FvH4_6g53060
ERF Family

mTERF

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
38967574 .. 38970672
3099 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53060.t1

Sequence Viewer

Length: 1500 bp
ATGGAAGCTTTATGTGACTTTCCTTCTCCTCTGCAAGTTTTGTTCAGAACTGGAAGGTGTTGCAATGTGAATGATTCAAGCTTCAAGCTGACGTGTCAATACCCACTGAGGCTTGTGAGGACGAAACTTGCTTTCTCTCAAAAGCTCTTCATCTGTCGAGCAAGGTTTGCGGACTCTGGGATAGAAGGGACATTTAACTTAAAACTGGTATCTCCAGCTCTTTTAGCAGCTGAGAAAGAAGAAGCTAAAGCTGTCCTGATGTTGTTCTTGAAGAAACAAGGTCTCAGCCATACACCTGCCGCAAGAACCATAAACAAGTCGGAGCTTTTCATTGATCACCTTGTCGATAGGCTTCATTCTGTTCATAAATCCCGGTATCTAGTAGGACGTGAGCTAACCACTCTTGAGATAAGGGAGGCTCTAATCCCTTACCTTGAATCCCTTCTAGAGGAGCATGGTATTTATATGGTAGATGTGGTGGAAAGCTTTCCTGATGCACCAGTTAAAGCAAAGCCAGTTGCACCGGTTATTAAATCCCAGTCATCTGTTGACTTGAAGAAGTTGAAAGCCATATCTAGAGTGAGTGAGATAGGCCCAGCTGGGAAGCTTCCATCTCATATCCAATACCTTTTAGAGCTTGGAATGGATCTCGATCAAATAAAGGGTATTGCGCGCAGATTTCCATCTTTTGCCTACTACAGTTTGGAGGGGAAGATAAAACCAACTGTTGAGTTTCTCCTTGATCTTGGGGTCCCAAAATCTGATATTCCTACAATCCTCTTTAAGAGGCCTCAGCTGTGCGGGATCAGTCTTTATGAGAATATTATGCCAACCATGAGATTCTTAGAAAACCTAGGTGTGGACAAGAAACAGTGGGCAAAAGTGATATACCGCTTTCCAGCCCTTCTCACATATAGCAGGCAGAAGGTGAAAACAACAGTAGATTTCCTCTATGAAATGGGCCTTTCAGAAGAGATCATAGGTAAGGTCTTAACAAGGTGCCCGAACATAATTAGTTACAGTGTCGAGGACAAGTTACGGCCCACAGCTGAGTACTTTCGCTCACTAGGGGTGGATGTTGGTGTTCTTCTGCATCGATCTCCCACAGTGTTTGGCCTTAGTATAGAGGCCAACTTGAAGCCTGTGACAGATTTTTTCATTGAGAGGGGATATACTATGGAAGAAATTGGGACAATGCTTTCAAGGTATGGAGCCTTATATACGTTCAGCTTGACAGAGAACTTGATGCCGAAATGGGAGTTCTTTTTGACCATGGATTATCCAAAATCAGAGCTGGTTAAATTCCCTCAATACTTTGGTTATAGTTTGGTAGAACGGATTAAACCAAGATATGCACTTATGAAGGAATGTGGAGTGATGTTACTATTGAACCAGTTGTTATCGCTATCTGCTTCTAACTTTGATAAGGCTCTTAAAAAGAAAATTGAGAAAATGGCGGCTGCCAATGGTGAAGATCCCAACACAGATGTTGTACTATGA

Protein Analysis

500

Amino Acids

56.58

Weight (kDa)

