DNA-directed RNA polymerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14660 AT4G14660 AT4G14660 |
| fragaria_vesca | FvH4_4g12050 FvH4_4g12050 |
| malus_domestica | MD16G1207700.v1.1 |
| prunus_persica | Prupe.1G030000_v2.0.a1 Prupe.1G030000_v2.0.a1 Prupe.1G030000_v2.0.a1 Prupe.1G030000_v2.0.a1 |
| pyrus_communis | pycom13g17890 pycom16g17510 |
| rosa_chinensis | RchiOBHm_Chr4g0390271 RchiOBHm_Chr4g0390761 |
| rosa_laevigata | RLG00000009929 |
| rosa_multiflora | Rmu_sc0004432.1_g000009 Rmu_sc0014620.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00336390 |
| rosa_rugosa | Rorug03G0328900 |
| rosa_samantha | Rh4AG031300 Rh4AG033100 Rh4BG025300 Rh4CG034300 Rh4DG026500 |
| rosa_wichuraiana | Rw4G002490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 100 |
| AciI | CCGC | 1 cut(s) | 231 |
| AclWI | GGATC | 1 cut(s) | 141 |
| AcsI | RAATTY | 2 cut(s) | 107, 479 |
| AcuI | CTGAAG | 2 cut(s) | 311, 368 |
| AfaI | GTAC | 1 cut(s) | 15 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 100 |
| AgsI | TTSAA | 3 cut(s) | 244, 326, 467 |
| AjnI | CCWGG | 1 cut(s) | 373 |
| AluBI | AGCT | 3 cut(s) | 247, 312, 346 |
| AluI | AGCT | 3 cut(s) | 247, 312, 346 |
| AlwI | GGATC | 1 cut(s) | 141 |
| AoxI | GGCC | 1 cut(s) | 316 |
| ApoI | RAATTY | 2 cut(s) | 107, 479 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 425 |
| AspS9I | GGNCC | 4 cut(s) | 91, 317, 453, 518 |
| AvaII | GGWCC | 3 cut(s) | 91, 453, 518 |
| BceAI | ACGGC | 1 cut(s) | 7 |
| BciT130I | CCWGG | 1 cut(s) | 375 |
| BciVI | GTATCC | 1 cut(s) | 134 |
| BfaI | CTAG | 1 cut(s) | 515 |
| BfuI | GTATCC | 1 cut(s) | 134 |
| BisI | GCNGC | 1 cut(s) | 232 |
| BlsI | GCNGC | 1 cut(s) | 233 |
| Bme1390I | CCNGG | 1 cut(s) | 375 |
| Bme18I | GGWCC | 3 cut(s) | 91, 453, 518 |
| BmgT120I | GGNCC | 4 cut(s) | 91, 317, 453, 518 |
| BmiI | GGNNCC | 1 cut(s) | 454 |
| BmrFI | CCNGG | 1 cut(s) | 375 |
| BmrI | ACTGGG | 2 cut(s) | 210, 314 |
| BmsI | GCATC | 3 cut(s) | 60, 122, 342 |
| BmuI | ACTGGG | 2 cut(s) | 210, 314 |
| BpmI | CTGGAG | 1 cut(s) | 185 |
| BsaJI | CCNNGG | 3 cut(s) | 23, 129, 374 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 57, 87 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 100 |
| Bse1I | ACTGG | 4 cut(s) | 205, 218, 320, 521 |
| BseBI | CCWGG | 1 cut(s) | 375 |
| BseDI | CCNNGG | 3 cut(s) | 23, 129, 374 |
| BseGI | GGATG | 3 cut(s) | 36, 109, 211 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 100 |
| BseMII | CTCAG | 1 cut(s) | 36 |
| BseNI | ACTGG | 4 cut(s) | 205, 218, 320, 521 |
| BshFI | GGCC | 1 cut(s) | 318 |
| BslFI | GGGAC | 1 cut(s) | 466 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 100 |
| BsmFI | GGGAC | 1 cut(s) | 466 |
