Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012380

Physical Location & Seq

Genomic Coordinates Forward (+)

70285740 .. 70287134

Gene Structure 1395 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0579700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGTCAGATTCCGGTGATCAAAGTTTTGTTCATGTCGCTCTCCTTCCGAGCGCCGGCATGGGTCACCTCACGCCCTTCCTTCGACTCGCTGCTTTACTCACAGCACACAATGTTCGGGTCACCTTCATCACTCCAATTCCAACCGTCTCACTTGCAGAGTCGCAGAGTTTATCTCAATTGTCCACCACCTTCCCTCAGATCACTCAAAAGCATCTTCATCTCCTTCCACTTGATGAGCCGTTGGCCAATTCAGAAGACCCCTTTTACTACCATTTTGAGTTGATTCGCCGCTCCTCTCACCTACTCCCTCCTCTTCTATCTTCACTCTCTCCACCTCTCTCAGCTATGATCACAGATATGAGCTTCTCCTCCACTGTTATTCCCATAACCGATTCTCTTGGACTTCCTAACTACATTTTCTTCACATCATCTGCCAAAATGTTGACACTTTATGTGTCCTTCCACACCATGCTCGGCCCACACCAAGAAATCAAAGATGGTCTCGAAGTTTCAGGTTTAGAGCCAATACCAAAAGCATGGATTCCTCCACCACTTCTCAAGCACAGTAATAATCTCCTGAAGAGCTTTTTCACAGAGAATGGTAAGAAAATGACAGAGTCAACTGGTATTCTGATCAACACATTCGAGAGTATAGAGCATGAGACAGTGGCTGCACTAAATGAGGGCAGGGTATTAAAAGGGCTACCATCGGCAATTGCCATTGGACCACTTCCACCATGTAACTCTGAGACAGACCATCAACTAGCATGGCTAGATGATCAACCAACTGGCTCAGTGTTCTATGTCAGCTTTGGGAGTAGGACTGCAATGTCAAGGGAGCAAATCAGAGAGTTGGGTGAGGGCTTGGTGAGGAGTGGGTGCAGGTTTCTGTGGGTCGTGAAGGATAAAAAAGTTGACACGGAAGACGATGAGAAACTGACTGAGGTGCTTGGACAGGGTTTACTGGAAAGAGTGAAGGAAAAGGGATTGGCAGTGAAGAAGTGGCTGAACCAAGAGGAGGTATTGAGGCATCCTGCAATCGCTGGCTTTTTAAGTCATTGTGGCTGGAATTCCTTGAGTGAGGCTCTGTGGAACGGTGTGCCTGTATTAGCATGGCCGCAACATGGGGACCAGAAAATCAATGCCGACTTGGTGGAGAGAATTGGGCTGGGAGTGTGGGTTAAGAGTTGGGGTTGGGGTTGGGGTGAGGAGGAGATGGTGGTGAAAGCAGAGGATATTGCAGCGAGGGTTAAGGAGATGATGGGAAATGACTCATTGAGATTGCAAGCACTACACATTAAAGAAGAGGCTAGACTGGCAGTAGGAAATACTGGTAGTTCTACAAAGAGACTCACTGCTCTCATTGAGACATGGAAAGAGTTTCAAGTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032502 GO:0033993 GO:0034622 GO:0034641 GO:0042221 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

464

Amino Acids

51.39

Weight (kDa)

