DNA-directed RNA polymerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14660 AT4G14660 AT4G14660 |
| fragaria_vesca | FvH4_4g12050 FvH4_4g12050 |
| malus_domestica | MD16G1207700.v1.1 |
| prunus_persica | Prupe.1G030000_v2.0.a1 Prupe.1G030000_v2.0.a1 Prupe.1G030000_v2.0.a1 Prupe.1G030000_v2.0.a1 |
| pyrus_communis | pycom13g17890 pycom16g17510 |
| rosa_chinensis | RchiOBHm_Chr4g0390271 RchiOBHm_Chr4g0390761 |
| rosa_laevigata | RLG00000009929 |
| rosa_multiflora | Rmu_sc0004432.1_g000009 Rmu_sc0014620.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00336390 |
| rosa_rugosa | Rorug03G0328900 |
| rosa_samantha | Rh4AG031300 Rh4AG033100 Rh4BG025300 Rh4CG034300 Rh4DG026500 |
| rosa_wichuraiana | Rw4G002490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 94 |
| AclWI | GGATC | 1 cut(s) | 547 |
| AcsI | RAATTY | 1 cut(s) | 488 |
| AcuI | CTGAAG | 2 cut(s) | 66, 312 |
| AfaI | GTAC | 2 cut(s) | 195, 289 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 47, 100, 536 |
| AgsI | TTSAA | 5 cut(s) | 22, 244, 350, 397, 476 |
| AjnI | CCWGG | 2 cut(s) | 51, 374 |
| Alw21I | GWGCWC | 2 cut(s) | 75, 283 |
| Alw44I | GTGCAC | 1 cut(s) | 279 |
| AlwI | GGATC | 1 cut(s) | 547 |
| AoxI | GGCC | 2 cut(s) | 49, 317 |
| ApaLI | GTGCAC | 1 cut(s) | 279 |
| ApoI | RAATTY | 1 cut(s) | 488 |
| AspLEI | GCGC | 1 cut(s) | 233 |
| AspS9I | GGNCC | 3 cut(s) | 318, 462, 527 |
| AvaII | GGWCC | 2 cut(s) | 462, 527 |
| BaeGI | GKGCMC | 2 cut(s) | 59, 283 |
| Bbv12I | GWGCWC | 2 cut(s) | 75, 283 |
| BciT130I | CCWGG | 2 cut(s) | 53, 376 |
| BfaI | CTAG | 1 cut(s) | 165 |
| BfoI | RGCGCY | 1 cut(s) | 234 |
| BglII | AGATCT | 1 cut(s) | 262 |
| Bme1390I | CCNGG | 2 cut(s) | 53, 376 |
| Bme18I | GGWCC | 2 cut(s) | 462, 527 |
| BmgT120I | GGNCC | 3 cut(s) | 318, 462, 527 |
| BmiI | GGNNCC | 1 cut(s) | 463 |
| BmrFI | CCNGG | 2 cut(s) | 53, 376 |
| BmrI | ACTGGG | 1 cut(s) | 210 |
| BmuI | ACTGGG | 1 cut(s) | 210 |
| BpuEI | CTTGAG | 1 cut(s) | 329 |
| BsaJI | CCNNGG | 2 cut(s) | 52, 375 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 47, 100, 536 |
| Bse1I | ACTGG | 3 cut(s) | 29, 205, 530 |
| Bse3DI | GCAATG | 1 cut(s) | 450 |
| BseBI | CCWGG | 2 cut(s) | 53, 376 |
| BseDI | CCNNGG | 2 cut(s) | 52, 375 |
| BseGI | GGATG | 2 cut(s) | 109, 211 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 47, 100, 536 |