| BsnI | GGCC | 1 cut(s) | 318 |
| Bsp143I | GATC | 2 cut(s) | 133, 261 |
| BspACI | CCGC | 1 cut(s) | 231 |
| BspANI | GGCC | 1 cut(s) | 318 |
| BspCNI | CTCAG | 1 cut(s) | 37 |
| BspHI | TCATGA | 1 cut(s) | 393 |
| BspLI | GGNNCC | 1 cut(s) | 454 |
| BspPI | GGATC | 1 cut(s) | 141 |
| BsrI | ACTGG | 4 cut(s) | 205, 218, 320, 521 |
| BssECI | CCNNGG | 3 cut(s) | 23, 129, 374 |
| BssMI | GATC | 2 cut(s) | 133, 261 |
| BssT1I | CCWWGG | 1 cut(s) | 129 |
| Bst2UI | CCWGG | 1 cut(s) | 375 |
| Bst4CI | ACNGT | 2 cut(s) | 18, 433 |
| BstC8I | GCNNGC | 1 cut(s) | 504 |
| BstDEI | CTNAG | 4 cut(s) | 45, 308, 342, 528 |
| BstDSI | CCRYGG | 1 cut(s) | 23 |
| BstF5I | GGATG | 3 cut(s) | 36, 109, 211 |
| BstKTI | GATC | 2 cut(s) | 136, 264 |
| BstMBI | GATC | 2 cut(s) | 133, 261 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 352 |
| BstNI | CCWGG | 1 cut(s) | 375 |
| BstNSI | RCATGY | 1 cut(s) | 506 |
| BstSCI | CCNGG | 1 cut(s) | 373 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 136 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| BsuI | GTATCC | 1 cut(s) | 134 |
| BsuRI | GGCC | 1 cut(s) | 318 |
| BtgI | CCRYGG | 1 cut(s) | 23 |
| BtsCI | GGATG | 3 cut(s) | 36, 109, 211 |
| Cac8I | GCNNGC | 1 cut(s) | 504 |
| CciI | TCATGA | 1 cut(s) | 393 |
| Cfr13I | GGNCC | 4 cut(s) | 91, 317, 453, 518 |
| Csp6I | GTAC | 1 cut(s) | 14 |
| CviAII | CATG | 3 cut(s) | 296, 394, 503 |
| CviJI | RGCY | 7 cut(s) | 51, 247, 312, 318, 346, 426, 463 |
| CviKI_1 | RGCY | 7 cut(s) | 51, 247, 312, 318, 346, 426, 463 |
| CviQI | GTAC | 1 cut(s) | 14 |
| DdeI | CTNAG | 4 cut(s) | 45, 308, 342, 528 |
| DpnI | GATC | 2 cut(s) | 135, 263 |
| DpnII | GATC | 2 cut(s) | 133, 261 |
| Eco130I | CCWWGG | 1 cut(s) | 129 |
| Eco47I | GGWCC | 3 cut(s) | 91, 453, 518 |
| Eco57I | CTGAAG | 2 cut(s) | 311, 368 |
| EcoRII | CCWGG | 1 cut(s) | 373 |
| EcoT14I | CCWWGG | 1 cut(s) | 129 |
| ErhI | CCWWGG | 1 cut(s) | 129 |
| FaeI | CATG | 3 cut(s) | 299, 397, 506 |
| FaiI | YATR | 8 cut(s) | 59, 173, 198, 297, 363, 369, 395, 504 |
| FaqI | GGGAC | 1 cut(s) | 466 |
| FatI | CATG | 3 cut(s) | 295, 393, 502 |
| Fnu4HI | GCNGC | 1 cut(s) | 232 |
| FokI | GGATG | 3 cut(s) | 23, 116, 218 |
| Fsp4HI | GCNGC | 1 cut(s) | 232 |
| FspBI | CTAG | 1 cut(s) | 515 |
| GluI | GCNGC | 1 cut(s) | 232 |
| GsuI | CTGGAG | 1 cut(s) | 185 |
| HaeIII | GGCC | 1 cut(s) | 318 |
| Hin1II | CATG | 3 cut(s) | 299, 397, 506 |
| HindIII | AAGCTT | 1 cut(s) | 245 |
| HinfI | GANTC | 2 cut(s) | 382, 467 |
| Hpy166II | GTNNAC | 1 cut(s) | 280 |
| Hpy188I | TCNGA | 2 cut(s) | 291, 472 |
| Hpy188III | TCNNGA | 3 cut(s) | 117, 164, 394 |
| Hpy8I | GTNNAC | 1 cut(s) | 280 |
| HpyAV | CCTTC | 2 cut(s) | 250, 415 |
| HpyCH4III | ACNGT | 2 cut(s) | 18, 433 |
