Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012380

Physical Location & Seq

Genomic Coordinates Forward (+)

8378428 .. 8380714

Gene Structure 2287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14605.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGCAAAGTCTTAGTCAACTTGGACCTTCAGAGATTTTCCTTGTCGCCAGAAGAGAAAAACCCAGTACGAGAGCACAGCTTTGGTTTACGGGAAGACTCTCTTTTAGACAAGAAACAAATGGGATTCGTTTAAAGAATAGAGTAGAGTTTAGTCCAAGACCTGTACCTCCAAATCTGATCGCAGCAGAGAAAGAAGAAGCTAAAGCTGTTTTAACTCTATTCTTCAAGAAGCAAGGTCTTAGCAACAGTCTCTCTTCTCGGTTAATCAACAAATCCGATCTATTCATTGACCATTTAGTGTCCAGGCTCCATTCTGTTCATAAAGCTCGATACCTCGTAGGAAGAGAGCTTACTACACTTGAGATTCGAGATTCTCTCATTCCTTACCTCGAACAACTTCATGAAGAACATGGTGATCTTCTCGCTGAGCTTGTTGTGAGCTTCCCTGATCCACCAGCTGAACCTAGACTTGTTGCTTCATCTCCAGTTTCTGTCCTACCACCTCGTGGTGACACAGATTCTGCTGCAGACACTCGTAAACTCAGAGCGGTGTCTCGAGTCAGCGAACTTGACACAGAAGGTGCATTACGTCCTCAGACCCTTTACCTTCTTGACCTCGGTTTAAACCTCGAGCAGATCAAAACGATCACTCGAAAGTTCGCTGCCTTTCCTTATTACAGCCTCGATGGAAAAATAAAACCTGTTGTGGAATTCCTTCTAGACCTCGGAATTCCTAAATCAGATATCCCCACAATCCTCTGCAAACGCCCACAGATATGCGGAATCAGCCTAACCGATAACCTGAAACCGACAATGGCCTTTCTTGAGACACTTGGCATTGACAAGAACCAATGGGCAAAGATCATTTCCCGTTTCCCAGCCATCCTCACTTACAGCCGCCAGAAACTTACTTCAACTGTCGAGTTCTTATCACAAACTGGTCTCACAGAAGAACAGATAGGGAGAATCCTAACCCGATGTCCAAACATCATGAGTTACAGTGTAGAAGACAAGCTCCGTCCAACTATGGAGTACTTTAGATCGCTAAATGTCGATGTTGCGGTTCTCCTACATCGATGTCCCCAAACGTTTGGATTAAGCATAGAGTCGAATTTGAAGCCAGTAACAGAGTTCTTCCTCGAAAAGGGTTTTGGTTTAGATGAAATTGGAATCATGATCTCTAGATATGGAGCTTTGTACACATTCAGCTTGAAAGAGAATGTCATGCCGAAATGGGATTACTTTCAGACAATGGACTATCCAAAATCCGAGCTTGTGAAGTTCCCTCAGTTTTTTGGGTACAGTTTACAAGAGAGGATCAAGCCGAGATATGAGCTGGTTCAGAGAAGTGGAGTGAGACTGCTGTTGAACCAGGTTTTATCGCTGTCGGGAATTGAGTTCGAGAAAGTTGTTAAGAAGAAGATGATGAAACTTGTGTCTAATAACGTAATTGCTGAACAAAGTAGTGGTGGTTTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032502 GO:0033993 GO:0034622 GO:0034641 GO:0042221 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

493

Amino Acids

55.96

Weight (kDa)