| BseMI | GCAATG | 1 cut(s) | 450 |
| BseNI | ACTGG | 3 cut(s) | 29, 205, 530 |
| BseSI | GKGCMC | 2 cut(s) | 59, 283 |
| BshFI | GGCC | 2 cut(s) | 51, 319 |
| BsiHKAI | GWGCWC | 2 cut(s) | 75, 283 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 47, 100, 536 |
| BsnI | GGCC | 2 cut(s) | 51, 319 |
| Bsp1286I | GDGCHC | 3 cut(s) | 59, 75, 283 |
| Bsp143I | GATC | 2 cut(s) | 262, 539 |
| BspACI | CCGC | 1 cut(s) | 94 |
| BspANI | GGCC | 2 cut(s) | 51, 319 |
| BspLI | GGNNCC | 1 cut(s) | 463 |
| BspPI | GGATC | 1 cut(s) | 547 |
| BsrDI | GCAATG | 1 cut(s) | 450 |
| BsrI | ACTGG | 3 cut(s) | 29, 205, 530 |
| BssECI | CCNNGG | 2 cut(s) | 52, 375 |
| BssMI | GATC | 2 cut(s) | 262, 539 |
| Bst2UI | CCWGG | 2 cut(s) | 53, 376 |
| Bst4CI | ACNGT | 2 cut(s) | 366, 442 |
| Bst6I | CTCTTC | 1 cut(s) | 347 |
| BstC8I | GCNNGC | 1 cut(s) | 98 |
| BstDEI | CTNAG | 2 cut(s) | 266, 420 |
| BstEII | GGTNACC | 1 cut(s) | 141 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 45 |
| BstF5I | GGATG | 2 cut(s) | 109, 211 |
| BstH2I | RGCGCY | 1 cut(s) | 234 |
| BstHHI | GCGC | 1 cut(s) | 233 |
| BstKTI | GATC | 2 cut(s) | 265, 542 |
| BstMBI | GATC | 2 cut(s) | 262, 539 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 230 |
| BstNI | CCWGG | 2 cut(s) | 53, 376 |
| BstPI | GGTNACC | 1 cut(s) | 141 |
| BstSCI | CCNGG | 2 cut(s) | 51, 374 |
| BstSLI | GKGCMC | 2 cut(s) | 59, 283 |
| BstX2I | RGATCY | 1 cut(s) | 262 |
| BstYI | RGATCY | 1 cut(s) | 262 |
| BsuRI | GGCC | 2 cut(s) | 51, 319 |
| BtsCI | GGATG | 2 cut(s) | 109, 211 |
| Cac8I | GCNNGC | 1 cut(s) | 98 |
| CfoI | GCGC | 1 cut(s) | 233 |
| Cfr13I | GGNCC | 3 cut(s) | 318, 462, 527 |
| Csp6I | GTAC | 2 cut(s) | 194, 288 |
| CviAII | CATG | 2 cut(s) | 235, 524 |
| CviJI | RGCY | 4 cut(s) | 51, 319, 472, 497 |
| CviKI_1 | RGCY | 4 cut(s) | 51, 319, 472, 497 |
| CviQI | GTAC | 2 cut(s) | 194, 288 |
| DdeI | CTNAG | 2 cut(s) | 266, 420 |
| DpnI | GATC | 2 cut(s) | 264, 541 |
| DpnII | GATC | 2 cut(s) | 262, 539 |
| DraI | TTTAAA | 1 cut(s) | 217 |
| Eam1104I | CTCTTC | 1 cut(s) | 347 |
| EarI | CTCTTC | 1 cut(s) | 347 |
| EciI | GGCGGA | 1 cut(s) | 83 |
| Eco147I | AGGCCT | 1 cut(s) | 51 |
| Eco47I | GGWCC | 2 cut(s) | 462, 527 |
| Eco57I | CTGAAG | 2 cut(s) | 66, 312 |
| Eco91I | GGTNACC | 1 cut(s) | 141 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 45 |
