Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007702

Physical Location & Seq

Genomic Coordinates Reverse (-)

65719372 .. 65719635

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00273950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGCAGGCCAGTGATAGGTTCAACATGAATTCCCAGCTCGAACACCTTCAAGCTAAGTACGTTGGAACAGGGCATGCCGACTTGCATAGATATGAATGGACCGTGAATATTCAGCGTGATAGCTATGCCTCCTATATTGGTCATTATCCTATACTTTCGTACTTTGCTCTTGCCGAGAATGAGTCGATTGGGAGAGAACGTTACAAGTTCATGCAGAGAATGCTTTTGCCTTGCGGTCCTCCCCCAGAAAGAGCAGACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071011 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3b10

Protein Analysis

87

Amino Acids

10.2

Weight (kDa)

6.04

Isoelectric Point (pI)

30.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF3b10	PF07189	5 - 82	2.3e-36	Splicing factor 3B subunit 10 (SF3b10)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23325 AT4G14342
fragaria_vesca	FvH4_3g22750 FvH4_3g22750 FvH4_7g05750
malus_domestica	MD03G1200200.v1.1 MD11G1217300.v1.1
prunus_persica	Prupe.4G214000_v2.0.a1
pyrus_communis	pycom11g19120 pycom12g00860
rosa_chinensis	RchiOBHm_Chr5g0039761 RchiOBHm_Chr7g0179491
rosa_multiflora	Rmu_sc0000103.1_g000017 Rmu_sc0000735.1_g000010
rosa_roxburghii	Rroxscaffold_1G00041450 Rroxscaffold_3G00273950
rosa_rugosa	Rorug06G0424900
rosa_samantha	Rh5BG272700 Rh5DG280600 Rh7AG024700 Rh7BG023900 Rh7DG025100
rosa_wichuraiana	Rw5G025100 Rw7G001980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	234
AclI	AACGTT	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	28
AfaI	GTAC	2 cut(s)	59, 161
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	22, 50
AluBI	AGCT	3 cut(s)	37, 53, 123
AluI	AGCT	3 cut(s)	37, 53, 123
AoxI	GGCC	1 cut(s)	6
ApoI	RAATTY	1 cut(s)	28
Asp700I	GAANNNNTTC	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	99, 236
AvaII	GGWCC	2 cut(s)	99, 236
Bme18I	GGWCC	2 cut(s)	99, 236
BmgT120I	GGNCC	2 cut(s)	99, 236
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse1I	ACTGG	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	9
BseYI	CCCAGC	1 cut(s)	33
BshFI	GGCC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	103
BstAPI	GCANNNNNTGC	1 cut(s)	220
BstC8I	GCNNGC	2 cut(s)	6, 75
BstDEI	CTNAG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstNSI	RCATGY	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	8
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	2 cut(s)	6, 75
Cfr13I	GGNCC	2 cut(s)	99, 236
Csp6I	GTAC	2 cut(s)	58, 160
CviAII	CATG	3 cut(s)	25, 74, 211
CviJI	RGCY	4 cut(s)	8, 37, 53, 123
CviKI_1	RGCY	4 cut(s)	8, 37, 53, 123
CviQI	GTAC	2 cut(s)	58, 160
DdeI	CTNAG	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	99, 236
EcoRI	GAATTC	1 cut(s)	28
FaeI	CATG	3 cut(s)	28, 77, 214
FaiI	YATR	8 cut(s)	26, 75, 87, 93, 126, 135, 152, 212
FatI	CATG	3 cut(s)	24, 73, 210
GsaI	CCCAGC	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	3 cut(s)	28, 77, 214
HinfI	GANTC	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	2 cut(s)	60, 199
HpyCH4V	TGCA	3 cut(s)	4, 85, 214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	2 cut(s)	60, 199
Hsp92II	CATG	3 cut(s)	28, 77, 214
LpnPI	CCDG	4 cut(s)	22, 47, 54, 258
MaeII	ACGT	2 cut(s)	60, 199
MaeIII	GTNAC	1 cut(s)	200
MluCI	AATT	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	2 cut(s)	139, 249
MroXI	GAANNNNTTC	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	220
NlaIII	CATG	3 cut(s)	28, 77, 214
NmeAIII	GCCGAG	1 cut(s)	199
NspI	RCATGY	1 cut(s)	77
PaeI	GCATGC	1 cut(s)	77
PctI	GAATGC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	45
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp1406I	AACGTT	1 cut(s)	199
PspFI	CCCAGC	1 cut(s)	33
PspPI	GGNCC	2 cut(s)	99, 236
RsaI	GTAC	2 cut(s)	59, 161
RsaNI	GTAC	2 cut(s)	58, 160
RseI	CAYNNNNRTG	1 cut(s)	90
Sau96I	GGNCC	2 cut(s)	99, 236
SchI	GAGTC	1 cut(s)	191
SetI	ASST	7 cut(s)	20, 39, 48, 55, 63, 125, 202
SinI	GGWCC	2 cut(s)	99, 236
SmiMI	CAYNNNNRTG	1 cut(s)	90
SphI	GCATGC	1 cut(s)	77
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	234
SspI	AATATT	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	2 cut(s)	63, 202
TaqI	TCGA	2 cut(s)	39, 185
TasI	AATT	1 cut(s)	28
TscAI	CASTG	1 cut(s)	16
TspDTI	ATGAA	3 cut(s)	41, 108, 199
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	2 cut(s)	99, 236
XapI	RAATTY	1 cut(s)	28
XceI	RCATGY	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.