Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000735.1

Orthogroup ID

OG0007702

Physical Location & Seq

Genomic Coordinates Reverse (-)

51883 .. 52860

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000735.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgacagcgaggctacggaggctcgggatcatcaatcaattaaacggcgacgagagagtcgaagtggctggagcttcgatcggagcttcttcgtcgttttcgagcttggagtacatctctggcgaggcaattgcagatagagaaaccgaaggccatgccagtgataggttcaacatgaattcccagctcgaacaccttcaagctaagtacgttggaacagggcatgccgacttgcatagatatgaatggaccgtgaacattcagcgtgatagctatgcctcctatattggtcattatcctattctttcgtactttgctcttgccgagaatgagtcgattgggagagaacgttacaagttcattcagagaatgcttttgcctcgcggtccacccccagaaggagcagacggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071011 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3b10

Protein Analysis

137

Amino Acids

15.33

Weight (kDa)

5.7

Isoelectric Point (pI)

28.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23325 AT4G14342
fragaria_vesca	FvH4_3g22750 FvH4_3g22750 FvH4_7g05750
malus_domestica	MD03G1200200.v1.1 MD11G1217300.v1.1
prunus_persica	Prupe.4G214000_v2.0.a1
pyrus_communis	pycom11g19120 pycom12g00860
rosa_chinensis	RchiOBHm_Chr5g0039761 RchiOBHm_Chr7g0179491
rosa_multiflora	Rmu_sc0000103.1_g000017 Rmu_sc0000735.1_g000010
rosa_roxburghii	Rroxscaffold_1G00041450 Rroxscaffold_3G00273950
rosa_rugosa	Rorug06G0424900
rosa_samantha	Rh5BG272700 Rh5DG280600 Rh7AG024700 Rh7BG023900 Rh7DG025100
rosa_wichuraiana	Rw5G025100 Rw7G001980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AccII	CGCG	1 cut(s)	384
AciI	CCGC	1 cut(s)	384
AclI	AACGTT	1 cut(s)	349
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	178
AfaI	GTAC	3 cut(s)	113, 209, 311
AfiI	CCNNNNNNNGG	2 cut(s)	165, 398
AgsI	TTSAA	2 cut(s)	172, 200
AluBI	AGCT	6 cut(s)	74, 86, 105, 187, 203, 273
AluI	AGCT	6 cut(s)	74, 86, 105, 187, 203, 273
AlwI	GGATC	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	178
Asp700I	GAANNNNTTC	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	249, 386
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	2 cut(s)	249, 386
BceAI	ACGGC	1 cut(s)	61
BcgI	CGANNNNNNTGC	4 cut(s)	113, 137, 147, 171
Bme18I	GGWCC	2 cut(s)	249, 386
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	249, 386
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BpmI	CTGGAG	1 cut(s)	90
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 398
Bse1I	ACTGG	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	165, 398
BseNI	ACTGG	1 cut(s)	159
BseYI	CCCAGC	1 cut(s)	183
Bsh1236I	CGCG	1 cut(s)	384
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	153
BsiEI	CGRYCG	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	165, 398
BsmI	GAATGC	1 cut(s)	375
BsnI	GGCC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	27, 78
BspACI	CCGC	1 cut(s)	384
BspANI	GGCC	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	384
BspPI	GGATC	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	27, 78
Bst4CI	ACNGT	2 cut(s)	253, 410
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	204
BstFNI	CGCG	1 cut(s)	384
BstKTI	GATC	2 cut(s)	30, 81
BstMBI	GATC	2 cut(s)	27, 78
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstNSI	RCATGY	1 cut(s)	227
BstUI	CGCG	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	249, 386
Csp6I	GTAC	3 cut(s)	112, 208, 310
CviAII	CATG	3 cut(s)	155, 175, 224
CviQI	GTAC	3 cut(s)	112, 208, 310
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	2 cut(s)	29, 80
DpnII	GATC	2 cut(s)	27, 78
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eco47I	GGWCC	2 cut(s)	249, 386
Eco88I	CYCGRG	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	178
FaeI	CATG	3 cut(s)	158, 178, 227
FaiI	YATR	7 cut(s)	156, 176, 225, 237, 243, 276, 285
FatI	CATG	3 cut(s)	154, 174, 223
GsaI	CCCAGC	1 cut(s)	187
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	153
Hin1II	CATG	3 cut(s)	158, 178, 227
HinfI	GANTC	2 cut(s)	57, 332
Hpy166II	GTNNAC	2 cut(s)	256, 389
Hpy188I	TCNGA	2 cut(s)	83, 366
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	2 cut(s)	256, 389
Hpy99I	CGWCG	2 cut(s)	53, 97
HpyAV	CCTTC	3 cut(s)	143, 206, 392
HpyCH4III	ACNGT	2 cut(s)	253, 410
HpyCH4IV	ACGT	2 cut(s)	210, 349
HpyCH4V	TGCA	2 cut(s)	134, 235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	2 cut(s)	210, 349
Hsp92II	CATG	3 cut(s)	158, 178, 227
Kzo9I	GATC	2 cut(s)	27, 78
LmnI	GCTCC	3 cut(s)	71, 83, 401
LpnPI	CCDG	6 cut(s)	54, 105, 172, 197, 204, 408
MaeII	ACGT	2 cut(s)	210, 349
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	2 cut(s)	29, 80
MboI	GATC	2 cut(s)	27, 78
MboII	GAAGA	1 cut(s)	81
MfeI	CAATTG	1 cut(s)	129
MluCI	AATT	3 cut(s)	38, 129, 178
MlyI	GAGTC	2 cut(s)	66, 341
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	5 cut(s)	3, 12, 118, 289, 390
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	1 cut(s)	41
MslI	CAYNNNNRTG	2 cut(s)	159, 240
MunI	CAATTG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	375
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	19
NdeII	GATC	2 cut(s)	27, 78
NlaIII	CATG	3 cut(s)	158, 178, 227
NmeAIII	GCCGAG	1 cut(s)	349
NspI	RCATGY	1 cut(s)	227
PaeI	GCATGC	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 98
PctI	GAATGC	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	195
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	2 cut(s)	65, 340
PpsI	GAGTC	2 cut(s)	65, 340
Psp1406I	AACGTT	1 cut(s)	349
PspFI	CCCAGC	1 cut(s)	183
PspPI	GGNCC	2 cut(s)	249, 386
PvuI	CGATCG	1 cut(s)	81
RsaI	GTAC	3 cut(s)	113, 209, 311
RsaNI	GTAC	3 cut(s)	112, 208, 310
RseI	CAYNNNNRTG	2 cut(s)	159, 240
SaqAI	TTAA	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	27, 78
Sau96I	GGNCC	2 cut(s)	249, 386
SchI	GAGTC	2 cut(s)	66, 341
SinI	GGWCC	2 cut(s)	249, 386
SmiMI	CAYNNNNRTG	2 cut(s)	159, 240
SphI	GCATGC	1 cut(s)	227
Sse9I	AATT	3 cut(s)	38, 129, 178
SsiI	CCGC	1 cut(s)	384
TaaI	ACNGT	2 cut(s)	253, 410
TaiI	ACGT	2 cut(s)	213, 352
TaqI	TCGA	5 cut(s)	60, 77, 101, 189, 335
TasI	AATT	3 cut(s)	38, 129, 178
TatI	WGTACW	1 cut(s)	111
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	166
TspDTI	ATGAA	3 cut(s)	191, 258, 349
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	2 cut(s)	249, 386
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.