Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007390

Physical Location & Seq

Genomic Coordinates Reverse (-)

8406247 .. 8407896

Gene Structure 1650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14660.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTTTCTCAAAGTCCAATTACCATGGAACGTGATGATTCCAGCTGAAAACATGGATGCCAAAGGGCTGATGTTGAAGAGAGCTATACTAGTAGAGTTACTAGAGGCGTTTGCTTCCAAGAAAGCAACCAAGGAGCTTGGCTACTACGTGGCAGTCACAACTTTGGACAAGATTGGAGAAGGCAAAATCAGGGAGCACACCGGTGAAGTTTTGTTCCCGGTAATGTTCAGCGGAATGACTTTCAAGATCTTCAAAGGAGAGATAATTCACGGTGTGGTGCACAAGGTGTTGAAGCACGGTGTCTTCATGAGGTGTGGTCCAATCGAGAATGTTTACCTCTCCTACACGAAGATGCCGGATTACAAGTATATCCCTGGAGAGAACCCGATCTTCATGAATGAGAAGACGTCTAGGATTCAGGTTGAGACTACAGTGAGGGTTGTTGTGATTGGGATAAAGTGGATGGAAGTAGAGAGGGAGTTTCAGGCGTTGGCTAGCTTGGAAGGTGACTATCTTGGACCATTATCTGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

SHS2_Rpb7-N

Protein Analysis

178

Amino Acids

20.26

Weight (kDa)

6.92

Isoelectric Point (pI)