9.21

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	179 - 374	3.2e-31	mTERF
mTERF	PF02536	353 - 468	3.2e-20	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14605 AT4G14605
fragaria_vesca	FvH4_6g53060 FvH4_6g53060
malus_domestica	MD17G1015100.v1.1
prunus_persica	Prupe.3G302700_v2.0.a1 Prupe.3G302700_v2.0.a1 Prupe.3G302700_v2.0.a1 Prupe.3G302700_v2.0.a1
pyrus_communis	pycom17g01220
rosa_chinensis	RchiOBHm_Chr2g0174841
rosa_laevigata	RLG00000022300
rosa_roxburghii	Rroxscaffold_2G00077650
rosa_rugosa	Rorug02G0579700
rosa_samantha	Rh2AG661000 Rh2BG672400 Rh2CG635200 Rh2DG685500
rosa_wichuraiana	Rw2G054170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	506
AccBSI	CCGCTC	1 cut(s)	548
AciI	CCGC	4 cut(s)	548, 780, 898, 1061
AclI	AACGTT	1 cut(s)	1088
AclWI	GGATC	2 cut(s)	443, 1325
AcsI	RAATTY	3 cut(s)	710, 729, 1111
AcuI	CTGAAG	1 cut(s)	12
AdeI	CACNNNGTG	1 cut(s)	506
AfaI	GTAC	5 cut(s)	67, 165, 1034, 1199, 1301
AfiI	CCNNNNNNNGG	2 cut(s)	506, 1144
AgsI	TTSAA	5 cut(s)	226, 915, 1117, 1213, 1369
AjnI	CCWGG	2 cut(s)	302, 1371
AjuI	GAANNNNNNNTTGG	2 cut(s)	1134, 1166
Alw21I	GWGCWC	1 cut(s)	76
Alw26I	GTCTC	5 cut(s)	254, 558, 821, 947, 1351
AlwI	GGATC	2 cut(s)	443, 1325
AlwNI	CAGNNNCTG	2 cut(s)	491, 521
Ama87I	CYCGRG	2 cut(s)	555, 629
AoxI	GGCC	1 cut(s)	816
ApeKI	GCWGC	3 cut(s)	182, 524, 662
ApoI	RAATTY	3 cut(s)	710, 729, 1111
ArsI	GACNNNNNNTTYG	1 cut(s)	30
Asp700I	GAANNNNTTC	2 cut(s)	396, 714
AspS9I	GGNCC	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	425, 521
AvaI	CYCGRG	2 cut(s)	555, 629
AvaII	GGWCC	1 cut(s)	23
BarI	GAAGNNNNNNTAC	4 cut(s)	334, 366, 570, 602
BauI	CACGAG	1 cut(s)	504
BbsI	GAAGAC	2 cut(s)	100, 1014
Bbv12I	GWGCWC	1 cut(s)	76
BbvI	GCAGC	3 cut(s)	194, 511, 649
BccI	CCATC	2 cut(s)	680, 890
BciT130I	CCWGG	2 cut(s)	304, 1373
BcoDI	GTCTC	5 cut(s)	254, 558, 821, 947, 1351
BfaI	CTAG	3 cut(s)	465, 719, 1182
BfmI	CTRYAG	1 cut(s)	525
BisI	GCNGC	4 cut(s)	183, 525, 663, 898
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	4 cut(s)	184, 526, 664, 899
BmcAI	AGTACT	1 cut(s)	1034
Bme1390I	CCNGG	2 cut(s)	304, 1373
Bme18I	GGWCC	1 cut(s)	23
BmeT110I	CYCGRG	2 cut(s)	555, 629
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	2 cut(s)	304, 1373
BmrI	ACTGGG	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	57
BpiI	GAAGAC	2 cut(s)	100, 1014
BplI	GAGNNNNNCTC	2 cut(s)	360, 392
