Rorug05G0384700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0018291
Physical Location & Seq
Forward (+)
52243176 .. 52244564
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0384700.1

Sequence Viewer

Length: 1266 bp
ATGGCTTCTCTTGAGGAAGTTACTGCAAGCTTCCAAGCATCTCTTGCCCTAGCAGGAGATGATGTAGTTGATATCACTATGCTGTCACGTGGCAAACCTAGAAGAAATTCTCAAGCCTACTTGTTGGGAAGATCCCTATCTCCCAAGCCTGTGGAAATCAATGATCTTCGTCGTCACTTTCGTAGGATTTGGGTGGTGGAAAAAAGCTTCAAAATTCAAGAGAGATCAAACTCCCTTTTCCTCTTCTCTTTTGATCACCGTGGCGACCTGCGCAAGGTGATTAGGGGAGGGCCTTGGAATTATGCTCGAGCTCCAATGGTGTTGATGGAATATGATAGTGTAACACCAGTTGAGAAGATCCCTCTGAACCTACTTTACTATTGGGTACGTATCACTAATATCCCTCCTGCTTATGAGAAAAAAGAAACTATCATGGATATTGCTACTGTGGCTGGCCATCCCCTTGAACTTGATGACAGGCTTTTTAACAACAAAGGGGAGATTAGGGTTAGGGTTAGCCATAATATCCTGAAACCAATTTTTTTGGAGAAAAAGCTGAAAATTGATGATGGGGTTGAAGAGGTAATCCATTACAATTTTGACAATCTCTTTGGACGTTGTGAGGATTGCTTGTTGGTCTTCCATCCTACAGGTTCGTGTCCTGCTGCAGGAAAGAATAAAAACACGACTGTGGTGCAACCTCATGTACCAAAAATTGAATTTCTGACTAGGAATTTTCTGGTTGATGGCATGCCATTTACTTTTAAATCCTCTATTCCAACTGCTGTTACTATATCACCTTTTGTGAATCTGAAAGATACAGGGGCTCGTAAGGCCAAAAGGTCTATTGTGCTTCGTGAGCCTGACACAAGAAAAGATAATGATTTAGCTATTGTGCCTGTTGAAGATCCATTTCCCAGCAAGAGAGGTAGGCGTACTCCTACCCCTTCACCTCAGAAAGTTCAAATCCCAATTCTGATTGATGAAAACAGAGGACAAGTGGCTCAACCAAAGAAGCTCAAGATGCCTGAATTCACCACCAAATTTACTGCAAAATCTTTGGGGCTTCAGGAAACTCCAGGAGGTTTAATGGTGCTAGTCGAGGCTACAGAGACAAAGAAGAAAAGGGGGCGTCCTCTTGGAGCCCGAAATAAAAATCCATCAAAGACCAAGATTGAAAAGAAACCTGCTTCTCCATTGTGTCTCACCGATTCACCATGTTCCTCTAGCCCGTCGGGTAAGGGCAAGGGGAAAGGGATTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

421

Amino Acids

47.26

Weight (kDa)

