Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000103.1

Orthogroup ID

OG0007702

Physical Location & Seq

Genomic Coordinates Forward (+)

80390 .. 82688

Gene Structure 2299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000103.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ctgtcttctccttcagctgggaatttcaattctctctccctacccaattcgcgccggtgcttcttctccgcagccaatatgcaggccagtgataggttcaacatcaattcccagctcgaacaccttcaagctaagtacgtcggaacagggcatgccgacttgcatagatatgaatgggctgtgaatattcagcgtgatagctatgcctcctatgttggtcattatccgattcttgcctactttgctcttgctgagaatgagtcgattgggagagaacgctacaactttatgcagagaatgcttttgccttgcggtcctcccccagagagagaagacgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071011 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3b10

Protein Analysis

113

Amino Acids

12.89

Weight (kDa)

6.07

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23325 AT4G14342
fragaria_vesca	FvH4_3g22750 FvH4_3g22750 FvH4_7g05750
malus_domestica	MD03G1200200.v1.1 MD11G1217300.v1.1
prunus_persica	Prupe.4G214000_v2.0.a1
pyrus_communis	pycom11g19120 pycom12g00860
rosa_chinensis	RchiOBHm_Chr5g0039761 RchiOBHm_Chr7g0179491
rosa_multiflora	Rmu_sc0000103.1_g000017 Rmu_sc0000735.1_g000010
rosa_roxburghii	Rroxscaffold_1G00041450 Rroxscaffold_3G00273950
rosa_rugosa	Rorug06G0424900
rosa_samantha	Rh5BG272700 Rh5DG280600 Rh7AG024700 Rh7BG023900 Rh7DG025100
rosa_wichuraiana	Rw5G025100 Rw7G001980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	52
AciI	CCGC	2 cut(s)	69, 312
AcsI	RAATTY	1 cut(s)	22
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	17, 93
AgsI	TTSAA	3 cut(s)	28, 100, 128
AluBI	AGCT	4 cut(s)	17, 115, 131, 201
AluI	AGCT	4 cut(s)	17, 115, 131, 201
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	83
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 93
Bse118I	RCCGGY	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	87
BseLI	CCNNNNNNNGG	2 cut(s)	17, 93
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	83
BseYI	CCCAGC	2 cut(s)	17, 111
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	55
BslI	CCNNNNNNNGG	2 cut(s)	17, 93
BsmI	GAATGC	1 cut(s)	303
BsnI	GGCC	1 cut(s)	86
BspACI	CCGC	2 cut(s)	69, 312
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	244
BspFNI	CGCG	1 cut(s)	52
BsrFI	RCCGGY	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	87
BssAI	RCCGGY	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstC8I	GCNNGC	2 cut(s)	84, 153
BstDEI	CTNAG	2 cut(s)	132, 252
BstFNI	CGCG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 298
BstNSI	RCATGY	1 cut(s)	155
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	84, 153
CfoI	GCGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	7 cut(s)	17, 74, 86, 115, 131, 179, 201
CviKI_1	RGCY	7 cut(s)	17, 74, 86, 115, 131, 179, 201
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	132, 252
Eco47I	GGWCC	1 cut(s)	314
FaeI	CATG	1 cut(s)	155
FaiI	YATR	7 cut(s)	80, 153, 165, 171, 204, 213, 290
FatI	CATG	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	72
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	72
GsaI	CCCAGC	2 cut(s)	21, 115
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	55
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	155
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	2 cut(s)	229, 260
HpaII	CCGG	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	143, 228
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	21, 134
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	82, 163, 292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 298
HpyF3I	CTNAG	2 cut(s)	132, 252
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	155
HspAI	GCGC	1 cut(s)	52
LpnPI	CCDG	7 cut(s)	3, 68, 68, 100, 125, 132, 336
Lsp1109I	GCAGC	1 cut(s)	83
MaeII	ACGT	1 cut(s)	138
MboII	GAAGA	1 cut(s)	55
MluCI	AATT	4 cut(s)	22, 28, 46, 106
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	2 cut(s)	217, 327
MroXI	GAANNNNTTC	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	303
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	242, 298
NlaIII	CATG	1 cut(s)	155
NspI	RCATGY	1 cut(s)	155
PaeI	GCATGC	1 cut(s)	155
PctI	GAATGC	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PspFI	CCCAGC	2 cut(s)	17, 111
PspPI	GGNCC	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	168
SatI	GCNGC	1 cut(s)	72
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	1 cut(s)	269
SetI	ASST	7 cut(s)	19, 98, 117, 126, 133, 141, 203
SgrAI	CRCCGGYG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	168
SphI	GCATGC	1 cut(s)	155
Sse9I	AATT	4 cut(s)	22, 28, 46, 106
SsiI	CCGC	2 cut(s)	69, 312
SspI	AATATT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	117, 263
TasI	AATT	4 cut(s)	22, 28, 46, 106
TfiI	GAWTC	1 cut(s)	229
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.