Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007702

Physical Location & Seq

Genomic Coordinates Forward (+)

1947899 .. 1948266

Gene Structure 368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG025100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAATTCCCAGCTCGAACACCTTCAAGCTAAGTACGTTGGAACAGGGCATGCCGACTTGCATAGATATGAATGGACCGTGAACATTCAGCGTGATAGCTATGCCTCCTATATTGGTCATTATCATATTCTTTCGTACTTTGCTCTTGCCGAGAATGAGTCGATTGGGAGAGAACGTTACAAGTTCATTCAGAGAATGCTTTTGCCTTGCGGTCCTCCCCCAGAAAAAGCAGACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071011 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3b10

Protein Analysis

79

Amino Acids

9.24

Weight (kDa)

6.17

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF3b10	PF07189	2 - 74	1e-34	Splicing factor 3B subunit 10 (SF3b10)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23325 AT4G14342
fragaria_vesca	FvH4_3g22750 FvH4_3g22750 FvH4_7g05750
malus_domestica	MD03G1200200.v1.1 MD11G1217300.v1.1
prunus_persica	Prupe.4G214000_v2.0.a1
pyrus_communis	pycom11g19120 pycom12g00860
rosa_chinensis	RchiOBHm_Chr5g0039761 RchiOBHm_Chr7g0179491
rosa_multiflora	Rmu_sc0000103.1_g000017 Rmu_sc0000735.1_g000010
rosa_roxburghii	Rroxscaffold_1G00041450 Rroxscaffold_3G00273950
rosa_rugosa	Rorug06G0424900
rosa_samantha	Rh5BG272700 Rh5DG280600 Rh7AG024700 Rh7BG023900 Rh7DG025100
rosa_wichuraiana	Rw5G025100 Rw7G001980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	210
AclI	AACGTT	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	2 cut(s)	35, 137
AgsI	TTSAA	1 cut(s)	26
AluBI	AGCT	3 cut(s)	13, 29, 99
AluI	AGCT	3 cut(s)	13, 29, 99
ApoI	RAATTY	1 cut(s)	4
Asp700I	GAANNNNTTC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	75, 212
AvaII	GGWCC	2 cut(s)	75, 212
Bme18I	GGWCC	2 cut(s)	75, 212
BmgT120I	GGNCC	2 cut(s)	75, 212
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
BseYI	CCCAGC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	201
BspACI	CCGC	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	75, 212
Csp6I	GTAC	2 cut(s)	34, 136
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	3 cut(s)	13, 29, 99
CviKI_1	RGCY	3 cut(s)	13, 29, 99
CviQI	GTAC	2 cut(s)	34, 136
DdeI	CTNAG	1 cut(s)	30
Eco47I	GGWCC	2 cut(s)	75, 212
EcoRI	GAATTC	1 cut(s)	4
FaeI	CATG	1 cut(s)	53
FaiI	YATR	6 cut(s)	51, 63, 69, 102, 111, 126
FatI	CATG	1 cut(s)	49
GsaI	CCCAGC	1 cut(s)	13
Hin1II	CATG	1 cut(s)	53
HinfI	GANTC	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	192
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	2 cut(s)	36, 175
HpyCH4V	TGCA	1 cut(s)	61
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	2 cut(s)	36, 175
Hsp92II	CATG	1 cut(s)	53
LpnPI	CCDG	3 cut(s)	23, 30, 234
MaeII	ACGT	2 cut(s)	36, 175
MaeIII	GTNAC	1 cut(s)	176
MluCI	AATT	1 cut(s)	4
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	2 cut(s)	115, 225
MroXI	GAANNNNTTC	1 cut(s)	21
MslI	CAYNNNNRTG	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	201
NlaIII	CATG	1 cut(s)	53
NmeAIII	GCCGAG	1 cut(s)	175
NspI	RCATGY	1 cut(s)	53
PaeI	GCATGC	1 cut(s)	53
PctI	GAATGC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	21
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp1406I	AACGTT	1 cut(s)	175
PspFI	CCCAGC	1 cut(s)	9
PspPI	GGNCC	2 cut(s)	75, 212
RsaI	GTAC	2 cut(s)	35, 137
RsaNI	GTAC	2 cut(s)	34, 136
RseI	CAYNNNNRTG	1 cut(s)	66
Sau96I	GGNCC	2 cut(s)	75, 212
SchI	GAGTC	1 cut(s)	167
SetI	ASST	6 cut(s)	15, 24, 31, 39, 101, 178
SinI	GGWCC	2 cut(s)	75, 212
SmiMI	CAYNNNNRTG	1 cut(s)	66
SphI	GCATGC	1 cut(s)	53
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	2 cut(s)	39, 178
TaqI	TCGA	2 cut(s)	15, 161
TasI	AATT	1 cut(s)	4
TspDTI	ATGAA	3 cut(s)	17, 84, 175
VpaK11BI	GGWCC	2 cut(s)	75, 212
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.