9.75

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 39 - 113 3.2e-12 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018291)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14104
fragaria_vesca FvH4_3g23710
malus_domestica MD05G1343100.v1.1
pyrus_communis pycom04g13220 pycom05g25750
rosa_chinensis RchiOBHm_Chr1g0313051
rosa_roxburghii Rroxscaffold_1G00013670
rosa_rugosa Rorug05G0384700
rosa_samantha Rh2CG490700 Rh6DG101600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 272
Acc36I ACCTGC 2 cut(s) 276, 1195
AclWI GGATC 3 cut(s) 126, 352, 902
AcoI YGGCCR 1 cut(s) 454
AcsI RAATTY 6 cut(s) 106, 213, 719, 733, 1031, 1043
AcuI CTGAAG 1 cut(s) 1052
AcvI CACGTG 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 1132
AfaI GTAC 3 cut(s) 387, 708, 937
AfiI CCNNNNNNNGG 2 cut(s) 274, 668
AgsI TTSAA 8 cut(s) 211, 218, 467, 578, 719, 905, 965, 1178
AjnI CCWGG 1 cut(s) 1078
AleI CACNNNNGTG 1 cut(s) 689
AluBI AGCT 6 cut(s) 30, 207, 311, 556, 890, 1018
AluI AGCT 6 cut(s) 30, 207, 311, 556, 890, 1018
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 2 cut(s) 1106, 1208
AlwI GGATC 3 cut(s) 126, 352, 902
Ama87I CYCGRG 1 cut(s) 306
AoxI GGCC 3 cut(s) 290, 454, 834
ApeKI GCWGC 1 cut(s) 665
ApoI RAATTY 6 cut(s) 106, 213, 719, 733, 1031, 1043
ArsI GACNNNNNNTTYG 2 cut(s) 593, 625
Asp700I GAANNNNTTC 1 cut(s) 106
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 290
AsuHPI GGTGA 7 cut(s) 248, 289, 789, 942, 1027, 1198, 1206
AvaI CYCGRG 1 cut(s) 306
BalI TGGCCA 1 cut(s) 456
BanII GRGCYC 3 cut(s) 313, 829, 1147
BbrPI CACGTG 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 631
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 1 cut(s) 652
BccI CCATC 6 cut(s) 319, 465, 563, 651, 740, 1168
BcgI CGANNNNNNTGC 2 cut(s) 676, 710
BciT130I CCWGG 1 cut(s) 1080
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 1106, 1208
BfaI CTAG 5 cut(s) 50, 99, 729, 1097, 1227
BfmI CTRYAG 3 cut(s) 648, 666, 1107
BfuAI ACCTGC 2 cut(s) 276, 1195
BisI GCNGC 1 cut(s) 666
BlsI GCNGC 1 cut(s) 667
Bme1390I CCNGG 1 cut(s) 1080
BmeT110I CYCGRG 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 1144
BmrFI CCNGG 1 cut(s) 1080
BmsI GCATC 2 cut(s) 47, 1014
BpiI GAAGAC 1 cut(s) 631
BpmI CTGGAG 1 cut(s) 1062
BpuEI CTTGAG 3 cut(s) 32, 96, 1004
BsaAI YACGTR 2 cut(s) 89, 389
BsaBI GATNNNNATC 1 cut(s) 136
BsaHI GRCGYC 1 cut(s) 1132
BsaJI CCNNGG 2 cut(s) 259, 293
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 668
Bse1I ACTGG 1 cut(s) 347
Bse8I GATNNNNATC 1 cut(s) 136
BseBI CCWGG 1 cut(s) 1080
BseDI CCNNGG 2 cut(s) 259, 293
BseGI GGATG 2 cut(s) 457, 643
BseJI GATNNNNATC 1 cut(s) 136
BseLI CCNNNNNNNGG 2 cut(s) 274, 668
BseMII CTCAG 1 cut(s) 968
BseNI ACTGG 1 cut(s) 347
BseXI GCAGC 1 cut(s) 652
BseYI CCCAGC 1 cut(s) 917
BshFI GGCC 3 cut(s) 292, 456, 836
BsiHKAI GWGCWC 1 cut(s) 313
BsiHKCI CYCGRG 1 cut(s) 306
BslI CCNNNNNNNGG 2 cut(s) 274, 668
BsmAI GTCTC 2 cut(s) 1106, 1208
BsnI GGCC 3 cut(s) 292, 456, 836
BsoBI CYCGRG 1 cut(s) 306
Bsp1286I GDGCHC 3 cut(s) 313, 829, 1147
Bsp143I GATC 6 cut(s) 131, 163, 224, 253, 357, 907
BspANI GGCC 3 cut(s) 292, 456, 836
BspCNI CTCAG 1 cut(s) 967
BspLI GGNNCC 1 cut(s) 1144
BspMAI CTGCAG 1 cut(s) 670
BspMI ACCTGC 2 cut(s) 276, 1195
BspPI GGATC 3 cut(s) 126, 352, 902