5.75

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	255 - 395	7.6e-19	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14605 AT4G14605
fragaria_vesca	FvH4_6g53060 FvH4_6g53060
malus_domestica	MD17G1015100.v1.1
prunus_persica	Prupe.3G302700_v2.0.a1 Prupe.3G302700_v2.0.a1 Prupe.3G302700_v2.0.a1 Prupe.3G302700_v2.0.a1
pyrus_communis	pycom17g01220
rosa_chinensis	RchiOBHm_Chr2g0174841
rosa_laevigata	RLG00000022300
rosa_roxburghii	Rroxscaffold_2G00077650
rosa_rugosa	Rorug02G0579700
rosa_samantha	Rh2AG661000 Rh2BG672400 Rh2CG635200 Rh2DG685500
rosa_wichuraiana	Rw2G054170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	829
Acc36I	ACCTGC	1 cut(s)	873
AccBSI	CCGCTC	1 cut(s)	291
AciI	CCGC	2 cut(s)	289, 1118
AcoI	YGGCCR	2 cut(s)	243, 1115
AcsI	RAATTY	1 cut(s)	1069
AcuI	CTGAAG	1 cut(s)	599
AfiI	CCNNNNNNNGG	3 cut(s)	53, 1018, 1124
AgsI	TTSAA	1 cut(s)	1385
AluBI	AGCT	4 cut(s)	344, 363, 585, 810
AluI	AGCT	4 cut(s)	344, 363, 585, 810
Alw26I	GTCTC	6 cut(s)	151, 506, 656, 743, 1342, 1361
AlwNI	CAGNNNCTG	1 cut(s)	671
AoxI	GGCC	3 cut(s)	243, 475, 1115
ApeKI	GCWGC	3 cut(s)	89, 671, 1241
ApoI	RAATTY	1 cut(s)	1069
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	3 cut(s)	476, 725, 1129
AsuHPI	GGTGA	8 cut(s)	26, 56, 112, 290, 869, 880, 1217, 1234
AvaII	GGWCC	2 cut(s)	725, 1129
BalI	TGGCCA	1 cut(s)	245
BbsI	GAAGAC	2 cut(s)	261, 930
BbvI	GCAGC	3 cut(s)	76, 658, 1253
BccI	CCATC	5 cut(s)	491, 715, 765, 1210, 1255
BceAI	ACGGC	1 cut(s)	223
BclI	TGATCA	4 cut(s)	16, 348, 633, 778
BcoDI	GTCTC	6 cut(s)	151, 506, 656, 743, 1342, 1361
BfaI	CTAG	3 cut(s)	764, 773, 1311
BfoI	RGCGCY	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	873
BisI	GCNGC	5 cut(s)	90, 289, 672, 1118, 1242
BlsI	GCNGC	5 cut(s)	91, 290, 673, 1119, 1243
Bme18I	GGWCC	2 cut(s)	725, 1129
BmgT120I	GGNCC	3 cut(s)	476, 725, 1129
BmiI	GGNNCC	1 cut(s)	1130
BmsI	GCATC	2 cut(s)	220, 1039
BpiI	GAAGAC	2 cut(s)	261, 930
BplI	GAGNNNNNCTC	4 cut(s)	157, 189, 1069, 1101
BpuEI	CTTGAG	2 cut(s)	542, 1096
BsaI	GGTCTC	1 cut(s)	506
BsaWI	WCCGGW	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	1164, 1194
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 1018, 1124
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	5 cut(s)	628, 793, 969, 1320, 1336
Bse3DI	GCAATG	1 cut(s)	834
BseGI	GGATG	1 cut(s)	1030
BseLI	CCNNNNNNNGG	3 cut(s)	53, 1018, 1124
BseMI	GCAATG	1 cut(s)	834
BseMII	CTCAG	5 cut(s)	209, 354, 738, 807, 933
BseNI	ACTGG	5 cut(s)	628, 793, 969, 1320, 1336
BseRI	GAGGAG	7 cut(s)	283, 300, 358, 886, 1031, 1223, 1226
BseXI	GCAGC	3 cut(s)	76, 658, 1253
BseYI	CCCAGC	1 cut(s)	1168
BsgI	GTGCAG	2 cut(s)	657, 901
BshFI	GGCC	3 cut(s)	245, 477, 1117
BsiSI	CCGG	2 cut(s)	12, 54
BslFI	GGGAC	1 cut(s)	1142
BslI	CCNNNNNNNGG	3 cut(s)	53, 1018, 1124
BsmAI	GTCTC	6 cut(s)	151, 506, 656, 743, 1342, 1361
BsmBI	CGTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	1142
BsnI	GGCC	3 cut(s)	245, 477, 1117
Bso31I	GGTCTC	1 cut(s)	506
Bsp143I	GATC	5 cut(s)	16, 198, 348, 633, 778
BspACI	CCGC	2 cut(s)	289, 1118