8.97

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 71 - 319 4.5e-24 mTERF
mTERF PF02536 307 - 474 1.7e-30 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012380)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 304
Acc36I ACCTGC 1 cut(s) 304
AccB1I GGYRCC 1 cut(s) 999
AccII CGCG 1 cut(s) 673
AciI CCGC 5 cut(s) 170, 300, 801, 892, 1457
AclWI GGATC 3 cut(s) 654, 812, 1469
AcsI RAATTY 1 cut(s) 1301
AfaI GTAC 2 cut(s) 1055, 1494
AfiI CCNNNNNNNGG 2 cut(s) 448, 859
AflIII ACRYGT 1 cut(s) 92
AgeI ACCGGT 1 cut(s) 523
AgsI TTSAA 9 cut(s) 78, 85, 271, 437, 556, 565, 1138, 1203, 1390
AjiI CACGTC 2 cut(s) 93, 389
Alw26I GTCTC 1 cut(s) 287
AlwI GGATC 3 cut(s) 654, 812, 1469
AoxI GGCC 6 cut(s) 592, 788, 961, 1040, 1114, 1128
ApeKI GCWGC 2 cut(s) 227, 1460
ApoI RAATTY 1 cut(s) 1301
AsiGI ACCGGT 1 cut(s) 523
Asp700I GAANNNNTTC 2 cut(s) 441, 486
AspA2I CCTAGG 1 cut(s) 853
AspLEI GCGC 2 cut(s) 673, 675
AspS9I GGNCC 4 cut(s) 593, 751, 961, 1041
AsuC2I CCSGG 1 cut(s) 373
AsuHPI GGTGA 3 cut(s) 329, 940, 1481
AvaII GGWCC 1 cut(s) 751
AvrII CCTAGG 1 cut(s) 853
BaeGI GKGCMC 1 cut(s) 1004
BanI GGYRCC 1 cut(s) 999
BbvCI CCTCAGC 1 cut(s) 792
BbvI GCAGC 2 cut(s) 239, 1447
BccI CCATC 2 cut(s) 619, 691
BceAI ACGGC 1 cut(s) 1055
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 5 cut(s) 380, 446, 576, 854, 1067
BfmI CTRYAG 1 cut(s) 697
BfuAI ACCTGC 1 cut(s) 304
BisI GCNGC 4 cut(s) 228, 300, 1458, 1461
BlnI CCTAGG 1 cut(s) 853
BlsI GCNGC 4 cut(s) 229, 301, 1459, 1462
BmcAI AGTACT 1 cut(s) 1055
Bme1390I CCNGG 1 cut(s) 373
Bme18I GGWCC 1 cut(s) 751
BmgBI CACGTC 2 cut(s) 93, 389
BmgT120I GGNCC 4 cut(s) 593, 751, 961, 1041
BmiI GGNNCC 4 cut(s) 752, 753, 1001, 1213
BmrFI CCNGG 1 cut(s) 373
BmrI ACTGGG 1 cut(s) 532
BmsI GCATC 3 cut(s) 484, 1102, 1236
BmuI ACTGGG 1 cut(s) 532
BpmI CTGGAG 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 792
BpuEI CTTGAG 1 cut(s) 425
BpuMI CCSGG 1 cut(s) 373
Bsa29I ATCGAT 1 cut(s) 1096
BsaBI GATNNNNATC 2 cut(s) 651, 682
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 853, 1272
BsaWI WCCGGW 1 cut(s) 523
Bsc4I CCNNNNNNNGG 2 cut(s) 448, 859
Bse118I RCCGGY 1 cut(s) 523
Bse1I ACTGG 6 cut(s) 55, 210, 500, 515, 538, 1393
Bse3DI GCAATG 1 cut(s) 70
Bse8I GATNNNNATC 2 cut(s) 651, 682
BseCI ATCGAT 1 cut(s) 1096
BseDI CCNNGG 2 cut(s) 853, 1272
BseGI GGATG 1 cut(s) 1081
BseJI GATNNNNATC 2 cut(s) 651, 682
BseLI CCNNNNNNNGG 2 cut(s) 448, 859
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 5 cut(s) 98, 222, 298, 806, 1041
BseNI ACTGG 6 cut(s) 55, 210, 500, 515, 538, 1393
BsePI GCGCGC 1 cut(s) 671
BseRI GAGGAG 2 cut(s) 18, 464
BseSI GKGCMC 1 cut(s) 1004
BseXI GCAGC 2 cut(s) 239, 1447
BseYI CCCAGC 2 cut(s) 595, 599
Bsh1236I CGCG 1 cut(s) 673
