RLG00000022300
ERF Family

mTERF

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
82386085 .. 82388369
2285 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022300

Sequence Viewer

Length: 1515 bp
ATGAAAGCTTTCTGCGCCATACGGGTCGCCGACTTTGCTTCTCCTCTGCAAGTCTTATTCAGCACCGGAAGGTGTTGCAATGTGAATGATTCAAGTTTCAAGTTGACGTATCATTACCCACTGAAGCTTGTGAGGACGAGACTTGCTTTCCCTCAAAAGCTCTTTATCTGTCGGGCGAGGTTTGCGGACTCTGGGGTGGAAGGGTCATTTAGCTTAAAATTGGTATCTCCAGCTCTTTTAACGGCTGAGAAAGAAGAAGCCAAAGCTGTCCTAACCTTGTTCTTGAAGAAACAAGGTCTCAGCCATACAATTGCTGCGAGAACCATAAACAAGTCGGAGCTTTTCATTGATCACCTTGTTGCTAGGCTTCATTCTGTTCATAAATCCCGGTATCTAGTAGGACGGGAGCTAACCACTCTTGAGATAAGGGAGGCTCTGATCCCTTACCTTGAATCCCTTCTAGAGGAGCATGGAATTTATATGGTAGATGTGGTGGAAAGCTTTCCAGATCCACCAGTTAAAGCAAAGCCAGCTGCACCAGTTACTAAATCTCAGTCATCTGTTGACTTAAAGAAGTTGAGAGCCATATCTAGAGTAAGTGAGATAGGCCCAGCTGGGAAGCTCCCACCTCACATCCTATACCTTTTAGAGCTTGGAATGGATCTTGATCAAATAAAGGGTATTGCACGCAGATTTCCATCTTTTGCCTACTACAGTTTGGAGGGAAAAATAAAACCAACTGTCGAGTTTCTCCTTGATCTTGGGGTCCCAAAATCTGATATTCCTACAATCCTCTTTAAGAGGCCTCAGCTGTGCGGAATCAGTCTTTATGAAAATATTATGCCCACCATGAGATTCTTAGAAAACCTAGGTGTGGACAAGAAACAGTGGGCAAAAGTGATATACCGCTTTCCAGCCCTCCTCACATATAGTAGGCAGAAGGTGAAAACAACAGTCGATTTCCTCTATGAAATGGGCCTTTCAGAAGAGATCATAGGTAAGGTTTTGACGAGGTGCCCGAACATTATAAGTTACAGTGTCGAGGAGAAGTTACGGCCCACAGCTGAATACTTTTCCTCCCTGGGGGTGGATGTTGGTGTTCTTCTAAGTCGATCTCCCACAGTTTTTGGCCTTAGTATTGAGGCCAACTTGAAGCCTGTGACAGAGTTTTTCCATGGAAGGGGATATACTATGGAGGAAATTGGAACCATGATTTCAAGGTATGGAGCTTTATATACTTTCAGCTTGACAGAGAACTTGATGCCAAAATGGGAGTTCTTTTTGACCATGGATTATTCAAAATCAGAGCTGGTTAAATTCCCTCAATACTTTGGTTATAGTTTGGTAGAAAGGATTAAACCAAGATATGCACTTATGAAGGAATGTGGAGTAATGTTACTATTGAACCAGTTGTTATCACTATCGGCCGCTAACTTTGATAAGGCTCTTAAAAAGAAAATTGAGAAAGTGGCTGCTGCCAATGGTGACGATCCTGACACAGATGTTGAAATATGA

Protein Analysis

505

Amino Acids

56.85

Weight (kDa)

