mTERF
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14605 AT4G14605 |
| fragaria_vesca | FvH4_6g53060 FvH4_6g53060 |
| malus_domestica | MD17G1015100.v1.1 |
| prunus_persica | Prupe.3G302700_v2.0.a1 Prupe.3G302700_v2.0.a1 Prupe.3G302700_v2.0.a1 Prupe.3G302700_v2.0.a1 |
| pyrus_communis | pycom17g01220 |
| rosa_chinensis | RchiOBHm_Chr2g0174841 |
| rosa_laevigata | RLG00000022300 |
| rosa_roxburghii | Rroxscaffold_2G00077650 |
| rosa_rugosa | Rorug02G0579700 |
| rosa_samantha | Rh2AG661000 Rh2BG672400 Rh2CG635200 Rh2DG685500 |
| rosa_wichuraiana | Rw2G054170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 965 |
| AccB1I | GGYRCC | 1 cut(s) | 703 |
| AccII | CGCG | 2 cut(s) | 38, 625 |
| AciI | CCGC | 1 cut(s) | 38 |
| AclWI | GGATC | 5 cut(s) | 35, 48, 606, 1151, 1415 |
| AcoI | YGGCCR | 1 cut(s) | 992 |
| AcsI | RAATTY | 4 cut(s) | 790, 1103, 1192, 1253 |
| AcuI | CTGAAG | 1 cut(s) | 1162 |
| AfaI | GTAC | 1 cut(s) | 1007 |
| AfeI | AGCGCT | 1 cut(s) | 855 |
| AgeI | ACCGGT | 1 cut(s) | 843 |
| AgsI | TTSAA | 5 cut(s) | 223, 1079, 1090, 1155, 1460 |
| AjnI | CCWGG | 1 cut(s) | 68 |
| Alw21I | GWGCWC | 2 cut(s) | 291, 930 |
| Alw26I | GTCTC | 1 cut(s) | 1073 |
| AlwI | GGATC | 5 cut(s) | 35, 48, 606, 1151, 1415 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 251 |
| Ama87I | CYCGRG | 1 cut(s) | 528 |
| Aor51HI | AGCGCT | 1 cut(s) | 855 |
| AoxI | GGCC | 6 cut(s) | 232, 519, 544, 740, 913, 992 |
| ApeKI | GCWGC | 5 cut(s) | 179, 251, 951, 1333, 1336 |
| ApoI | RAATTY | 4 cut(s) | 790, 1103, 1192, 1253 |
| AsiGI | ACCGGT | 1 cut(s) | 843 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 393, 438 |
| AspLEI | GCGC | 3 cut(s) | 625, 627, 856 |
| AspS9I | GGNCC | 2 cut(s) | 545, 913 |
| AsuC2I | CCSGG | 3 cut(s) | 130, 325, 548 |
| AsuHPI | GGTGA | 2 cut(s) | 892, 1339 |
| AvaI | CYCGRG | 1 cut(s) | 528 |
| BamHI | GGATCC | 1 cut(s) | 40 |
| BanI | GGYRCC | 1 cut(s) | 703 |
| BanII | GRGCYC | 1 cut(s) | 930 |
| BbsI | GAAGAC | 1 cut(s) | 890 |
| Bbv12I | GWGCWC | 2 cut(s) | 291, 930 |
| BbvCI | CCTCAGC | 2 cut(s) | 236, 744 |
| BbvI | GCAGC | 5 cut(s) | 191, 238, 938, 1320, 1323 |
| BccI | CCATC | 2 cut(s) | 131, 1053 |
| BceAI | ACGGC | 1 cut(s) | 1007 |
| BciT130I | CCWGG | 1 cut(s) | 70 |