BshFI GGCC 6 cut(s) 594, 790, 963, 1042, 1116, 1130
BshNI GGYRCC 1 cut(s) 999
BshTI ACCGGT 1 cut(s) 523
BshVI ATCGAT 1 cut(s) 1096
BsiSI CCGG 2 cut(s) 373, 524
BslFI GGGAC 3 cut(s) 202, 737, 1204
BslI CCNNNNNNNGG 2 cut(s) 448, 859
BsmAI GTCTC 1 cut(s) 287
BsmFI GGGAC 3 cut(s) 202, 737, 1204
BsnI GGCC 6 cut(s) 594, 790, 963, 1042, 1116, 1130
Bso31I GGTCTC 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 1004
Bsp143I GATC 8 cut(s) 334, 646, 652, 742, 804, 975, 1097, 1474
Bsp19I CCATGG 1 cut(s) 1272
BspACI CCGC 5 cut(s) 170, 300, 801, 892, 1457
BspANI GGCC 6 cut(s) 594, 790, 963, 1042, 1116, 1130
BspCNI CTCAG 5 cut(s) 99, 223, 297, 805, 1042
BspDI ATCGAT 1 cut(s) 1096
BspFNI CGCG 1 cut(s) 673
BspLI GGNNCC 4 cut(s) 752, 753, 1001, 1213
BspMI ACCTGC 1 cut(s) 304
BspPI GGATC 3 cut(s) 654, 812, 1469
BspQI GCTCTTC 1 cut(s) 152
BspT107I GGYRCC 1 cut(s) 999
BspTNI GGTCTC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 70
BsrFI RCCGGY 1 cut(s) 523
BsrI ACTGG 6 cut(s) 55, 210, 500, 515, 538, 1393
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 2 cut(s) 853, 1272
BssHII GCGCGC 1 cut(s) 671
BssMI GATC 8 cut(s) 334, 646, 652, 742, 804, 975, 1097, 1474
BssT1I CCWWGG 2 cut(s) 853, 1272
Bst4CI ACNGT 6 cut(s) 701, 727, 873, 940, 1022, 1108
Bst6I CTCTTC 2 cut(s) 152, 966
BstAPI GCANNNNNTGC 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 673, 920
BstDEI CTNAG 7 cut(s) 107, 231, 284, 792, 844, 1050, 1118
BstDSI CCRYGG 1 cut(s) 1272
BstENI CCTNNNNNAGG 1 cut(s) 446
BstF5I GGATG 1 cut(s) 1081
BstFNI CGCG 1 cut(s) 673
BstHHI GCGC 2 cut(s) 673, 675
BstKTI GATC 8 cut(s) 337, 649, 655, 745, 807, 978, 1100, 1477
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 8 cut(s) 334, 646, 652, 742, 804, 975, 1097, 1474
BstMWI GCNNNNNNNGC 2 cut(s) 167, 224
BstSCI CCNGG 1 cut(s) 371
BstSFI CTRYAG 1 cut(s) 697
BstSLI GKGCMC 1 cut(s) 1004
BstUI CGCG 1 cut(s) 673
BstV1I GCAGC 2 cut(s) 239, 1447
BstX2I RGATCY 2 cut(s) 646, 1474
BstYI RGATCY 2 cut(s) 646, 1474
Bsu15I ATCGAT 1 cut(s) 1096
BsuRI GGCC 6 cut(s) 594, 790, 963, 1042, 1116, 1130
BsuTUI ATCGAT 1 cut(s) 1096
BtgI CCRYGG 1 cut(s) 1272
BtrI CACGTC 2 cut(s) 93, 389
BtsCI GGATG 1 cut(s) 1081
BtsIMutI CAGTG 4 cut(s) 104, 878, 1027, 1113
BveI ACCTGC 1 cut(s) 304
Cac8I GCNNGC 2 cut(s) 673, 920
CfoI GCGC 2 cut(s) 673, 675
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 4 cut(s) 593, 751, 961, 1041
ClaI ATCGAT 1 cut(s) 1096
Csp6I GTAC 2 cut(s) 1054, 1493
CspAI ACCGGT 1 cut(s) 523
CspCI CAANNNNNGTGG 2 cut(s) 1093, 1128
CviAII CATG 3 cut(s) 455, 835, 1273
CviQI GTAC 2 cut(s) 1054, 1493
DdeI CTNAG 7 cut(s) 107, 231, 284, 792, 844, 1050, 1118
DpnI GATC 8 cut(s) 336, 648, 654, 744, 806, 977, 1099, 1476