| HpyCH4V | TGCA | 3 cut(s) | 113, 502, 506 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 352 |
| HpyF3I | CTNAG | 4 cut(s) | 45, 308, 342, 528 |
| Hsp92II | CATG | 3 cut(s) | 299, 397, 506 |
| Kzo9I | GATC | 2 cut(s) | 133, 261 |
| LmnI | GCTCC | 2 cut(s) | 78, 193 |
| LweI | GCATC | 3 cut(s) | 60, 122, 342 |
| MaeI | CTAG | 1 cut(s) | 515 |
| MaeIII | GTNAC | 1 cut(s) | 235 |
| MalI | GATC | 2 cut(s) | 135, 263 |
| MboI | GATC | 2 cut(s) | 133, 261 |
| MboII | GAAGA | 1 cut(s) | 361 |
| MfeI | CAATTG | 1 cut(s) | 84 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MluCI | AATT | 4 cut(s) | 84, 107, 414, 479 |
| MmeI | TCCRAC | 1 cut(s) | 118 |
| MnlI | CCTC | 3 cut(s) | 155, 172, 262 |
| MroXI | GAANNNNTTC | 1 cut(s) | 425 |
| MspR9I | CCNGG | 1 cut(s) | 375 |
| MunI | CAATTG | 1 cut(s) | 84 |
| MvaI | CCWGG | 1 cut(s) | 375 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 352 |
| NdeII | GATC | 2 cut(s) | 133, 261 |
| NlaIII | CATG | 3 cut(s) | 299, 397, 506 |
| NlaIV | GGNNCC | 1 cut(s) | 454 |
| NmuCI | GTSAC | 1 cut(s) | 235 |
| NspI | RCATGY | 1 cut(s) | 506 |
| PaeI | GCATGC | 1 cut(s) | 506 |
| PagI | TCATGA | 1 cut(s) | 393 |
| PdmI | GAANNNNTTC | 1 cut(s) | 425 |
| PfeI | GAWTC | 2 cut(s) | 382, 467 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 100 |
| PkrI | GCNGC | 1 cut(s) | 233 |
| Psp6I | CCWGG | 1 cut(s) | 373 |
| PspGI | CCWGG | 1 cut(s) | 373 |
| PspN4I | GGNNCC | 1 cut(s) | 454 |
| PspPI | GGNCC | 4 cut(s) | 91, 317, 453, 518 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 1 cut(s) | 15 |
| RsaNI | GTAC | 1 cut(s) | 14 |
| SatI | GCNGC | 1 cut(s) | 232 |
| Sau3AI | GATC | 2 cut(s) | 133, 261 |
| Sau96I | GGNCC | 4 cut(s) | 91, 317, 453, 518 |
| ScrFI | CCNGG | 1 cut(s) | 375 |
| SetI | ASST | 5 cut(s) | 147, 242, 249, 314, 348 |
| SfaNI | GCATC | 3 cut(s) | 60, 122, 342 |
| SinI | GGWCC | 3 cut(s) | 91, 453, 518 |
| SphI | GCATGC | 1 cut(s) | 506 |
| Sse9I | AATT | 4 cut(s) | 84, 107, 414, 479 |
| SsiI | CCGC | 1 cut(s) | 231 |
| SspMI | CTAG | 1 cut(s) | 515 |
| StyD4I | CCNGG | 1 cut(s) | 373 |
| StyI | CCWWGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 2 cut(s) | 18, 433 |
| TasI | AATT | 4 cut(s) | 84, 107, 414, 479 |
| TatI | WGTACW | 1 cut(s) | 13 |
| TauI | GCSGC | 1 cut(s) | 234 |
| TfiI | GAWTC | 2 cut(s) | 382, 467 |
| TseFI | GTSAC | 1 cut(s) | 235 |
| Tsp45I | GTSAC | 1 cut(s) | 235 |
| TspDTI | ATGAA | 4 cut(s) | 120, 382, 410, 430 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 100 |
| VpaK11BI | GGWCC | 3 cut(s) | 91, 453, 518 |
| XapI | RAATTY | 2 cut(s) | 107, 479 |
| XceI | RCATGY | 1 cut(s) | 506 |
| XmnI | GAANNNNTTC | 1 cut(s) | 425 |
| XspI | CTAG | 1 cut(s) | 515 |