| BciVI | GTATCC | 1 cut(s) | 1115 |
| BclI | TGATCA | 1 cut(s) | 604 |
| BcnI | CCSGG | 3 cut(s) | 130, 325, 548 |
| BcoDI | GTCTC | 1 cut(s) | 1073 |
| BfaI | CTAG | 4 cut(s) | 75, 198, 300, 332 |
| BfmI | CTRYAG | 1 cut(s) | 1273 |
| BfoI | RGCGCY | 1 cut(s) | 857 |
| BfuI | GTATCC | 1 cut(s) | 1115 |
| BglII | AGATCT | 1 cut(s) | 802 |
| BisI | GCNGC | 5 cut(s) | 180, 252, 952, 1334, 1337 |
| BlsI | GCNGC | 5 cut(s) | 181, 253, 953, 1335, 1338 |
| BmcAI | AGTACT | 1 cut(s) | 1007 |
| Bme1390I | CCNGG | 4 cut(s) | 70, 130, 325, 548 |
| BmeT110I | CYCGRG | 1 cut(s) | 528 |
| BmgT120I | GGNCC | 2 cut(s) | 545, 913 |
| BmiI | GGNNCC | 2 cut(s) | 42, 705 |
| BmrFI | CCNGG | 4 cut(s) | 70, 130, 325, 548 |
| BpiI | GAAGAC | 1 cut(s) | 890 |
| BpmI | CTGGAG | 1 cut(s) | 150 |
| Bpu10I | CCTNAGC | 2 cut(s) | 236, 744 |
| BpuEI | CTTGAG | 1 cut(s) | 377 |
| BpuMI | CCSGG | 3 cut(s) | 130, 325, 548 |
| BsaBI | GATNNNNATC | 1 cut(s) | 603 |
| BsaI | GGTCTC | 1 cut(s) | 1073 |
| BsaJI | CCNNGG | 2 cut(s) | 1224, 1298 |
| BsaWI | WCCGGW | 1 cut(s) | 843 |
| Bse118I | RCCGGY | 1 cut(s) | 843 |
| Bse1I | ACTGG | 5 cut(s) | 162, 467, 476, 1345, 1369 |
| Bse8I | GATNNNNATC | 1 cut(s) | 603 |
| BseBI | CCWGG | 1 cut(s) | 70 |
| BseDI | CCNNGG | 2 cut(s) | 1224, 1298 |
| BseGI | GGATG | 1 cut(s) | 1033 |
| BseJI | GATNNNNATC | 1 cut(s) | 603 |
| BseMII | CTCAG | 4 cut(s) | 250, 758, 993, 1084 |
| BseNI | ACTGG | 5 cut(s) | 162, 467, 476, 1345, 1369 |
| BsePI | GCGCGC | 1 cut(s) | 623 |
| BseXI | GCAGC | 5 cut(s) | 191, 238, 938, 1320, 1323 |
| BseYI | CCCAGC | 1 cut(s) | 551 |
| Bsh1236I | CGCG | 2 cut(s) | 38, 625 |
| BshFI | GGCC | 6 cut(s) | 234, 521, 546, 742, 915, 994 |
| BshNI | GGYRCC | 1 cut(s) | 703 |
| BshTI | ACCGGT | 1 cut(s) | 843 |
| BsiHKAI | GWGCWC | 2 cut(s) | 291, 930 |
| BsiHKCI | CYCGRG | 1 cut(s) | 528 |
| BsiSI | CCGG | 4 cut(s) | 129, 325, 548, 844 |
| BsmAI | GTCTC | 1 cut(s) | 1073 |
| BsnI | GGCC | 6 cut(s) | 234, 521, 546, 742, 915, 994 |
| Bso31I | GGTCTC | 1 cut(s) | 1073 |
| BsoBI | CYCGRG | 1 cut(s) | 528 |
| Bsp1286I | GDGCHC | 2 cut(s) | 291, 930 |
| Bsp143I | GATC | 8 cut(s) | 40, 294, 598, 604, 802, 1143, 1420, 1441 |
| Bsp19I | CCATGG | 1 cut(s) | 1224 |
| BspACI | CCGC | 1 cut(s) | 38 |