DpnII GATC 8 cut(s) 334, 646, 652, 742, 804, 975, 1097, 1474
Eam1104I CTCTTC 2 cut(s) 152, 966
EarI CTCTTC 2 cut(s) 152, 966
Eco130I CCWWGG 2 cut(s) 853, 1272
Eco147I AGGCCT 1 cut(s) 790
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 751
EcoNI CCTNNNNNAGG 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 751
EcoT14I CCWWGG 2 cut(s) 853, 1272
ErhI CCWWGG 2 cut(s) 853, 1272
FaeI CATG 3 cut(s) 458, 838, 1276
FaqI GGGAC 3 cut(s) 202, 737, 1204
FatI CATG 3 cut(s) 454, 834, 1272
FauI CCCGC 1 cut(s) 794
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 4 cut(s) 228, 300, 1458, 1461
FokI GGATG 1 cut(s) 1088
Fsp4HI GCNGC 4 cut(s) 228, 300, 1458, 1461
FspBI CTAG 5 cut(s) 380, 446, 576, 854, 1067
GlaI GCGC 2 cut(s) 672, 674
GluI GCNGC 4 cut(s) 228, 300, 1458, 1461
GsaI CCCAGC 2 cut(s) 599, 603
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 6 cut(s) 594, 790, 963, 1042, 1116, 1130
HapII CCGG 2 cut(s) 373, 524
HhaI GCGC 2 cut(s) 673, 675
Hin1II CATG 3 cut(s) 458, 838, 1276
Hin6I GCGC 2 cut(s) 671, 673
HinP1I GCGC 2 cut(s) 671, 673
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HindIII AAGCTT 4 cut(s) 6, 79, 484, 605
HinfI GANTC 4 cut(s) 74, 173, 437, 840
HpaII CCGG 2 cut(s) 373, 524
HphI GGTGA 3 cut(s) 329, 940, 1481
Hpy166II GTNNAC 2 cut(s) 550, 862
Hpy188I TCNGA 5 cut(s) 47, 322, 763, 970, 1291
Hpy188III TCNNGA 7 cut(s) 256, 268, 404, 446, 491, 576, 650
Hpy8I GTNNAC 2 cut(s) 550, 862
HpyAV CCTTC 7 cut(s) 33, 48, 179, 452, 914, 919, 1357
HpyCH4III ACNGT 6 cut(s) 701, 727, 873, 940, 1022, 1108
HpyCH4IV ACGT 3 cut(s) 92, 388, 1223
HpyCH4V TGCA 6 cut(s) 34, 63, 497, 521, 1093, 1355
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 224
HpyF3I CTNAG 7 cut(s) 107, 231, 284, 792, 844, 1050, 1118
HpySE526I ACGT 3 cut(s) 92, 388, 1223
Hsp92II CATG 3 cut(s) 458, 838, 1276
HspAI GCGC 2 cut(s) 671, 673
KflI GGGWCCC 1 cut(s) 751
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 8 cut(s) 334, 646, 652, 742, 804, 975, 1097, 1474
LguI GCTCTTC 1 cut(s) 152
LmnI GCTCC 3 cut(s) 322, 451, 1211
Lsp1109I GCAGC 2 cut(s) 239, 1447
LweI GCATC 3 cut(s) 484, 1102, 1236
MaeI CTAG 5 cut(s) 380, 446, 576, 854, 1067
MaeII ACGT 3 cut(s) 92, 388, 1223
MaeIII GTNAC 5 cut(s) 14, 1016, 1035, 1144, 1380
MalI GATC 8 cut(s) 336, 648, 654, 744, 806, 977, 1099, 1476
MboI GATC 8 cut(s) 334, 646, 652, 742, 804, 975, 1097, 1474
MboII GAAGA 9 cut(s) 139, 251, 283, 568, 724, 983, 1079, 1193, 1484
MflI RGATCY 2 cut(s) 646, 1474
MhlI GDGCHC 1 cut(s) 1004
MluCI AATT 4 cut(s) 1011, 1185, 1301, 1443
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 300
MroXI GAANNNNTTC 2 cut(s) 441, 486
MseI TTAA 9 cut(s) 195, 200, 504, 531, 783, 992, 1299, 1341, 1434
MspA1I CMGCKG 4 cut(s) 230, 599, 796, 1049
