 cut(s) 407
BstV1I GCAGC 2 cut(s) 397, 644
BstX2I RGATCY 1 cut(s) 28
BstXI CCANNNNNNTGG 1 cut(s) 710
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 1 cut(s) 266
BtgI CCRYGG 1 cut(s) 703
BtsCI GGATG 1 cut(s) 645
Cac8I GCNNGC 1 cut(s) 509
Cfr10I RCCGGY 1 cut(s) 630
Cfr13I GGNCC 2 cut(s) 68, 391
CseI GACGC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 434
CspAI ACCGGT 1 cut(s) 630
CspCI CAANNNNNGTGG 2 cut(s) 742, 777
CviAII CATG 2 cut(s) 130, 704
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 4 cut(s) 95, 261, 418, 780
DpnI GATC 3 cut(s) 30, 288, 464
DpnII GATC 3 cut(s) 28, 286, 462
DrdI GACNNNNNNGTC 1 cut(s) 746
DseDI GACNNNNNNGTC 1 cut(s) 746
Eco130I CCWWGG 2 cut(s) 340, 703
Eco147I AGGCCT 1 cut(s) 266
Eco47I GGWCC 2 cut(s) 68, 391
Eco57I CTGAAG 1 cut(s) 695
EcoO109I RGGNCCY 2 cut(s) 68, 391
EcoRI GAATTC 1 cut(s) 145
EcoT14I CCWWGG 2 cut(s) 340, 703
ErhI CCWWGG 2 cut(s) 340, 703
Esp3I CGTCTC 1 cut(s) 754
FaeI CATG 2 cut(s) 133, 707
FaiI YATR 8 cut(s) 131, 276, 467, 469, 537, 670, 705, 711
FaqI GGGAC 1 cut(s) 377
FatI CATG 2 cut(s) 129, 703
FauI CCCGC 1 cut(s) 110
FauNDI CATATG 1 cut(s) 467
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 5 cut(s) 408, 411, 495, 498, 658
FokI GGATG 1 cut(s) 652
Fsp4HI GCNGC 5 cut(s) 408, 411, 495, 498, 658
FspBI CTAG 5 cut(s) 60, 177, 341, 351, 425
GluI GCNGC 5 cut(s) 408, 411, 495, 498, 658
HaeIII GGCC 1 cut(s) 266
HapII CCGG 2 cut(s) 631, 654
HgaI GACGC 1 cut(s) 293
Hin1II CATG 2 cut(s) 133, 707
HincII GTYRAC 2 cut(s) 319, 490
HindII GTYRAC 2 cut(s) 319, 490
HinfI GANTC 4 cut(s) 215, 298, 354, 438
HpaI GTTAAC 1 cut(s) 490
HpaII CCGG 2 cut(s) 631, 654
HphI GGTGA 2 cut(s) 211, 433
Hpy166II GTNNAC 4 cut(s) 172, 229, 319, 490
Hpy188I TCNGA 4 cut(s) 98, 155, 517, 781
Hpy188III TCNNGA 8 cut(s) 32, 60, 80, 177, 329, 351, 361, 697
Hpy8I GTNNAC 4 cut(s) 172, 229, 319, 490
Hpy99I CGWCG 2 cut(s) 187, 517
HpyAV CCTTC 3 cut(s) 394, 463, 478
HpyCH4III ACNGT 4 cut(s) 161, 239, 589, 688
HpyCH4IV ACGT 2 cut(s) 185, 747
HpyCH4V TGCA 2 cut(s) 560, 764
HpyF10VI GCNNNNNNNGC 1 cut(s) 457
HpyF3I CTNAG 4 cut(s) 95, 261, 418, 780
HpySE526I ACGT 2 cut(s) 185, 747
Hsp92II CATG 2 cut(s) 133, 707
Ksp22I TGATCA 1 cut(s) 286
KspAI GTTAAC 1 cut(s) 490
Kzo9I GATC 3 cut(s) 28, 286, 462
LmnI GCTCC 1 cut(s) 344
Lsp1109I GCAGC 2 cut(s) 397, 644
LweI GCATC 1 cut(s) 656
MaeI CTAG 5 cut(s) 60, 177, 341, 351, 425