| BspANI | GGCC | 6 cut(s) | 234, 521, 546, 742, 915, 994 |
| BspCNI | CTCAG | 4 cut(s) | 249, 757, 994, 1083 |
| BspFNI | CGCG | 2 cut(s) | 38, 625 |
| BspLI | GGNNCC | 2 cut(s) | 42, 705 |
| BspPI | GGATC | 5 cut(s) | 35, 48, 606, 1151, 1415 |
| BspT107I | GGYRCC | 1 cut(s) | 703 |
| BspTNI | GGTCTC | 1 cut(s) | 1073 |
| BsrFI | RCCGGY | 1 cut(s) | 843 |
| BsrI | ACTGG | 5 cut(s) | 162, 467, 476, 1345, 1369 |
| BssAI | RCCGGY | 1 cut(s) | 843 |
| BssECI | CCNNGG | 2 cut(s) | 1224, 1298 |
| BssHII | GCGCGC | 1 cut(s) | 623 |
| BssMI | GATC | 8 cut(s) | 40, 294, 598, 604, 802, 1143, 1420, 1441 |
| BssT1I | CCWWGG | 2 cut(s) | 1224, 1298 |
| Bst2UI | CCWGG | 1 cut(s) | 70 |
| Bst4CI | ACNGT | 3 cut(s) | 247, 974, 1127 |
| BstC8I | GCNNGC | 1 cut(s) | 625 |
| BstDEI | CTNAG | 5 cut(s) | 236, 744, 796, 1002, 1070 |
| BstDSI | CCRYGG | 1 cut(s) | 1224 |
| BstF5I | GGATG | 1 cut(s) | 1033 |
| BstFNI | CGCG | 2 cut(s) | 38, 625 |
| BstH2I | RGCGCY | 1 cut(s) | 857 |
| BstHHI | GCGC | 3 cut(s) | 625, 627, 856 |
| BstKTI | GATC | 8 cut(s) | 43, 297, 601, 607, 805, 1146, 1423, 1444 |
| BstMAI | GTCTC | 1 cut(s) | 1073 |
| BstMBI | GATC | 8 cut(s) | 40, 294, 598, 604, 802, 1143, 1420, 1441 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 14, 35, 119, 147, 176 |
| BstNI | CCWGG | 1 cut(s) | 70 |
| BstSCI | CCNGG | 4 cut(s) | 68, 128, 323, 546 |
| BstSFI | CTRYAG | 1 cut(s) | 1273 |
| BstUI | CGCG | 2 cut(s) | 38, 625 |
| BstV1I | GCAGC | 5 cut(s) | 191, 238, 938, 1320, 1323 |
| BstV2I | GAAGAC | 1 cut(s) | 890 |
| BstX2I | RGATCY | 4 cut(s) | 40, 598, 802, 1420 |
| BstYI | RGATCY | 4 cut(s) | 40, 598, 802, 1420 |
| BsuI | GTATCC | 1 cut(s) | 1115 |
| BsuRI | GGCC | 6 cut(s) | 234, 521, 546, 742, 915, 994 |
| BtgI | CCRYGG | 1 cut(s) | 1224 |
| BtsCI | GGATG | 1 cut(s) | 1033 |
| BtsI | GCAGTG | 1 cut(s) | 1441 |
| BtsIMutI | CAGTG | 2 cut(s) | 979, 1441 |
| Cac8I | GCNNGC | 1 cut(s) | 625 |
| CaiI | CAGNNNCTG | 1 cut(s) | 251 |
| CfoI | GCGC | 3 cut(s) | 625, 627, 856 |
| Cfr10I | RCCGGY | 1 cut(s) | 843 |
| Cfr13I | GGNCC | 2 cut(s) | 545, 913 |
| Csp6I | GTAC | 1 cut(s) | 1006 |
| CspAI | ACCGGT | 1 cut(s) | 843 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1045, 1080 |
| CviAII | CATG | 6 cut(s) | 308, 407, 595, 787, 1147, 1225 |