9.06

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 76 - 323 3.8e-20 mTERF
mTERF PF02536 313 - 479 1.7e-30 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012380)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1028
AccB1I GGYRCC 1 cut(s) 1014
AciI CCGC 4 cut(s) 185, 816, 907, 1428
AclWI GGATC 4 cut(s) 433, 503, 669, 1484
AcoI YGGCCR 1 cut(s) 1425
AcsI RAATTY 2 cut(s) 474, 1316
AcuI CTGAAG 1 cut(s) 143
AfiI CCNNNNNNNGG 5 cut(s) 463, 874, 1083, 1087, 1180
AgsI TTSAA 9 cut(s) 93, 100, 286, 452, 1153, 1218, 1299, 1405, 1508
AjnI CCWGG 1 cut(s) 1080
Alw26I GTCTC 2 cut(s) 133, 302
AlwI GGATC 4 cut(s) 433, 503, 669, 1484
AoxI GGCC 7 cut(s) 607, 803, 976, 1055, 1129, 1143, 1425
ApeKI GCWGC 4 cut(s) 314, 533, 1472, 1475
ApoI RAATTY 2 cut(s) 474, 1316
Asp700I GAANNNNTTC 3 cut(s) 8, 456, 501
AspA2I CCTAGG 1 cut(s) 868
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 4 cut(s) 608, 766, 976, 1056
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 3 cut(s) 344, 955, 1496
AvaII GGWCC 1 cut(s) 766
AvrII CCTAGG 1 cut(s) 868
BaeGI GKGCMC 1 cut(s) 1019
BanI GGYRCC 1 cut(s) 1014
BarI GAAGNNNNNNTAC 2 cut(s) 1171, 1203
BbvCI CCTCAGC 1 cut(s) 807
BbvI GCAGC 4 cut(s) 301, 520, 1459, 1462
BccI CCATC 1 cut(s) 706
BceAI ACGGC 2 cut(s) 258, 1070
BciT130I CCWGG 1 cut(s) 1082
BclI TGATCA 2 cut(s) 349, 667
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 2 cut(s) 133, 302
BfaI CTAG 5 cut(s) 363, 395, 461, 591, 869
BfmI CTRYAG 1 cut(s) 712
BisI GCNGC 5 cut(s) 315, 534, 1428, 1473, 1476
BlnI CCTAGG 1 cut(s) 868
BlsI GCNGC 5 cut(s) 316, 535, 1429, 1474, 1477
Bme1390I CCNGG 2 cut(s) 388, 1082
Bme18I GGWCC 1 cut(s) 766
BmgT120I GGNCC 4 cut(s) 608, 766, 976, 1056
BmiI GGNNCC 4 cut(s) 767, 768, 1016, 1207
BmrFI CCNGG 2 cut(s) 388, 1082
BmsI GCATC 1 cut(s) 1251
BpmI CTGGAG 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 807
BpuEI CTTGAG 1 cut(s) 440
BpuMI CCSGG 1 cut(s) 388
BsaBI GATNNNNATC 2 cut(s) 666, 697
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 5 cut(s) 868, 1080, 1081, 1174, 1287
BsaWI WCCGGW 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 1061, 1091
Bsc4I CCNNNNNNNGG 5 cut(s) 463, 874, 1083, 1087, 1180
Bse1I ACTGG 3 cut(s) 515, 539, 1408
Bse3DI GCAATG 1 cut(s) 85
Bse8I GATNNNNATC 2 cut(s) 666, 697
BseBI CCWGG 1 cut(s) 1082
BseDI CCNNGG 5 cut(s) 868, 1080, 1081, 1174, 1287
BseGI GGATG 2 cut(s) 633, 1096
BseJI GATNNNNATC 2 cut(s) 666, 697
BseLI CCNNNNNNNGG 5 cut(s) 463, 874, 1083, 1087, 1180
BseMI GCAATG 1 cut(s) 85
BseMII CTCAG 4 cut(s) 237, 313, 566, 821
BseNI ACTGG 3 cut(s) 515, 539, 1408
BseRI GAGGAG 4 cut(s) 33, 479, 911, 1058
BseSI GKGCMC 1 cut(s) 1019
BseX3I CGGCCG 1 cut(s) 1425