MaeII ACGT 2 cut(s) 185, 747
MaeIII GTNAC 1 cut(s) 439
MalI GATC 3 cut(s) 30, 288, 464
MboI GATC 3 cut(s) 28, 286, 462
MboII GAAGA 4 cut(s) 349, 642, 688, 782
MflI RGATCY 1 cut(s) 28
MluCI AATT 3 cut(s) 145, 538, 554
MlyI GAGTC 2 cut(s) 307, 447
MmeI TCCRAC 1 cut(s) 495
MnlI CCTC 9 cut(s) 9, 33, 42, 76, 102, 318, 382, 637, 730
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 1 cut(s) 708
MspI CCGG 2 cut(s) 631, 654
MvnI CGCG 1 cut(s) 407
MwoI GCNNNNNNNGC 1 cut(s) 457
NcoI CCATGG 1 cut(s) 703
NdeI CATATG 1 cut(s) 467
NdeII GATC 3 cut(s) 28, 286, 462
NlaIII CATG 2 cut(s) 133, 707
NlaIV GGNNCC 2 cut(s) 375, 393
NmuCI GTSAC 1 cut(s) 439
NspV TTCGAA 2 cut(s) 482, 724
PceI AGGCCT 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PfeI GAWTC 2 cut(s) 215, 354
PinAI ACCGGT 1 cut(s) 630
PkrI GCNGC 5 cut(s) 409, 412, 496, 499, 659
PleI GAGTC 2 cut(s) 306, 446
PpsI GAGTC 2 cut(s) 306, 446
PpuMI RGGWCCY 2 cut(s) 68, 391
Psp5II RGGWCCY 2 cut(s) 68, 391
PspN4I GGNNCC 2 cut(s) 375, 393
PspPI GGNCC 2 cut(s) 68, 391
PspPPI RGGWCCY 2 cut(s) 68, 391
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
RseI CAYNNNNRTG 1 cut(s) 708
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 5 cut(s) 408, 411, 495, 498, 658
Sau3AI GATC 3 cut(s) 28, 286, 462
Sau96I GGNCC 2 cut(s) 68, 391
SchI GAGTC 2 cut(s) 307, 447
SfaNI GCATC 1 cut(s) 656
SfcI CTRYAG 1 cut(s) 684
SfuI TTCGAA 2 cut(s) 482, 724
SinI GGWCC 2 cut(s) 68, 391
SmiMI CAYNNNNRTG 1 cut(s) 708
SmlI CTYRAG 4 cut(s) 37, 268, 543, 575
SmoI CTYRAG 4 cut(s) 37, 268, 543, 575
Sse9I AATT 3 cut(s) 145, 538, 554
SseBI AGGCCT 1 cut(s) 266
SsiI CCGC 5 cut(s) 117, 407, 495, 498, 660
SspMI CTAG 5 cut(s) 60, 177, 341, 351, 425
StuI AGGCCT 1 cut(s) 266
StyI CCWWGG 2 cut(s) 340, 703
TaaI ACNGT 4 cut(s) 161, 239, 589, 688
TaiI ACGT 2 cut(s) 188, 750
TaqI TCGA 8 cut(s) 330, 336, 387, 456, 482, 584, 696, 724
TasI AATT 3 cut(s) 145, 538, 554
TauI GCSGC 3 cut(s) 410, 497, 500
TfiI GAWTC 2 cut(s) 215, 354
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 2 cut(s) 410, 657
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 1 cut(s) 524
TspGWI ACGGA 1 cut(s) 310
VpaK11BI GGWCC 2 cut(s) 68, 391
XapI RAATTY 2 cut(s) 145, 554
XbaI TCTAGA 3 cut(s) 59, 176, 350
XmaJI CCTAGG 1 cut(s) 340
XspI CTAG 5 cut(s) 60, 177, 341, 351, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.