BpmI	CTGGAG	1 cut(s)	468
Bpu1102I	GCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	2 cut(s)	380, 845
Bsa29I	ATCGAT	1 cut(s)	1075
BsaI	GGTCTC	1 cut(s)	947
BsaJI	CCNNGG	2 cut(s)	616, 724
Bsc4I	CCNNNNNNNGG	2 cut(s)	506, 1144
Bse1I	ACTGG	4 cut(s)	63, 485, 943, 1121
BseBI	CCWGG	2 cut(s)	304, 1373
BseCI	ATCGAT	1 cut(s)	1075
BseDI	CCNNGG	2 cut(s)	616, 724
BseGI	GGATG	1 cut(s)	882
BseLI	CCNNNNNNNGG	2 cut(s)	506, 1144
BseMII	CTCAG	4 cut(s)	417, 556, 608, 1301
BseNI	ACTGG	4 cut(s)	63, 485, 943, 1121
BseXI	GCAGC	3 cut(s)	194, 511, 649
BseYI	CCCAGC	1 cut(s)	877
BshFI	GGCC	1 cut(s)	818
BshVI	ATCGAT	1 cut(s)	1075
BsiHKAI	GWGCWC	1 cut(s)	76
BsiHKCI	CYCGRG	2 cut(s)	555, 629
BslFI	GGGAC	1 cut(s)	1065
BslI	CCNNNNNNNGG	2 cut(s)	506, 1144
BsmAI	GTCTC	5 cut(s)	254, 558, 821, 947, 1351
BsmFI	GGGAC	1 cut(s)	1065
BsnI	GGCC	1 cut(s)	818
Bso31I	GGTCTC	1 cut(s)	947
BsoBI	CYCGRG	2 cut(s)	555, 629
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp1407I	TGTACA	1 cut(s)	1197
Bsp1720I	GCTNAGC	1 cut(s)	426
BspACI	CCGC	4 cut(s)	548, 780, 898, 1061
BspANI	GGCC	1 cut(s)	818
BspCNI	CTCAG	4 cut(s)	418, 555, 607, 1300
BspDI	ATCGAT	1 cut(s)	1075
BspHI	TCATGA	3 cut(s)	400, 990, 1173
BspLI	GGNNCC	1 cut(s)	308
BspMAI	CTGCAG	1 cut(s)	529
BspPI	GGATC	2 cut(s)	443, 1325
BspTNI	GGTCTC	1 cut(s)	947
BsrBI	CCGCTC	1 cut(s)	548
BsrGI	TGTACA	1 cut(s)	1197
BsrI	ACTGG	4 cut(s)	63, 485, 943, 1121
BssECI	CCNNGG	2 cut(s)	616, 724
BssSI	CACGAG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	504
Bst2UI	CCWGG	2 cut(s)	304, 1373
Bst4CI	ACNGT	4 cut(s)	248, 919, 1001, 1304
Bst6I	CTCTTC	3 cut(s)	46, 259, 337
BstAUI	TGTACA	1 cut(s)	1197
BstDEI	CTNAG	6 cut(s)	11, 239, 426, 542, 594, 1287
BstENI	CCTNNNNNAGG	1 cut(s)	1142
BstF5I	GGATG	1 cut(s)	882
BstMAI	GTCTC	5 cut(s)	254, 558, 821, 947, 1351
BstMWI	GCNNNNNNNGC	1 cut(s)	786
BstNI	CCWGG	2 cut(s)	304, 1373
BstSCI	CCNGG	2 cut(s)	302, 1371
BstSFI	CTRYAG	1 cut(s)	525
BstV1I	GCAGC	3 cut(s)	194, 511, 649
BstV2I	GAAGAC	2 cut(s)	100, 1014
BstXI	CCANNNNNNTGG	1 cut(s)	1091
Bsu15I	ATCGAT	1 cut(s)	1075
BsuRI	GGCC	1 cut(s)	818
BsuTUI	ATCGAT	1 cut(s)	1075
BtsCI	GGATG	1 cut(s)	882
BtsIMutI	CAGTG	1 cut(s)	1006
CaiI	CAGNNNCTG	2 cut(s)	491, 521
CciI	TCATGA	3 cut(s)	400, 990, 1173
Cfr13I	GGNCC	1 cut(s)	23
ClaI	ATCGAT	1 cut(s)	1075
CsiI	ACCWGGT	1 cut(s)	1371
Csp6I	GTAC	5 cut(s)	66, 164, 1033, 1198, 1300