BseXI GCAGC 4 cut(s) 301, 520, 1459, 1462
BseYI CCCAGC 2 cut(s) 610, 614
BsgI GTGCAG 1 cut(s) 519
Bsh1285I CGRYCG 1 cut(s) 1428
BshFI GGCC 7 cut(s) 609, 805, 978, 1057, 1131, 1145, 1427
BshNI GGYRCC 1 cut(s) 1014
BsiEI CGRYCG 1 cut(s) 1428
BsiSI CCGG 2 cut(s) 66, 388
BslFI GGGAC 1 cut(s) 752
BslI CCNNNNNNNGG 5 cut(s) 463, 874, 1083, 1087, 1180
BsmAI GTCTC 2 cut(s) 133, 302
BsmFI GGGAC 1 cut(s) 752
BsnI GGCC 7 cut(s) 609, 805, 978, 1057, 1131, 1145, 1427
Bso31I GGTCTC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 1019
Bsp143I GATC 9 cut(s) 349, 438, 508, 661, 667, 757, 990, 1112, 1489
Bsp19I CCATGG 2 cut(s) 1174, 1287
BspACI CCGC 4 cut(s) 185, 816, 907, 1428
BspANI GGCC 7 cut(s) 609, 805, 978, 1057, 1131, 1145, 1427
BspCNI CTCAG 4 cut(s) 238, 312, 565, 820
BspLI GGNNCC 4 cut(s) 767, 768, 1016, 1207
BspPI GGATC 4 cut(s) 433, 503, 669, 1484
BspT107I GGYRCC 1 cut(s) 1014
BspTNI GGTCTC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 85
BsrI ACTGG 3 cut(s) 515, 539, 1408
BssECI CCNNGG 5 cut(s) 868, 1080, 1081, 1174, 1287
BssMI GATC 9 cut(s) 349, 438, 508, 661, 667, 757, 990, 1112, 1489
BssT1I CCWWGG 3 cut(s) 868, 1174, 1287
Bst2UI CCWGG 1 cut(s) 1082
Bst4CI ACNGT 6 cut(s) 716, 742, 888, 955, 1037, 1123
Bst6I CTCTTC 1 cut(s) 981
BstC8I GCNNGC 2 cut(s) 531, 688
BstDEI CTNAG 7 cut(s) 246, 299, 552, 807, 859, 1106, 1133
BstDSI CCRYGG 2 cut(s) 1174, 1287
BstENI CCTNNNNNAGG 1 cut(s) 461
BstF5I GGATG 2 cut(s) 633, 1096
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 9 cut(s) 352, 441, 511, 664, 670, 760, 993, 1115, 1492
BstMAI GTCTC 2 cut(s) 133, 302
BstMBI GATC 9 cut(s) 349, 438, 508, 661, 667, 757, 990, 1112, 1489
BstMCI CGRYCG 1 cut(s) 1428
BstMWI GCNNNNNNNGC 4 cut(s) 14, 35, 182, 530
BstNI CCWGG 1 cut(s) 1082
BstSCI CCNGG 2 cut(s) 386, 1080
BstSFI CTRYAG 1 cut(s) 712
BstSLI GKGCMC 1 cut(s) 1019
BstV1I GCAGC 4 cut(s) 301, 520, 1459, 1462
BstX2I RGATCY 2 cut(s) 508, 661
BstYI RGATCY 2 cut(s) 508, 661
BstZI CGGCCG 1 cut(s) 1425
BsuRI GGCC 7 cut(s) 609, 805, 978, 1057, 1131, 1145, 1427
BtgI CCRYGG 2 cut(s) 1174, 1287
BtsCI GGATG 2 cut(s) 633, 1096
BtsIMutI CAGTG 3 cut(s) 119, 893, 1042
Cac8I GCNNGC 2 cut(s) 531, 688
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 4 cut(s) 608, 766, 976, 1056
CspCI CAANNNNNGTGG 2 cut(s) 1108, 1143
CviAII CATG 5 cut(s) 470, 850, 1175, 1210, 1288
DdeI CTNAG 7 cut(s) 246, 299, 552, 807, 859, 1106, 1133
DpnI GATC 9 cut(s) 351, 440, 510, 663, 669, 759, 992, 1114, 1491
DpnII GATC 9 cut(s) 349, 438, 508, 661, 667, 757, 990, 1112, 1489
EaeI YGGCCR 1 cut(s) 1425
EagI CGGCCG 1 cut(s) 1425
Eam1104I CTCTTC 1 cut(s) 981
EarI CTCTTC 1 cut(s) 981
EclXI CGGCCG 1 cut(s) 1425