| CviQI | GTAC | 1 cut(s) | 1006 |
| DdeI | CTNAG | 5 cut(s) | 236, 744, 796, 1002, 1070 |
| DpnI | GATC | 8 cut(s) | 42, 296, 600, 606, 804, 1145, 1422, 1443 |
| DpnII | GATC | 8 cut(s) | 40, 294, 598, 604, 802, 1143, 1420, 1441 |
| DraI | TTTAAA | 1 cut(s) | 507 |
| EaeI | YGGCCR | 1 cut(s) | 992 |
| Ecl136II | GAGCTC | 1 cut(s) | 928 |
| Eco130I | CCWWGG | 2 cut(s) | 1224, 1298 |
| Eco147I | AGGCCT | 2 cut(s) | 234, 742 |
| Eco24I | GRGCYC | 1 cut(s) | 930 |
| Eco31I | GGTCTC | 1 cut(s) | 1073 |
| Eco47III | AGCGCT | 1 cut(s) | 855 |
| Eco53kI | GAGCTC | 1 cut(s) | 928 |
| Eco57I | CTGAAG | 1 cut(s) | 1162 |
| Eco88I | CYCGRG | 1 cut(s) | 528 |
| EcoICRI | GAGCTC | 1 cut(s) | 928 |
| EcoRII | CCWGG | 1 cut(s) | 68 |
| EcoT14I | CCWWGG | 2 cut(s) | 1224, 1298 |
| EcoT38I | GRGCYC | 1 cut(s) | 930 |
| ErhI | CCWWGG | 2 cut(s) | 1224, 1298 |
| FaeI | CATG | 6 cut(s) | 311, 410, 598, 790, 1150, 1228 |
| FatI | CATG | 6 cut(s) | 307, 406, 594, 786, 1146, 1224 |
| FbaI | TGATCA | 1 cut(s) | 604 |
| Fnu4HI | GCNGC | 5 cut(s) | 180, 252, 952, 1334, 1337 |
| FokI | GGATG | 1 cut(s) | 1040 |
| FriOI | GRGCYC | 1 cut(s) | 930 |
| Fsp4HI | GCNGC | 5 cut(s) | 180, 252, 952, 1334, 1337 |
| FspBI | CTAG | 4 cut(s) | 75, 198, 300, 332 |
| GlaI | GCGC | 3 cut(s) | 624, 626, 855 |
| GluI | GCNGC | 5 cut(s) | 180, 252, 952, 1334, 1337 |
| GsaI | CCCAGC | 1 cut(s) | 555 |
| GsuI | CTGGAG | 1 cut(s) | 150 |
| HaeII | RGCGCY | 1 cut(s) | 857 |
| HaeIII | GGCC | 6 cut(s) | 234, 521, 546, 742, 915, 994 |
| HapII | CCGG | 4 cut(s) | 129, 325, 548, 844 |
| HhaI | GCGC | 3 cut(s) | 625, 627, 856 |
| Hin1II | CATG | 6 cut(s) | 311, 410, 598, 790, 1150, 1228 |
| Hin6I | GCGC | 3 cut(s) | 623, 625, 854 |
| HinP1I | GCGC | 3 cut(s) | 623, 625, 854 |
| HindIII | AAGCTT | 2 cut(s) | 6, 436 |
| HinfI | GANTC | 3 cut(s) | 125, 389, 756 |
| HpaII | CCGG | 4 cut(s) | 129, 325, 548, 844 |
| HphI | GGTGA | 2 cut(s) | 892, 1339 |
| Hpy166II | GTNNAC | 1 cut(s) | 814 |
| Hpy188I | TCNGA | 6 cut(s) | 48, 274, 715, 769, 1243, 1453 |
| Hpy188III | TCNNGA | 7 cut(s) | 220, 356, 398, 528, 602, 692, 1155 |
| Hpy8I | GTNNAC | 1 cut(s) | 814 |
| HpyAV | CCTTC | 4 cut(s) | 404, 871, 1186, 1309 |
| HpyCH4III | ACNGT | 3 cut(s) | 247, 974, 1127 |