BspANI	GGCC	3 cut(s)	245, 477, 1117
BspCNI	CTCAG	5 cut(s)	208, 353, 739, 806, 934
BspLI	GGNNCC	1 cut(s)	1130
BspMI	ACCTGC	1 cut(s)	873
BspQI	GCTCTTC	1 cut(s)	575
BspTNI	GGTCTC	1 cut(s)	506
BsrBI	CCGCTC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	834
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	5 cut(s)	628, 793, 969, 1320, 1336
BssAI	RCCGGY	1 cut(s)	53
BssMI	GATC	5 cut(s)	16, 198, 348, 633, 778
Bst4CI	ACNGT	5 cut(s)	145, 376, 566, 667, 1097
Bst6I	CTCTTC	3 cut(s)	318, 575, 1299
BstC8I	GCNNGC	3 cut(s)	55, 1045, 1287
BstDEI	CTNAG	5 cut(s)	195, 340, 747, 793, 942
BstEII	GGTNACC	2 cut(s)	62, 118
BstF5I	GGATG	1 cut(s)	1030
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	5 cut(s)	19, 201, 351, 636, 781
BstMAI	GTCTC	6 cut(s)	151, 506, 656, 743, 1342, 1361
BstMBI	GATC	5 cut(s)	16, 198, 348, 633, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	1316
BstPI	GGTNACC	2 cut(s)	62, 118
BstV1I	GCAGC	3 cut(s)	76, 658, 1253
BstV2I	GAAGAC	2 cut(s)	261, 930
BstXI	CCANNNNNNTGG	1 cut(s)	537
BsuRI	GGCC	3 cut(s)	245, 477, 1117
BtsCI	GGATG	1 cut(s)	1030
BtsI	GCAGTG	2 cut(s)	999, 1353
BtsIMutI	CAGTG	5 cut(s)	372, 672, 801, 999, 1353
BveI	ACCTGC	1 cut(s)	873
Cac8I	GCNNGC	3 cut(s)	55, 1045, 1287
CaiI	CAGNNNCTG	1 cut(s)	671
CfoI	GCGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	476, 725, 1129
DdeI	CTNAG	5 cut(s)	195, 340, 747, 793, 942
DpnI	GATC	5 cut(s)	18, 200, 350, 635, 780
DpnII	GATC	5 cut(s)	16, 198, 348, 633, 778
DrdI	GACNNNNNNGTC	1 cut(s)	829
DseDI	GACNNNNNNGTC	1 cut(s)	829
EaeI	YGGCCR	2 cut(s)	243, 1115
Eam1104I	CTCTTC	3 cut(s)	318, 575, 1299
EarI	CTCTTC	3 cut(s)	318, 575, 1299
Eco31I	GGTCTC	1 cut(s)	506
Eco47I	GGWCC	2 cut(s)	725, 1129
Eco57I	CTGAAG	1 cut(s)	599
Eco91I	GGTNACC	2 cut(s)	62, 118
EcoO65I	GGTNACC	2 cut(s)	62, 118
EcoRI	GAATTC	1 cut(s)	1069
Esp3I	CGTCTC	1 cut(s)	151
FaqI	GGGAC	1 cut(s)	1142
FbaI	TGATCA	4 cut(s)	16, 348, 633, 778
Fnu4HI	GCNGC	5 cut(s)	90, 289, 672, 1118, 1242
FokI	GGATG	1 cut(s)	1017
Fsp4HI	GCNGC	5 cut(s)	90, 289, 672, 1118, 1242
FspBI	CTAG	3 cut(s)	764, 773, 1311
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	5 cut(s)	90, 289, 672, 1118, 1242
GsaI	CCCAGC	1 cut(s)	1172
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	3 cut(s)	245, 477, 1117
HapII	CCGG	2 cut(s)	12, 54
HhaI	GCGC	1 cut(s)	53
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	3 cut(s)	444, 621, 916
HindII	GTYRAC	3 cut(s)	444, 621, 916
HinfI	GANTC	9 cut(s)	8, 84, 158, 283, 392, 541, 617, 1271, 1350
HpaII	CCGG	2 cut(s)	12, 54
HphI	GGTGA	8 cut(s)	26, 56, 112, 290, 869, 880, 1217, 1234
Hpy166II	GTNNAC	5 cut(s)	183, 444, 621, 916, 962
Hpy188I	TCNGA	7 cut(s)	7, 48, 198, 253, 633, 748, 848
Hpy188III	TCNNGA	4 cut(s)	503, 577, 646, 898
Hpy8I	GTNNAC	5 cut(s)	183, 444, 621, 916, 962
HpyAV	CCTTC	9 cut(s)	53, 85, 89, 133, 199, 233, 469, 895, 970
HpyCH4III	ACNGT	5 cut(s)	145, 376, 566, 667, 1097
HpyCH4V	TGCA	7 cut(s)	155, 674, 827, 882, 1037, 1241, 1285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1316