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 2 cut(s) 259, 293
BssMI GATC 6 cut(s) 131, 163, 224, 253, 357, 907
BssNI GRCGYC 1 cut(s) 1132
BssT1I CCWWGG 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 1080
Bst4CI ACNGT 3 cut(s) 260, 448, 691
Bst6I CTCTTC 2 cut(s) 248, 573
BstACI GRCGYC 1 cut(s) 1132
BstAPI GCANNNNNTGC 1 cut(s) 44
BstBAI YACGTR 2 cut(s) 89, 389
BstC8I GCNNGC 3 cut(s) 28, 454, 752
BstDEI CTNAG 1 cut(s) 954
BstDSI CCRYGG 1 cut(s) 259
BstENI CCTNNNNNAGG 2 cut(s) 272, 666
BstF5I GGATG 2 cut(s) 457, 643
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 6 cut(s) 134, 166, 227, 256, 360, 910
BstMAI GTCTC 2 cut(s) 1106, 1208
BstMBI GATC 6 cut(s) 131, 163, 224, 253, 357, 907
BstMWI GCNNNNNNNGC 6 cut(s) 44, 270, 449, 833, 859, 1024
BstNI CCWGG 1 cut(s) 1080
BstNSI RCATGY 1 cut(s) 754
BstSCI CCNGG 1 cut(s) 1078
BstSFI CTRYAG 3 cut(s) 648, 666, 1107
BstSNI TACGTA 1 cut(s) 389
BstV1I GCAGC 1 cut(s) 652
BstV2I GAAGAC 1 cut(s) 631
BstX2I RGATCY 3 cut(s) 131, 357, 907
BstXI CCANNNNNNTGG 1 cut(s) 151
BstYI RGATCY 3 cut(s) 131, 357, 907
BsuRI GGCC 3 cut(s) 292, 456, 836
BtgI CCRYGG 1 cut(s) 259
BtsCI GGATG 2 cut(s) 457, 643
BveI ACCTGC 2 cut(s) 276, 1195
Cac8I GCNNGC 3 cut(s) 28, 454, 752
CfoI GCGC 1 cut(s) 273
Cfr13I GGNCC 1 cut(s) 290
CseI GACGC 1 cut(s) 1121
Csp6I GTAC 3 cut(s) 386, 707, 936
CviAII CATG 4 cut(s) 433, 704, 751, 1218
CviQI GTAC 3 cut(s) 386, 707, 936
DdeI CTNAG 1 cut(s) 954
DpnI GATC 6 cut(s) 133, 165, 226, 255, 359, 909
DpnII GATC 6 cut(s) 131, 163, 224, 253, 357, 907
DraI TTTAAA 1 cut(s) 766
EaeI YGGCCR 1 cut(s) 454
Eam1104I CTCTTC 2 cut(s) 248, 573
EarI CTCTTC 2 cut(s) 248, 573
Ecl136II GAGCTC 1 cut(s) 311
Eco105I TACGTA 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 293
Eco24I GRGCYC 3 cut(s) 313, 829, 1147
Eco32I GATATC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 1052
Eco72I CACGTG 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 306
EcoICRI GAGCTC 1 cut(s) 311
EcoNI CCTNNNNNAGG 2 cut(s) 272, 666
EcoO109I RGGNCCY 1 cut(s) 290
EcoRI GAATTC 1 cut(s) 1031
EcoRII CCWGG 1 cut(s) 1078
EcoRV GATATC 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 293
EcoT38I GRGCYC 3 cut(s) 313, 829, 1147
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 4 cut(s) 436, 707, 754, 1221
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 4 cut(s) 432, 703, 750, 1217
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 666
FokI GGATG 2 cut(s) 444, 630
FriOI GRGCYC 3 cut(s) 313, 829, 1147
Fsp4HI GCNGC 1 cut(s) 666
FspBI CTAG 5 cut(s) 50, 99, 729, 1097, 1227
FspI TGCGCA 1 cut(s) 272
GlaI GCGC 1 cut(s) 272
GluI GCNGC 1 cut(s) 666
GsaI CCCAGC 1 cut(s) 921
GsuI CTGGAG 1 cut(s) 1062
HaeIII GGCC 3 cut(s) 292, 456, 836
HgaI GACGC 1 cut(s) 1121
HhaI GCGC 1 cut(s) 273
Hin1I GRCGYC 1 cut(s) 1132
Hin1II CATG 4 cut(s) 436, 707, 754, 1221
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HindIII AAGCTT 2 cut(s) 28, 205
HinfI GANTC 2 cut(s) 808, 1211
HphI GGTGA 7 cut(s) 248, 289, 789, 942, 1027, 1198, 1206
Hpy188I TCNGA 5 cut(s) 366, 726, 813, 957, 978
Hpy188III TCNNGA 6 cut(s) 11, 218, 529, 857, 1021, 1070
Hpy99I CGWCG 2 cut(s) 174, 1237
HpyAV CCTTC 1 cut(s) 957
HpyCH4III ACNGT 3 cut(s) 260, 448, 691
HpyCH4IV ACGT 3 cut(s) 88, 388, 616