17.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SHS2_Rpb7-N	PF03876	9 - 68	4.7e-08	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14660 AT4G14660 AT4G14660
fragaria_vesca	FvH4_4g12050 FvH4_4g12050
malus_domestica	MD16G1207700.v1.1
prunus_persica	Prupe.1G030000_v2.0.a1 Prupe.1G030000_v2.0.a1 Prupe.1G030000_v2.0.a1 Prupe.1G030000_v2.0.a1
pyrus_communis	pycom13g17890 pycom16g17510
rosa_chinensis	RchiOBHm_Chr4g0390271 RchiOBHm_Chr4g0390761
rosa_laevigata	RLG00000009929
rosa_multiflora	Rmu_sc0004432.1_g000009 Rmu_sc0014620.1_g000003
rosa_roxburghii	Rroxscaffold_5G00336390
rosa_rugosa	Rorug03G0328900
rosa_samantha	Rh4AG031300 Rh4AG033100 Rh4BG025300 Rh4CG034300 Rh4DG026500
rosa_wichuraiana	Rw4G002490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	410
AciI	CCGC	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	407
AdeI	CACNNNGTG	2 cut(s)	274, 286
AgeI	ACCGGT	1 cut(s)	200
AgsI	TTSAA	4 cut(s)	76, 244, 253, 292
AhlI	ACTAGT	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	373
AleI	CACNNNNGTG	1 cut(s)	201
AluBI	AGCT	4 cut(s)	44, 83, 136, 498
AluI	AGCT	4 cut(s)	44, 83, 136, 498
Alw21I	GWGCWC	2 cut(s)	198, 282
Alw26I	GTCTC	1 cut(s)	419
Alw44I	GTGCAC	1 cut(s)	278
ApaLI	GTGCAC	1 cut(s)	278
AsiGI	ACCGGT	1 cut(s)	200
AspS9I	GGNCC	2 cut(s)	317, 518
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	215, 518
AsuNHI	GCTAGC	1 cut(s)	494
AvaII	GGWCC	2 cut(s)	317, 518
BaeGI	GKGCMC	1 cut(s)	282
BbsI	GAAGAC	2 cut(s)	295, 410
Bbv12I	GWGCWC	2 cut(s)	198, 282
BccI	CCATC	1 cut(s)	457
BciT130I	CCWGG	1 cut(s)	375
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	419
BcuI	ACTAGT	1 cut(s)	88
BfaI	CTAG	4 cut(s)	89, 101, 411, 495
BfmI	CTRYAG	1 cut(s)	429
BglII	AGATCT	1 cut(s)	246
Bme1390I	CCNGG	2 cut(s)	218, 375
Bme18I	GGWCC	2 cut(s)	317, 518
BmgT120I	GGNCC	2 cut(s)	317, 518
BmrFI	CCNGG	2 cut(s)	218, 375
BmsI	GCATC	2 cut(s)	46, 342
BmtI	GCTAGC	1 cut(s)	498
BpiI	GAAGAC	2 cut(s)	295, 410
BpmI	CTGGAG	1 cut(s)	396
BpuMI	CCSGG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	148
BsaHI	GRCGYC	1 cut(s)	407
BsaJI	CCNNGG	3 cut(s)	23, 129, 373
BsaWI	WCCGGW	1 cut(s)	200
Bse118I	RCCGGY	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	23, 129, 373
BseGI	GGATG	2 cut(s)	61, 468
BseSI	GKGCMC	1 cut(s)	282
BshTI	ACCGGT	1 cut(s)	200
BsiHKAI	GWGCWC	2 cut(s)	198, 282
BsiSI	CCGG	3 cut(s)	201, 218, 356
BsmAI	GTCTC	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	198, 282
Bsp143I	GATC	2 cut(s)	246, 387
Bsp19I	CCATGG	1 cut(s)	23
BspACI	CCGC	1 cut(s)	231
BspHI	TCATGA	2 cut(s)	306, 393
BspOI	GCTAGC	1 cut(s)	498
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	23, 129, 373
BssMI	GATC	2 cut(s)	246, 387
BssNI	GRCGYC	1 cut(s)	407
BssT1I	CCWWGG	2 cut(s)	23, 129
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	3 cut(s)	272, 299, 433
Bst6I	CTCTTC	2 cut(s)	71, 525
BstACI	GRCGYC	1 cut(s)	407
BstBAI	YACGTR	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	496
BstDSI	CCRYGG	1 cut(s)	23
BstF5I	GGATG	2 cut(s)	61, 468
BstKTI	GATC	2 cut(s)	249, 390
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	2 cut(s)	246, 387
BstNI	CCWGG	1 cut(s)	375
BstSCI	CCNGG	2 cut(s)	216, 373
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	1 cut(s)	282
BstV2I	GAAGAC	2 cut(s)	295, 410
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BtgI	CCRYGG	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	61, 468
BtsIMutI	CAGTG	1 cut(s)	438