CviAII	CATG	5 cut(s)	401, 410, 991, 1174, 1225
CviQI	GTAC	5 cut(s)	66, 164, 1033, 1198, 1300
DdeI	CTNAG	6 cut(s)	11, 239, 426, 542, 594, 1287
DraI	TTTAAA	2 cut(s)	132, 624
DraIII	CACNNNGTG	1 cut(s)	506
Eam1104I	CTCTTC	3 cut(s)	46, 259, 337
EarI	CTCTTC	3 cut(s)	46, 259, 337
Eco31I	GGTCTC	1 cut(s)	947
Eco32I	GATATC	1 cut(s)	745
Eco47I	GGWCC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	12
Eco88I	CYCGRG	2 cut(s)	555, 629
EcoNI	CCTNNNNNAGG	1 cut(s)	1142
EcoRI	GAATTC	2 cut(s)	710, 729
EcoRII	CCWGG	2 cut(s)	302, 1371
EcoRV	GATATC	1 cut(s)	745
FaeI	CATG	5 cut(s)	404, 413, 994, 1177, 1228
FalI	AAGNNNNNCTT	2 cut(s)	85, 117
FaqI	GGGAC	1 cut(s)	1065
FatI	CATG	5 cut(s)	400, 409, 990, 1173, 1224
Fnu4HI	GCNGC	4 cut(s)	183, 525, 663, 898
FokI	GGATG	1 cut(s)	869
Fsp4HI	GCNGC	4 cut(s)	183, 525, 663, 898
FspBI	CTAG	3 cut(s)	465, 719, 1182
GluI	GCNGC	4 cut(s)	183, 525, 663, 898
GsaI	CCCAGC	1 cut(s)	881
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	1 cut(s)	818
Hin1II	CATG	5 cut(s)	404, 413, 994, 1177, 1228
HincII	GTYRAC	1 cut(s)	17
HindII	GTYRAC	1 cut(s)	17
HphI	GGTGA	2 cut(s)	425, 521
Hpy166II	GTNNAC	5 cut(s)	17, 87, 539, 1200, 1307
Hpy8I	GTNNAC	5 cut(s)	17, 87, 539, 1200, 1307
HpyAV	CCTTC	4 cut(s)	36, 572, 617, 725
HpyCH4III	ACNGT	4 cut(s)	248, 919, 1001, 1304
HpyCH4IV	ACGT	3 cut(s)	589, 1088, 1446
HpyCH4V	TGCA	4 cut(s)	4, 527, 584, 762
HpyF10VI	GCNNNNNNNGC	1 cut(s)	786
HpyF3I	CTNAG	6 cut(s)	11, 239, 426, 542, 594, 1287
HpySE526I	ACGT	3 cut(s)	589, 1088, 1446
Hsp92II	CATG	5 cut(s)	404, 413, 994, 1177, 1228
LmnI	GCTCC	3 cut(s)	312, 1020, 1190
Lsp1109I	GCAGC	3 cut(s)	194, 511, 649
MabI	ACCWGGT	1 cut(s)	1371
MaeI	CTAG	3 cut(s)	465, 719, 1182
MaeII	ACGT	3 cut(s)	589, 1088, 1446
MaeIII	GTNAC	3 cut(s)	509, 995, 1123
MbiI	CCGCTC	1 cut(s)	548
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	6 cut(s)	710, 729, 1111, 1164, 1392, 1449
MlyI	GAGTC	3 cut(s)	90, 567, 1115
MmeI	TCCRAC	1 cut(s)	1046
MroXI	GAANNNNTTC	2 cut(s)	396, 714
MseI	TTAA	6 cut(s)	131, 212, 263, 623, 1097, 1413
MslI	CAYNNNNRTG	1 cut(s)	775
MspA1I	CMGCKG	1 cut(s)	458
MspR9I	CCNGG	2 cut(s)	304, 1373
MssI	GTTTAAAC	1 cut(s)	624
MvaI	CCWGG	2 cut(s)	304, 1373
MwoI	GCNNNNNNNGC	1 cut(s)	786
NlaIII	CATG	5 cut(s)	404, 413, 994, 1177, 1228
NlaIV	GGNNCC	1 cut(s)	308
NmeAIII	GCCGAG	1 cut(s)	1350
NmuCI	GTSAC	1 cut(s)	509