HpyCH4V TGCA 4 cut(s) 26, 668, 697, 1052
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 270, 449, 833, 859, 1024
HpyF3I CTNAG 1 cut(s) 954
HpySE526I ACGT 3 cut(s) 88, 388, 616
Hsp92I GRCGYC 1 cut(s) 1132
Hsp92II CATG 4 cut(s) 436, 707, 754, 1221
HspAI GCGC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 6 cut(s) 131, 163, 224, 253, 357, 907
LmnI GCTCC 2 cut(s) 316, 1142
Lsp1109I GCAGC 1 cut(s) 652
LweI GCATC 2 cut(s) 47, 1014
MaeI CTAG 5 cut(s) 50, 99, 729, 1097, 1227
MaeII ACGT 3 cut(s) 88, 388, 616
MaeIII GTNAC 5 cut(s) 19, 84, 173, 340, 787
MalI GATC 6 cut(s) 133, 165, 226, 255, 359, 909
MboI GATC 6 cut(s) 131, 163, 224, 253, 357, 907
MboII GAAGA 9 cut(s) 114, 141, 158, 235, 367, 590, 631, 917, 1132
MflI RGATCY 3 cut(s) 131, 357, 907
MhlI GDGCHC 3 cut(s) 313, 829, 1147
MlsI TGGCCA 1 cut(s) 456
MluNI TGGCCA 1 cut(s) 456
MmeI TCCRAC 1 cut(s) 803
Mox20I TGGCCA 1 cut(s) 456
MroXI GAANNNNTTC 1 cut(s) 106
MscI TGGCCA 1 cut(s) 456
MseI TTAA 3 cut(s) 486, 765, 1088
MslI CAYNNNNRTG 1 cut(s) 689
Msp20I TGGCCA 1 cut(s) 456
MspR9I CCNGG 1 cut(s) 1080
MvaI CCWGG 1 cut(s) 1080
MwoI GCNNNNNNNGC 6 cut(s) 44, 270, 449, 833, 859, 1024
NdeII GATC 6 cut(s) 131, 163, 224, 253, 357, 907
NlaIII CATG 4 cut(s) 436, 707, 754, 1221
NlaIV GGNNCC 1 cut(s) 1144
NmuCI GTSAC 2 cut(s) 84, 173
NsbI TGCGCA 1 cut(s) 272
NspI RCATGY 1 cut(s) 754
OliI CACNNNNGTG 1 cut(s) 689
PaeI GCATGC 1 cut(s) 754
PaeR7I CTCGAG 1 cut(s) 306
PcsI WCGNNNNNNNCGW 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 808, 1211
PfoI TCCNGGA 1 cut(s) 1078
PkrI GCNGC 1 cut(s) 667
PmaCI CACGTG 1 cut(s) 89
PmlI CACGTG 1 cut(s) 89
Ppu21I YACGTR 2 cut(s) 89, 389
Psp124BI GAGCTC 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 1078
PspCI CACGTG 1 cut(s) 89
PspFI CCCAGC 1 cut(s) 917
PspGI CCWGG 1 cut(s) 1078
PspN4I GGNNCC 1 cut(s) 1144
PspPI GGNCC 1 cut(s) 290
PspXI VCTCGAGB 1 cut(s) 306
PsrI GAACNNNNNNTAC 2 cut(s) 359, 391
PstI CTGCAG 1 cut(s) 670
PsuI RGATCY 3 cut(s) 131, 357, 907
RsaI GTAC 3 cut(s) 387, 708, 937
RsaNI GTAC 3 cut(s) 386, 707, 936
RseI CAYNNNNRTG 1 cut(s) 689
SacI GAGCTC 1 cut(s) 313
SaqAI TTAA 3 cut(s) 486, 765, 1088
SatI GCNGC 1 cut(s) 666
Sau3AI GATC 6 cut(s) 131, 163, 224, 253, 357, 907
Sau96I GGNCC 1 cut(s) 290
ScrFI CCNGG 1 cut(s) 1080
SduI GDGCHC 3 cut(s) 313, 829, 1147
SfaNI GCATC 2 cut(s) 47, 1014
SfcI CTRYAG 3 cut(s) 648, 666, 1107
Sfr274I CTCGAG 1 cut(s) 306
SlaI CTCGAG 1 cut(s) 306
SmiMI CAYNNNNRTG 1 cut(s) 689
SmlI CTYRAG 4 cut(s) 11, 111, 306, 1019
SmoI CTYRAG 4 cut(s) 11, 111, 306, 1019
SnaBI TACGTA 1 cut(s) 389
SphI GCATGC 1 cut(s) 754
SspMI CTAG 5 cut(s) 50, 99, 729, 1097, 1227
SstI GAGCTC 1 cut(s) 313
StyD4I CCNGG 1 cut(s) 1078
StyI CCWWGG 1 cut(s) 293
TaaI ACNGT 3 cut(s) 260, 448, 691
TaiI ACGT 3 cut(s) 91, 391, 619
TaqI TCGA 2 cut(s) 307, 1101
TfiI GAWTC 2 cut(s) 808, 1211
Tru1I TTAA 3 cut(s) 486, 765, 1088
Tru9I TTAA 3 cut(s) 486, 765, 1088
TseFI GTSAC 2 cut(s) 84, 173
TseI GCWGC 1 cut(s) 665
Tsp45I GTSAC 2 cut(s) 84, 173
TspDTI ATGAA 1 cut(s) 999
XagI CCTNNNNNAGG 2 cut(s) 272, 666
XapI RAATTY 6 cut(s) 106, 213, 719, 733, 1031, 1043
XceI RCATGY 1 cut(s) 754
XhoI CTCGAG 1 cut(s) 306
XmnI GAANNNNTTC 1 cut(s) 106
XspI CTAG 5 cut(s) 50, 99, 729, 1097, 1227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.