HpyF3I	CTNAG	5 cut(s)	195, 340, 747, 793, 942
HspAI	GCGC	1 cut(s)	51
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Ksp22I	TGATCA	4 cut(s)	16, 348, 633, 778
Kzo9I	GATC	5 cut(s)	16, 198, 348, 633, 778
LguI	GCTCTTC	1 cut(s)	575
LmnI	GCTCC	2 cut(s)	296, 838
Lsp1109I	GCAGC	3 cut(s)	76, 658, 1253
LweI	GCATC	2 cut(s)	220, 1039
MaeI	CTAG	3 cut(s)	764, 773, 1311
MaeIII	GTNAC	3 cut(s)	62, 118, 740
MalI	GATC	5 cut(s)	18, 200, 350, 635, 780
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	5 cut(s)	16, 198, 348, 633, 778
MboII	GAAGA	9 cut(s)	206, 266, 305, 312, 412, 592, 935, 1009, 1316
MfeI	CAATTG	2 cut(s)	176, 714
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	6 cut(s)	135, 176, 247, 714, 1069, 1161
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	5 cut(s)	78, 167, 626, 1265, 1344
MmeI	TCCRAC	1 cut(s)	164
Mox20I	TGGCCA	1 cut(s)	245
MroNI	GCCGGC	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	6 cut(s)	695, 1052, 1182, 1251, 1299, 1393
MslI	CAYNNNNRTG	1 cut(s)	356
Msp20I	TGGCCA	1 cut(s)	245
MspI	CCGG	2 cut(s)	12, 54
MunI	CAATTG	2 cut(s)	176, 714
MwoI	GCNNNNNNNGC	1 cut(s)	1316
NaeI	GCCGGC	1 cut(s)	55
NdeII	GATC	5 cut(s)	16, 198, 348, 633, 778
NgoMIV	GCCGGC	1 cut(s)	53
NlaIV	GGNNCC	1 cut(s)	1130
NmeAIII	GCCGAG	1 cut(s)	453
NmuCI	GTSAC	2 cut(s)	62, 118
PciSI	GCTCTTC	1 cut(s)	575
PdiI	GCCGGC	1 cut(s)	55
PfeI	GAWTC	4 cut(s)	8, 283, 392, 541
PflFI	GACNNNGTC	1 cut(s)	616
PkrI	GCNGC	5 cut(s)	91, 290, 673, 1119, 1243
PleI	GAGTC	5 cut(s)	78, 166, 625, 1265, 1344
PpsI	GAGTC	5 cut(s)	78, 166, 625, 1265, 1344
PspEI	GGTNACC	2 cut(s)	62, 118
PspFI	CCCAGC	1 cut(s)	1168
PspN4I	GGNNCC	1 cut(s)	1130
PspPI	GGNCC	3 cut(s)	476, 725, 1129
PstNI	CAGNNNCTG	1 cut(s)	671
PsyI	GACNNNGTC	1 cut(s)	616
RseI	CAYNNNNRTG	1 cut(s)	356
SapI	GCTCTTC	1 cut(s)	575
SaqAI	TTAA	6 cut(s)	695, 1052, 1182, 1251, 1299, 1393
SatI	GCNGC	5 cut(s)	90, 289, 672, 1118, 1242
Sau3AI	GATC	5 cut(s)	16, 198, 348, 633, 778
Sau96I	GGNCC	3 cut(s)	476, 725, 1129
SchI	GAGTC	5 cut(s)	78, 167, 626, 1265, 1344
SfaNI	GCATC	2 cut(s)	220, 1039
SinI	GGWCC	2 cut(s)	725, 1129
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	2 cut(s)	557, 1075
SmoI	CTYRAG	2 cut(s)	557, 1075
Sse9I	AATT	6 cut(s)	135, 176, 247, 714, 1069, 1161
SsiI	CCGC	2 cut(s)	289, 1118
SspMI	CTAG	3 cut(s)	764, 773, 1311
TaaI	ACNGT	5 cut(s)	145, 376, 566, 667, 1097
TaqI	TCGA	3 cut(s)	82, 504, 645
TasI	AATT	6 cut(s)	135, 176, 247, 714, 1069, 1161
TauI	GCSGC	2 cut(s)	291, 1120
TfiI	GAWTC	4 cut(s)	8, 283, 392, 541
Tru1I	TTAA	6 cut(s)	695, 1052, 1182, 1251, 1299, 1393
Tru9I	TTAA	6 cut(s)	695, 1052, 1182, 1251, 1299, 1393
TscAI	CASTG	5 cut(s)	379, 672, 801, 999, 1360
TseFI	GTSAC	2 cut(s)	62, 118
TseI	GCWGC	3 cut(s)	89, 671, 1241
Tsp45I	GTSAC	2 cut(s)	62, 118
TspDTI	ATGAA	3 cut(s)	20, 115, 206
TspGWI	ACGGA	1 cut(s)	935
TspRI	CASTG	5 cut(s)	379, 672, 801, 999, 1360
Tth111I	GACNNNGTC	1 cut(s)	616
VpaK11BI	GGWCC	2 cut(s)	725, 1129
XapI	RAATTY	1 cut(s)	1069
XspI	CTAG	3 cut(s)	764, 773, 1311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.