Eco130I CCWWGG 3 cut(s) 868, 1174, 1287
Eco147I AGGCCT 1 cut(s) 805
Eco31I GGTCTC 1 cut(s) 302
Eco47I GGWCC 1 cut(s) 766
Eco52I CGGCCG 1 cut(s) 1425
Eco57I CTGAAG 1 cut(s) 143
EcoNI CCTNNNNNAGG 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 766
EcoRII CCWGG 1 cut(s) 1080
EcoT14I CCWWGG 3 cut(s) 868, 1174, 1287
ErhI CCWWGG 3 cut(s) 868, 1174, 1287
FaeI CATG 5 cut(s) 473, 853, 1178, 1213, 1291
FaqI GGGAC 1 cut(s) 752
FatI CATG 5 cut(s) 469, 849, 1174, 1209, 1287
FbaI TGATCA 2 cut(s) 349, 667
Fnu4HI GCNGC 5 cut(s) 315, 534, 1428, 1473, 1476
FokI GGATG 2 cut(s) 620, 1103
Fsp4HI GCNGC 5 cut(s) 315, 534, 1428, 1473, 1476
FspBI CTAG 5 cut(s) 363, 395, 461, 591, 869
GlaI GCGC 1 cut(s) 16
GluI GCNGC 5 cut(s) 315, 534, 1428, 1473, 1476
GsaI CCCAGC 2 cut(s) 614, 618
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 7 cut(s) 609, 805, 978, 1057, 1131, 1145, 1427
HapII CCGG 2 cut(s) 66, 388
HhaI GCGC 1 cut(s) 17
Hin1II CATG 5 cut(s) 473, 853, 1178, 1213, 1291
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HincII GTYRAC 2 cut(s) 105, 565
HindII GTYRAC 2 cut(s) 105, 565
HindIII AAGCTT 3 cut(s) 6, 125, 499
HinfI GANTC 5 cut(s) 89, 188, 452, 819, 855
HpaII CCGG 2 cut(s) 66, 388
HphI GGTGA 3 cut(s) 344, 955, 1496
Hpy166II GTNNAC 3 cut(s) 105, 565, 877
Hpy188I TCNGA 5 cut(s) 337, 438, 778, 985, 1306
Hpy188III TCNNGA 7 cut(s) 283, 419, 461, 506, 591, 665, 1493
Hpy8I GTNNAC 3 cut(s) 105, 565, 877
HpyAV CCTTC 6 cut(s) 63, 194, 467, 934, 1173, 1372
HpyCH4III ACNGT 6 cut(s) 716, 742, 888, 955, 1037, 1123
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 5 cut(s) 49, 78, 536, 686, 1370
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 35, 182, 530
HpyF3I CTNAG 7 cut(s) 246, 299, 552, 807, 859, 1106, 1133
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 5 cut(s) 473, 853, 1178, 1213, 1291
HspAI GCGC 1 cut(s) 15
KflI GGGWCCC 1 cut(s) 766
Ksp22I TGATCA 2 cut(s) 349, 667
Kzo9I GATC 9 cut(s) 349, 438, 508, 661, 667, 757, 990, 1112, 1489
LmnI GCTCC 5 cut(s) 337, 406, 466, 627, 1226
Lsp1109I GCAGC 4 cut(s) 301, 520, 1459, 1462
LweI GCATC 1 cut(s) 1251
MaeI CTAG 5 cut(s) 363, 395, 461, 591, 869
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 6 cut(s) 541, 1031, 1050, 1159, 1395, 1484
MalI GATC 9 cut(s) 351, 440, 510, 663, 669, 759, 992, 1114, 1491
MboI GATC 9 cut(s) 349, 438, 508, 661, 667, 757, 990, 1112, 1489
MboII GAAGA 4 cut(s) 266, 298, 998, 1094
MfeI CAATTG 1 cut(s) 309
MflI RGATCY 2 cut(s) 508, 661
MhlI GDGCHC 1 cut(s) 1019
MluCI AATT 6 cut(s) 218, 309, 474, 1200, 1316, 1458
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 315
MroXI GAANNNNTTC 3 cut(s) 8, 456, 501
MseI TTAA 8 cut(s) 215, 239, 519, 569, 798, 1314, 1356, 1449
