Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007702

Physical Location & Seq

Genomic Coordinates Reverse (-)

8253536 .. 8255604

Gene Structure 2069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14342.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGCAGGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAATATGTTGGAACCGGTCATGCTGATTTGAGTAGATTTGAGTGGGCTGTGAACATTCAGCGTGATAGTTATGCTTCATACATTGGTCACTACCCTATGCTTTCATACTTTGCTATTGCTGAGAACGAGTCTATTGGACGAGAACGCTACAATTTCATGCAGAAAATGCTATTACCCTGCGGCCTTCCTCCGGAAAGAGAAGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071011 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3b10

Protein Analysis

87

Amino Acids

10.16

Weight (kDa)

5.29

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF3b10	PF07189	5 - 73	7.9e-32	Splicing factor 3B subunit 10 (SF3b10)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23325 AT4G14342
fragaria_vesca	FvH4_3g22750 FvH4_3g22750 FvH4_7g05750
malus_domestica	MD03G1200200.v1.1 MD11G1217300.v1.1
prunus_persica	Prupe.4G214000_v2.0.a1
pyrus_communis	pycom11g19120 pycom12g00860
rosa_chinensis	RchiOBHm_Chr5g0039761 RchiOBHm_Chr7g0179491
rosa_multiflora	Rmu_sc0000103.1_g000017 Rmu_sc0000735.1_g000010
rosa_roxburghii	Rroxscaffold_1G00041450 Rroxscaffold_3G00273950
rosa_rugosa	Rorug06G0424900
rosa_samantha	Rh5BG272700 Rh5DG280600 Rh7AG024700 Rh7BG023900 Rh7DG025100
rosa_wichuraiana	Rw5G025100 Rw7G001980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgeI	ACCGGT	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	50
AluBI	AGCT	2 cut(s)	37, 53
AluI	AGCT	2 cut(s)	37, 53
Aor13HI	TCCGGA	1 cut(s)	244
AoxI	GGCC	1 cut(s)	235
AsiGI	ACCGGT	1 cut(s)	68
BisI	GCNGC	1 cut(s)	235
BlsI	GCNGC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	67
BmsI	GCATC	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	59
BsaWI	WCCGGW	2 cut(s)	68, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse118I	RCCGGY	1 cut(s)	68
BseAI	TCCGGA	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	2 cut(s)	47, 165
BshFI	GGCC	1 cut(s)	237
BshTI	ACCGGT	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	69, 245
BslI	CCNNNNNNNGG	1 cut(s)	244
BsnI	GGCC	1 cut(s)	237
Bsp13I	TCCGGA	1 cut(s)	244
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	2 cut(s)	46, 166
BspEI	TCCGGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	249
BstAPI	GCANNNNNTGC	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	33, 174
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	68
CspAI	ACCGGT	1 cut(s)	68
CviAII	CATG	2 cut(s)	74, 211
CviJI	RGCY	4 cut(s)	37, 53, 101, 237
CviKI_1	RGCY	4 cut(s)	37, 53, 101, 237
DdeI	CTNAG	2 cut(s)	33, 174
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
FaeI	CATG	2 cut(s)	77, 214
FaiI	YATR	7 cut(s)	60, 75, 126, 133, 152, 160, 212
FatI	CATG	2 cut(s)	73, 210
Fnu4HI	GCNGC	1 cut(s)	235
Fsp4HI	GCNGC	1 cut(s)	235
GluI	GCNGC	1 cut(s)	235
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	2 cut(s)	69, 245
Hin1II	CATG	2 cut(s)	77, 214
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	2 cut(s)	69, 245
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	248
HpyCH4V	TGCA	2 cut(s)	4, 214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	2 cut(s)	33, 174
Hsp92II	CATG	2 cut(s)	77, 214
Kpn2I	TCCGGA	1 cut(s)	244
LpnPI	CCDG	3 cut(s)	82, 244, 258
LweI	GCATC	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	140
MboII	GAAGA	1 cut(s)	38
MluCI	AATT	2 cut(s)	28, 205
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	2 cut(s)	250, 252
MroI	TCCGGA	1 cut(s)	244
MseI	TTAA	1 cut(s)	21
MspI	CCGG	2 cut(s)	69, 245
MwoI	GCNNNNNNNGC	1 cut(s)	220
NlaIII	CATG	2 cut(s)	77, 214
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	140
PinAI	ACCGGT	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	236
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	235
SchI	GAGTC	1 cut(s)	191
SetI	ASST	3 cut(s)	20, 39, 55
SfaNI	GCATC	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	2 cut(s)	28, 205
SsiI	CCGC	1 cut(s)	234
TasI	AATT	2 cut(s)	28, 205
TauI	GCSGC	1 cut(s)	237
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	3 cut(s)	120, 147, 199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.