Cac8I	GCNNGC	1 cut(s)	496
CciI	TCATGA	2 cut(s)	306, 393
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	317, 518
CspAI	ACCGGT	1 cut(s)	200
CviAII	CATG	4 cut(s)	24, 52, 307, 394
CviJI	RGCY	7 cut(s)	44, 67, 83, 136, 141, 494, 498
CviKI_1	RGCY	7 cut(s)	44, 67, 83, 136, 141, 494, 498
DpnI	GATC	2 cut(s)	248, 389
DpnII	GATC	2 cut(s)	246, 387
DraIII	CACNNNGTG	2 cut(s)	274, 286
Eam1104I	CTCTTC	2 cut(s)	71, 525
EarI	CTCTTC	2 cut(s)	71, 525
Eco130I	CCWWGG	2 cut(s)	23, 129
Eco47I	GGWCC	2 cut(s)	317, 518
EcoRII	CCWGG	1 cut(s)	373
EcoT14I	CCWWGG	2 cut(s)	23, 129
ErhI	CCWWGG	2 cut(s)	23, 129
FaeI	CATG	4 cut(s)	27, 55, 310, 397
FaiI	YATR	6 cut(s)	25, 53, 86, 308, 369, 395
FatI	CATG	4 cut(s)	23, 51, 306, 393
FokI	GGATG	2 cut(s)	68, 475
FspBI	CTAG	4 cut(s)	89, 101, 411, 495
GsuI	CTGGAG	1 cut(s)	396
HapII	CCGG	3 cut(s)	201, 218, 356
Hin1I	GRCGYC	1 cut(s)	407
Hin1II	CATG	4 cut(s)	27, 55, 310, 397
HinfI	GANTC	2 cut(s)	37, 415
HpaII	CCGG	3 cut(s)	201, 218, 356
HphI	GGTGA	2 cut(s)	215, 518
Hpy166II	GTNNAC	2 cut(s)	280, 334
Hpy188I	TCNGA	1 cut(s)	529
Hpy188III	TCNNGA	4 cut(s)	244, 307, 325, 394
Hpy8I	GTNNAC	2 cut(s)	280, 334
HpyAV	CCTTC	2 cut(s)	173, 497
HpyCH4III	ACNGT	3 cut(s)	272, 299, 433
HpyCH4IV	ACGT	3 cut(s)	30, 147, 407
HpyCH4V	TGCA	1 cut(s)	280
HpySE526I	ACGT	3 cut(s)	30, 147, 407
Hsp92I	GRCGYC	1 cut(s)	407
Hsp92II	CATG	4 cut(s)	27, 55, 310, 397
Kzo9I	GATC	2 cut(s)	246, 387
LmnI	GCTCC	2 cut(s)	133, 193
LpnPI	CCDG	9 cut(s)	54, 175, 214, 231, 360, 369, 387, 404, 470
LweI	GCATC	2 cut(s)	46, 342
MaeI	CTAG	4 cut(s)	89, 101, 411, 495
MaeII	ACGT	3 cut(s)	30, 147, 407
MaeIII	GTNAC	3 cut(s)	96, 154, 506
MalI	GATC	2 cut(s)	248, 389
MboI	GATC	2 cut(s)	246, 387
MboII	GAAGA	6 cut(s)	88, 241, 295, 361, 382, 415
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	2 cut(s)	198, 282
MluCI	AATT	2 cut(s)	17, 264
MnlI	CCTC	5 cut(s)	97, 303, 347, 429, 468
MslI	CAYNNNNRTG	2 cut(s)	201, 350
MspA1I	CMGCKG	2 cut(s)	44, 231
MspI	CCGG	3 cut(s)	201, 218, 356
MspR9I	CCNGG	2 cut(s)	218, 375
MvaI	CCWGG	1 cut(s)	375
NciI	CCSGG	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	23
NdeII	GATC	2 cut(s)	246, 387
NheI	GCTAGC	1 cut(s)	494
NlaIII	CATG	4 cut(s)	27, 55, 310, 397
NmuCI	GTSAC	2 cut(s)	154, 506
OliI	CACNNNNGTG	1 cut(s)	201
PagI	TCATGA	2 cut(s)	306, 393
PfeI	GAWTC	2 cut(s)	37, 415
PinAI	ACCGGT	1 cut(s)	200
Ppu21I	YACGTR	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspPI	GGNCC	2 cut(s)	317, 518
PsuI	RGATCY	1 cut(s)	246
PvuII	CAGCTG	1 cut(s)	44
RseI	CAYNNNNRTG	2 cut(s)	201, 350
Sau3AI	GATC	2 cut(s)	246, 387
Sau96I	GGNCC	2 cut(s)	317, 518
ScrFI	CCNGG	2 cut(s)	218, 375
SduI	GDGCHC	2 cut(s)	198, 282
SfaNI	GCATC	2 cut(s)	46, 342
SfcI	CTRYAG	1 cut(s)	429
SgrAI	CRCCGGYG	1 cut(s)	200
SinI	GGWCC	2 cut(s)	317, 518
SmiMI	CAYNNNNRTG	2 cut(s)	201, 350
SpeI	ACTAGT	1 cut(s)	88
Sse9I	AATT	2 cut(s)	17, 264
SsiI	CCGC	1 cut(s)	231
SspMI	CTAG	4 cut(s)	89, 101, 411, 495
StyD4I	CCNGG	2 cut(s)	216, 373
StyI	CCWWGG	2 cut(s)	23, 129
TaaI	ACNGT	3 cut(s)	272, 299, 433
TaiI	ACGT	3 cut(s)	33, 150, 410
TaqI	TCGA	1 cut(s)	324
TasI	AATT	2 cut(s)	17, 264
TfiI	GAWTC	2 cut(s)	37, 415
TscAI	CASTG	1 cut(s)	438
TseFI	GTSAC	2 cut(s)	154, 506
Tsp45I	GTSAC	2 cut(s)	154, 506
TspDTI	ATGAA	3 cut(s)	295, 382, 410
TspRI	CASTG	1 cut(s)	438
VneI	GTGCAC	1 cut(s)	278
VpaK11BI	GGWCC	2 cut(s)	317, 518
XspI	CTAG	4 cut(s)	89, 101, 411, 495
ZraI	GACGTC	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.