MspA1I CMGCKG 4 cut(s) 533, 614, 811, 1064
MspI CCGG 2 cut(s) 66, 388
MspR9I CCNGG 2 cut(s) 388, 1082
MunI CAATTG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 1082
MwoI GCNNNNNNNGC 4 cut(s) 14, 35, 182, 530
NciI CCSGG 1 cut(s) 388
NcoI CCATGG 2 cut(s) 1174, 1287
NdeII GATC 9 cut(s) 349, 438, 508, 661, 667, 757, 990, 1112, 1489
NlaIII CATG 5 cut(s) 473, 853, 1178, 1213, 1291
NlaIV GGNNCC 4 cut(s) 767, 768, 1016, 1207
NmuCI GTSAC 2 cut(s) 1159, 1484
PasI CCCWGGG 1 cut(s) 1081
PceI AGGCCT 1 cut(s) 805
PcsI WCGNNNNNNNCGW 1 cut(s) 1016
PdmI GAANNNNTTC 3 cut(s) 8, 456, 501
PfeI GAWTC 4 cut(s) 89, 452, 819, 855
PkrI GCNGC 5 cut(s) 316, 535, 1429, 1474, 1477
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PpuMI RGGWCCY 1 cut(s) 766
PsiI TTATAA 1 cut(s) 1028
Psp5II RGGWCCY 1 cut(s) 766
Psp6I CCWGG 1 cut(s) 1080
PspFI CCCAGC 2 cut(s) 610, 614
PspGI CCWGG 1 cut(s) 1080
PspN4I GGNNCC 4 cut(s) 767, 768, 1016, 1207
PspPI GGNCC 4 cut(s) 608, 766, 976, 1056
PspPPI RGGWCCY 1 cut(s) 766
PsuI RGATCY 2 cut(s) 508, 661
PvuII CAGCTG 4 cut(s) 533, 614, 811, 1064
SaqAI TTAA 8 cut(s) 215, 239, 519, 569, 798, 1314, 1356, 1449
SatI GCNGC 5 cut(s) 315, 534, 1428, 1473, 1476
Sau3AI GATC 9 cut(s) 349, 438, 508, 661, 667, 757, 990, 1112, 1489
Sau96I GGNCC 4 cut(s) 608, 766, 976, 1056
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 2 cut(s) 388, 1082
SduI GDGCHC 1 cut(s) 1019
SfaNI GCATC 1 cut(s) 1251
SfcI CTRYAG 1 cut(s) 712
SinI GGWCC 1 cut(s) 766
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 6 cut(s) 218, 309, 474, 1200, 1316, 1458
SseBI AGGCCT 1 cut(s) 805
SsiI CCGC 4 cut(s) 185, 816, 907, 1428
SspI AATATT 1 cut(s) 838
SspMI CTAG 5 cut(s) 363, 395, 461, 591, 869
StuI AGGCCT 1 cut(s) 805
StyD4I CCNGG 2 cut(s) 386, 1080
StyI CCWWGG 3 cut(s) 868, 1174, 1287
TaaI ACNGT 6 cut(s) 716, 742, 888, 955, 1037, 1123
TaiI ACGT 1 cut(s) 110
TaqI TCGA 4 cut(s) 744, 957, 1041, 1111
TasI AATT 6 cut(s) 218, 309, 474, 1200, 1316, 1458
TauI GCSGC 1 cut(s) 1430
TfiI GAWTC 4 cut(s) 89, 452, 819, 855
Tru1I TTAA 8 cut(s) 215, 239, 519, 569, 798, 1314, 1356, 1449
Tru9I TTAA 8 cut(s) 215, 239, 519, 569, 798, 1314, 1356, 1449
TscAI CASTG 3 cut(s) 126, 893, 1042
TseFI GTSAC 2 cut(s) 1159, 1484
TseI GCWGC 4 cut(s) 314, 533, 1472, 1475
Tsp45I GTSAC 2 cut(s) 1159, 1484
TspDTI ATGAA 7 cut(s) 17, 334, 359, 368, 846, 984, 1391
TspRI CASTG 3 cut(s) 126, 893, 1042
VpaK11BI GGWCC 1 cut(s) 766
XagI CCTNNNNNAGG 1 cut(s) 461
XapI RAATTY 2 cut(s) 474, 1316
XbaI TCTAGA 2 cut(s) 460, 590
XmaJI CCTAGG 1 cut(s) 868
XmnI GAANNNNTTC 3 cut(s) 8, 456, 501
XspI CTAG 5 cut(s) 363, 395, 461, 591, 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.