MspI CCGG 2 cut(s) 373, 524
MspR9I CCNGG 1 cut(s) 373
MvnI CGCG 1 cut(s) 673
MwoI GCNNNNNNNGC 2 cut(s) 167, 224
NciI CCSGG 1 cut(s) 373
NcoI CCATGG 1 cut(s) 1272
NdeII GATC 8 cut(s) 334, 646, 652, 742, 804, 975, 1097, 1474
NlaIII CATG 3 cut(s) 458, 838, 1276
NlaIV GGNNCC 4 cut(s) 752, 753, 1001, 1213
NmuCI GTSAC 2 cut(s) 14, 1144
PaqCI CACCTGC 1 cut(s) 304
PauI GCGCGC 1 cut(s) 671
PceI AGGCCT 1 cut(s) 790
PciSI GCTCTTC 1 cut(s) 152
PdmI GAANNNNTTC 2 cut(s) 441, 486
PfeI GAWTC 3 cut(s) 74, 437, 840
PinAI ACCGGT 1 cut(s) 523
PkrI GCNGC 4 cut(s) 229, 301, 1459, 1462
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PpuMI RGGWCCY 1 cut(s) 751
Psp5II RGGWCCY 1 cut(s) 751
PspFI CCCAGC 2 cut(s) 595, 599
PspN4I GGNNCC 4 cut(s) 752, 753, 1001, 1213
PspPI GGNCC 4 cut(s) 593, 751, 961, 1041
PspPPI RGGWCCY 1 cut(s) 751
PsuI RGATCY 2 cut(s) 646, 1474
PteI GCGCGC 1 cut(s) 671
PvuII CAGCTG 4 cut(s) 230, 599, 796, 1049
RsaI GTAC 2 cut(s) 1055, 1494
RsaNI GTAC 2 cut(s) 1054, 1493
SapI GCTCTTC 1 cut(s) 152
SaqAI TTAA 9 cut(s) 195, 200, 504, 531, 783, 992, 1299, 1341, 1434
SatI GCNGC 4 cut(s) 228, 300, 1458, 1461
Sau3AI GATC 8 cut(s) 334, 646, 652, 742, 804, 975, 1097, 1474
Sau96I GGNCC 4 cut(s) 593, 751, 961, 1041
ScaI AGTACT 1 cut(s) 1055
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 373
SduI GDGCHC 1 cut(s) 1004
SfaNI GCATC 3 cut(s) 484, 1102, 1236
SfcI CTRYAG 1 cut(s) 697
SinI GGWCC 1 cut(s) 751
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 4 cut(s) 1011, 1185, 1301, 1443
SseBI AGGCCT 1 cut(s) 790
SsiI CCGC 5 cut(s) 170, 300, 801, 892, 1457
SspI AATATT 1 cut(s) 823
SspMI CTAG 5 cut(s) 380, 446, 576, 854, 1067
StuI AGGCCT 1 cut(s) 790
StyD4I CCNGG 1 cut(s) 371
StyI CCWWGG 2 cut(s) 853, 1272
TaaI ACNGT 6 cut(s) 701, 727, 873, 940, 1022, 1108
TaiI ACGT 3 cut(s) 95, 391, 1226
TaqI TCGA 5 cut(s) 157, 345, 651, 1026, 1096
TasI AATT 4 cut(s) 1011, 1185, 1301, 1443
TatI WGTACW 2 cut(s) 1053, 1492
TauI GCSGC 2 cut(s) 302, 1460
TfiI GAWTC 3 cut(s) 74, 437, 840
Tru1I TTAA 9 cut(s) 195, 200, 504, 531, 783, 992, 1299, 1341, 1434
Tru9I TTAA 9 cut(s) 195, 200, 504, 531, 783, 992, 1299, 1341, 1434
TscAI CASTG 4 cut(s) 111, 878, 1027, 1113
TseFI GTSAC 2 cut(s) 14, 1144
TseI GCWGC 2 cut(s) 227, 1460
Tsp45I GTSAC 2 cut(s) 14, 1144
TspDTI ATGAA 7 cut(s) 139, 319, 344, 353, 969, 1147, 1376
TspGWI ACGGA 1 cut(s) 1351
TspRI CASTG 4 cut(s) 111, 878, 1027, 1113
VpaK11BI GGWCC 1 cut(s) 751
XagI CCTNNNNNAGG 1 cut(s) 446
XapI RAATTY 1 cut(s) 1301
XbaI TCTAGA 2 cut(s) 445, 575
XmaJI CCTAGG 1 cut(s) 853
XmnI GAANNNNTTC 2 cut(s) 441, 486
XspI CTAG 5 cut(s) 380, 446, 576, 854, 1067
ZrmI AGTACT 1 cut(s) 1055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.