Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007702

Physical Location & Seq

Genomic Coordinates Reverse (-)

27388716 .. 27391396

Gene Structure 2681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1200200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGCAGGCCAGTGATAGGTTCAACATCAATTCCCAGCTTGAACATCTTCAAGCTAAATATGTTGGGACCGGGCATGCCGATATGAATAGATATGAATGGGCCGTGAATATCCAACGCGATAGCTACGCATCCTATGTTGGCCATTATCCAATGCTTGCTTACTTTGCTCTTGCTGAGAATGAGTCCATTGGAAGAGAACGCTACAACTTTATGCAGAAAATGCTTTTGCCATGTGGTCCTCCTCCGGAAAGAGAAGACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071011 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3b10

Protein Analysis

88

Amino Acids

10.15

Weight (kDa)

5.23

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF3b10	PF07189	5 - 82	2.9e-38	Splicing factor 3B subunit 10 (SF3b10)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23325 AT4G14342
fragaria_vesca	FvH4_3g22750 FvH4_3g22750 FvH4_7g05750
malus_domestica	MD03G1200200.v1.1 MD11G1217300.v1.1
prunus_persica	Prupe.4G214000_v2.0.a1
pyrus_communis	pycom11g19120 pycom12g00860
rosa_chinensis	RchiOBHm_Chr5g0039761 RchiOBHm_Chr7g0179491
rosa_multiflora	Rmu_sc0000103.1_g000017 Rmu_sc0000735.1_g000010
rosa_roxburghii	Rroxscaffold_1G00041450 Rroxscaffold_3G00273950
rosa_rugosa	Rorug06G0424900
rosa_samantha	Rh5BG272700 Rh5DG280600 Rh7AG024700 Rh7BG023900 Rh7DG025100
rosa_wichuraiana	Rw5G025100 Rw7G001980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgsI	TTSAA	3 cut(s)	22, 41, 50
AluBI	AGCT	3 cut(s)	37, 53, 123
AluI	AGCT	3 cut(s)	37, 53, 123
Aor13HI	TCCGGA	1 cut(s)	244
AoxI	GGCC	3 cut(s)	6, 99, 139
Asp700I	GAANNNNTTC	1 cut(s)	45
AspS9I	GGNCC	3 cut(s)	66, 99, 236
AsuC2I	CCSGG	1 cut(s)	70
AvaII	GGWCC	2 cut(s)	66, 236
BalI	TGGCCA	1 cut(s)	141
BceAI	ACGGC	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	70
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	2 cut(s)	66, 236
BmgT120I	GGNCC	3 cut(s)	66, 99, 236
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	70
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse1I	ACTGG	1 cut(s)	9
BseAI	TCCGGA	1 cut(s)	244
BseGI	GGATG	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	9
BseRI	GAGGAG	1 cut(s)	231
BseYI	CCCAGC	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	3 cut(s)	8, 101, 141
BsiSI	CCGG	2 cut(s)	69, 245
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	3 cut(s)	8, 101, 141
Bsp13I	TCCGGA	1 cut(s)	244
BspANI	GGCC	3 cut(s)	8, 101, 141
BspCNI	CTCAG	1 cut(s)	166
BspEI	TCCGGA	1 cut(s)	244
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	9
Bst6I	CTCTTC	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	220
BstC8I	GCNNGC	3 cut(s)	6, 75, 156
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	128
BstFNI	CGCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 220
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	68
BstUI	CGCG	1 cut(s)	117
BsuRI	GGCC	3 cut(s)	8, 101, 141
BtsCI	GGATG	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	3 cut(s)	6, 75, 156
Cfr13I	GGNCC	3 cut(s)	66, 99, 236
CviAII	CATG	2 cut(s)	74, 231
CviJI	RGCY	6 cut(s)	8, 37, 53, 101, 123, 141
CviKI_1	RGCY	6 cut(s)	8, 37, 53, 101, 123, 141
DdeI	CTNAG	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	66, 236
FaeI	CATG	2 cut(s)	77, 234
FaiI	YATR	7 cut(s)	60, 75, 83, 93, 135, 212, 232
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	2 cut(s)	73, 230
FokI	GGATG	1 cut(s)	115
GsaI	CCCAGC	1 cut(s)	37
HaeIII	GGCC	3 cut(s)	8, 101, 141
HapII	CCGG	2 cut(s)	69, 245
Hin1II	CATG	2 cut(s)	77, 234
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	2 cut(s)	69, 245
Hpy188III	TCNNGA	1 cut(s)	245
HpyCH4V	TGCA	2 cut(s)	4, 214
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 220
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	77, 234
Kpn2I	TCCGGA	1 cut(s)	244
LpnPI	CCDG	4 cut(s)	22, 47, 82, 258
LweI	GCATC	1 cut(s)	137
MboII	GAAGA	2 cut(s)	38, 204
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	1 cut(s)	28
MluNI	TGGCCA	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	2 cut(s)	249, 252
Mox20I	TGGCCA	1 cut(s)	141
MroI	TCCGGA	1 cut(s)	244
MroXI	GAANNNNTTC	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	141
MspI	CCGG	2 cut(s)	69, 245
MspR9I	CCNGG	1 cut(s)	70
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	164, 220
NciI	CCSGG	1 cut(s)	70
NlaIII	CATG	2 cut(s)	77, 234
NlaIV	GGNNCC	1 cut(s)	67
NspI	RCATGY	1 cut(s)	77
PaeI	GCATGC	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	45
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	3 cut(s)	66, 99, 236
Sau96I	GGNCC	3 cut(s)	66, 99, 236
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	70
SetI	ASST	4 cut(s)	20, 39, 55, 125
SfaNI	GCATC	1 cut(s)	137
SinI	GGWCC	2 cut(s)	66, 236
SphI	GCATGC	1 cut(s)	77
Sse9I	AATT	1 cut(s)	28
StyD4I	CCNGG	1 cut(s)	68
TasI	AATT	1 cut(s)	28
TscAI	CASTG	1 cut(s)	16
TspDTI	ATGAA	2 cut(s)	98, 108
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	2 cut(s)	66, 236
XceI	RCATGY	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.