PaeR7I	CTCGAG	2 cut(s)	555, 629
PagI	TCATGA	3 cut(s)	400, 990, 1173
PdmI	GAANNNNTTC	2 cut(s)	396, 714
PfeI	GAWTC	7 cut(s)	124, 364, 371, 518, 783, 966, 1170
PflMI	CCANNNNNTGG	1 cut(s)	506
PkrI	GCNGC	4 cut(s)	184, 526, 664, 899
PleI	GAGTC	3 cut(s)	90, 566, 1114
PmeI	GTTTAAAC	1 cut(s)	624
PpsI	GAGTC	3 cut(s)	90, 566, 1114
Psp1406I	AACGTT	1 cut(s)	1088
Psp6I	CCWGG	2 cut(s)	302, 1371
PspFI	CCCAGC	1 cut(s)	877
PspGI	CCWGG	2 cut(s)	302, 1371
PspN4I	GGNNCC	1 cut(s)	308
PspPI	GGNCC	1 cut(s)	23
PspXI	VCTCGAGB	1 cut(s)	629
PstI	CTGCAG	1 cut(s)	529
PstNI	CAGNNNCTG	2 cut(s)	491, 521
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	5 cut(s)	67, 165, 1034, 1199, 1301
RsaNI	GTAC	5 cut(s)	66, 164, 1033, 1198, 1300
RseI	CAYNNNNRTG	1 cut(s)	775
SaqAI	TTAA	6 cut(s)	131, 212, 263, 623, 1097, 1413
SatI	GCNGC	4 cut(s)	183, 525, 663, 898
Sau96I	GGNCC	1 cut(s)	23
ScaI	AGTACT	1 cut(s)	1034
SchI	GAGTC	3 cut(s)	90, 567, 1115
ScrFI	CCNGG	2 cut(s)	304, 1373
SduI	GDGCHC	1 cut(s)	76
SexAI	ACCWGGT	1 cut(s)	1371
SfcI	CTRYAG	1 cut(s)	525
Sfr274I	CTCGAG	2 cut(s)	555, 629
SinI	GGWCC	1 cut(s)	23
SlaI	CTCGAG	2 cut(s)	555, 629
SmiMI	CAYNNNNRTG	1 cut(s)	775
SmlI	CTYRAG	4 cut(s)	359, 555, 629, 824
SmoI	CTYRAG	4 cut(s)	359, 555, 629, 824
Sse9I	AATT	6 cut(s)	710, 729, 1111, 1164, 1392, 1449
SsiI	CCGC	4 cut(s)	548, 780, 898, 1061
SspMI	CTAG	3 cut(s)	465, 719, 1182
StyD4I	CCNGG	2 cut(s)	302, 1371
TaaI	ACNGT	4 cut(s)	248, 919, 1001, 1304
TaiI	ACGT	3 cut(s)	592, 1091, 1449
TasI	AATT	6 cut(s)	710, 729, 1111, 1164, 1392, 1449
TatI	WGTACW	2 cut(s)	1032, 1197
TauI	GCSGC	1 cut(s)	900
TfiI	GAWTC	7 cut(s)	124, 364, 371, 518, 783, 966, 1170
Tru1I	TTAA	6 cut(s)	131, 212, 263, 623, 1097, 1413
Tru9I	TTAA	6 cut(s)	131, 212, 263, 623, 1097, 1413
TscAI	CASTG	1 cut(s)	1006
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	3 cut(s)	182, 524, 662
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	7 cut(s)	274, 308, 389, 417, 468, 1176, 1442
TspGWI	ACGGA	1 cut(s)	1007
TspRI	CASTG	1 cut(s)	1006
Van91I	CCANNNNNTGG	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	23
XagI	CCTNNNNNAGG	1 cut(s)	1142
XapI	RAATTY	3 cut(s)	710, 729, 1111
XbaI	TCTAGA	2 cut(s)	718, 1181
XhoI	CTCGAG	2 cut(s)	555, 629
XmnI	GAANNNNTTC	2 cut(s)	396, 714
XspI	CTAG	3 cut(s)	465, 719, 1182
ZrmI	AGTACT	1 cut(s)	1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.