| HpyCH4V | TGCA | 4 cut(s) | 254, 449, 473, 1307 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 14, 35, 119, 147, 176 |
| HpyF3I | CTNAG | 5 cut(s) | 236, 744, 796, 1002, 1070 |
| Hsp92II | CATG | 6 cut(s) | 311, 410, 598, 790, 1150, 1228 |
| HspAI | GCGC | 3 cut(s) | 623, 625, 854 |
| Ksp22I | TGATCA | 1 cut(s) | 604 |
| Kzo9I | GATC | 8 cut(s) | 40, 294, 598, 604, 802, 1143, 1420, 1441 |
| LmnI | GCTCC | 3 cut(s) | 564, 1047, 1163 |
| Lsp1109I | GCAGC | 5 cut(s) | 191, 238, 938, 1320, 1323 |
| MaeI | CTAG | 4 cut(s) | 75, 198, 300, 332 |
| MaeIII | GTNAC | 5 cut(s) | 478, 968, 987, 1096, 1367 |
| MalI | GATC | 8 cut(s) | 42, 296, 600, 606, 804, 1145, 1422, 1443 |
| MboI | GATC | 8 cut(s) | 40, 294, 598, 604, 802, 1143, 1420, 1441 |
| MboII | GAAGA | 7 cut(s) | 203, 235, 676, 680, 812, 895, 1295 |
| MfeI | CAATTG | 1 cut(s) | 675 |
| MflI | RGATCY | 4 cut(s) | 40, 598, 802, 1420 |
| MhlI | GDGCHC | 2 cut(s) | 291, 930 |
| MluCI | AATT | 9 cut(s) | 78, 540, 618, 675, 790, 1103, 1192, 1253, 1403 |
| MlyI | GAGTC | 1 cut(s) | 119 |
| MroXI | GAANNNNTTC | 2 cut(s) | 393, 438 |
| MseI | TTAA | 5 cut(s) | 152, 506, 732, 1251, 1293 |
| MspA1I | CMGCKG | 3 cut(s) | 182, 748, 1001 |
| MspI | CCGG | 4 cut(s) | 129, 325, 548, 844 |
| MspR9I | CCNGG | 4 cut(s) | 70, 130, 325, 548 |
| MunI | CAATTG | 1 cut(s) | 675 |
| MvaI | CCWGG | 1 cut(s) | 70 |
| MvnI | CGCG | 2 cut(s) | 38, 625 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 14, 35, 119, 147, 176 |
| NciI | CCSGG | 3 cut(s) | 130, 325, 548 |
| NcoI | CCATGG | 1 cut(s) | 1224 |
| NdeII | GATC | 8 cut(s) | 40, 294, 598, 604, 802, 1143, 1420, 1441 |
| NlaIII | CATG | 6 cut(s) | 311, 410, 598, 790, 1150, 1228 |
| NlaIV | GGNNCC | 2 cut(s) | 42, 705 |
| NmeAIII | GCCGAG | 1 cut(s) | 949 |
| PaeR7I | CTCGAG | 1 cut(s) | 528 |
| PauI | GCGCGC | 1 cut(s) | 623 |
| PceI | AGGCCT | 2 cut(s) | 234, 742 |
| PdmI | GAANNNNTTC | 2 cut(s) | 393, 438 |
| PfeI | GAWTC | 2 cut(s) | 389, 756 |
| PfoI | TCCNGGA | 1 cut(s) | 128 |
| PinAI | ACCGGT | 1 cut(s) | 843 |
| PkrI | GCNGC | 5 cut(s) | 181, 253, 953, 1335, 1338 |
| PleI | GAGTC | 1 cut(s) | 119 |
| PpsI | GAGTC | 1 cut(s) | 119 |
| PsiI | TTATAA | 1 cut(s) | 965 |
| Psp124BI | GAGCTC | 1 cut(s) | 930 |
| Psp6I | CCWGG | 1 cut(s) | 68 |
| PspFI | CCCAGC | 1 cut(s) | 551 |
| PspGI | CCWGG | 1 cut(s) | 68 |
| PspN4I | GGNNCC | 2 cut(s) | 42, 705 |
| PspPI | GGNCC | 2 cut(s) | 545, 913 |
| PstNI | CAGNNNCTG | 1 cut(s) | 251 |
| PsuI | RGATCY | 4 cut(s) | 40, 598, 802, 1420 |
| PteI | GCGCGC | 1 cut(s) | 623 |
| PvuII | CAGCTG | 3 cut(s) | 182, 748, 1001 |
| RsaI | GTAC | 1 cut(s) | 1007 |
| RsaNI | GTAC | 1 cut(s) | 1006 |
| SacI | GAGCTC | 1 cut(s) | 930 |
| SaqAI | TTAA | 5 cut(s) | 152, 506, 732, 1251, 1293 |
| SatI | GCNGC | 5 cut(s) | 180, 252, 952, 1334, 1337 |
| Sau3AI | GATC | 8 cut(s) | 40, 294, 598, 604, 802, 1143, 1420, 1441 |
| Sau96I | GGNCC | 2 cut(s) | 545, 913 |
| ScaI | AGTACT | 1 cut(s) | 1007 |
| SchI | GAGTC | 1 cut(s) | 119 |
| ScrFI | CCNGG | 4 cut(s) | 70, 130, 325, 548 |
| SduI | GDGCHC | 2 cut(s) | 291, 930 |
| SfcI | CTRYAG | 1 cut(s) | 1273 |
| Sfr274I | CTCGAG | 1 cut(s) | 528 |
| SlaI | CTCGAG | 1 cut(s) | 528 |
| SmlI | CTYRAG | 2 cut(s) | 356, 528 |
| SmoI | CTYRAG | 2 cut(s) | 356, 528 |
| Sse9I | AATT | 9 cut(s) | 78, 540, 618, 675, 790, 1103, 1192, 1253, 1403 |
| SseBI | AGGCCT | 2 cut(s) | 234, 742 |
| SsiI | CCGC | 1 cut(s) | 38 |
| SspI | AATATT | 1 cut(s) | 1265 |
| SspMI | CTAG | 4 cut(s) | 75, 198, 300, 332 |
| SstI | GAGCTC | 1 cut(s) | 930 |
| StuI | AGGCCT | 2 cut(s) | 234, 742 |
| StyD4I | CCNGG | 4 cut(s) | 68, 128, 323, 546 |
| StyI | CCWWGG | 2 cut(s) | 1224, 1298 |
| TaaI | ACNGT | 3 cut(s) | 247, 974, 1127 |
| TaqI | TCGA | 4 cut(s) | 109, 387, 529, 693 |
| TasI | AATT | 9 cut(s) | 78, 540, 618, 675, 790, 1103, 1192, 1253, 1403 |
| TatI | WGTACW | 1 cut(s) | 1005 |
| TfiI | GAWTC | 2 cut(s) | 389, 756 |
| Tru1I | TTAA | 5 cut(s) | 152, 506, 732, 1251, 1293 |
| Tru9I | TTAA | 5 cut(s) | 152, 506, 732, 1251, 1293 |
| TscAI | CASTG | 2 cut(s) | 979, 1441 |
| TseI | GCWGC | 5 cut(s) | 179, 251, 951, 1333, 1336 |
| TspDTI | ATGAA | 5 cut(s) | 296, 305, 803, 921, 1328 |
| TspGWI | ACGGA | 1 cut(s) | 624 |
| TspRI | CASTG | 2 cut(s) | 979, 1441 |
| XapI | RAATTY | 4 cut(s) | 790, 1103, 1192, 1253 |
| XhoI | CTCGAG | 1 cut(s) | 528 |
| XmnI | GAANNNNTTC | 2 cut(s) | 393, 438 |
| XspI | CTAG | 4 cut(s) | 75, 198, 300, 332 |
| ZrmI | AGTACT | 1 cut(s) | 1007 |