| EcoO65I | GGTNACC | 1 cut(s) | 141 |
| EcoRII | CCWGG | 2 cut(s) | 51, 374 |
| FaeI | CATG | 2 cut(s) | 238, 527 |
| FaiI | YATR | 6 cut(s) | 11, 174, 198, 236, 370, 525 |
| FatI | CATG | 2 cut(s) | 234, 523 |
| FokI | GGATG | 2 cut(s) | 116, 218 |
| FspBI | CTAG | 1 cut(s) | 165 |
| GlaI | GCGC | 1 cut(s) | 232 |
| HaeII | RGCGCY | 1 cut(s) | 234 |
| HaeIII | GGCC | 2 cut(s) | 51, 319 |
| HhaI | GCGC | 1 cut(s) | 233 |
| Hin1II | CATG | 2 cut(s) | 238, 527 |
| Hin6I | GCGC | 1 cut(s) | 231 |
| HinP1I | GCGC | 1 cut(s) | 231 |
| HinfI | GANTC | 2 cut(s) | 383, 406 |
| Hpy166II | GTNNAC | 2 cut(s) | 281, 509 |
| Hpy188III | TCNNGA | 3 cut(s) | 165, 308, 537 |
| Hpy8I | GTNNAC | 2 cut(s) | 281, 509 |
| HpyAV | CCTTC | 3 cut(s) | 41, 156, 250 |
| HpyCH4III | ACNGT | 2 cut(s) | 366, 442 |
| HpyCH4V | TGCA | 1 cut(s) | 281 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 230 |
| HpyF3I | CTNAG | 2 cut(s) | 266, 420 |
| Hsp92II | CATG | 2 cut(s) | 238, 527 |
| HspAI | GCGC | 1 cut(s) | 231 |
| Kzo9I | GATC | 2 cut(s) | 262, 539 |
| LmnI | GCTCC | 1 cut(s) | 78 |
| MaeI | CTAG | 1 cut(s) | 165 |
| MaeIII | GTNAC | 2 cut(s) | 141, 436 |
| MalI | GATC | 2 cut(s) | 264, 541 |
| MboI | GATC | 2 cut(s) | 262, 539 |
| MboII | GAAGA | 1 cut(s) | 334 |
| MflI | RGATCY | 1 cut(s) | 262 |
| MhlI | GDGCHC | 3 cut(s) | 59, 75, 283 |
| MluCI | AATT | 2 cut(s) | 36, 488 |
| MmeI | TCCRAC | 1 cut(s) | 236 |
| MnlI | CCTC | 2 cut(s) | 173, 263 |
| MseI | TTAA | 1 cut(s) | 216 |
| MspR9I | CCNGG | 2 cut(s) | 53, 376 |
| MvaI | CCWGG | 2 cut(s) | 53, 376 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 230 |
| NdeII | GATC | 2 cut(s) | 262, 539 |
| NlaIII | CATG | 2 cut(s) | 238, 527 |
| NlaIV | GGNNCC | 1 cut(s) | 463 |
| NmuCI | GTSAC | 1 cut(s) | 436 |
| PceI | AGGCCT | 1 cut(s) | 51 |
| PfeI | GAWTC | 2 cut(s) | 383, 406 |
| Psp6I | CCWGG | 2 cut(s) | 51, 374 |
| PspEI | GGTNACC | 1 cut(s) | 141 |
| PspGI | CCWGG | 2 cut(s) | 51, 374 |
| PspN4I | GGNNCC | 1 cut(s) | 463 |
| PspPI | GGNCC | 3 cut(s) | 318, 462, 527 |
| PsuI | RGATCY | 1 cut(s) | 262 |
| RsaI | GTAC | 2 cut(s) | 195, 289 |
| RsaNI | GTAC | 2 cut(s) | 194, 288 |
| SaqAI | TTAA | 1 cut(s) | 216 |
| Sau3AI | GATC | 2 cut(s) | 262, 539 |
| Sau96I | GGNCC | 3 cut(s) | 318, 462, 527 |
| ScrFI | CCNGG | 2 cut(s) | 53, 376 |
| SduI | GDGCHC | 3 cut(s) | 59, 75, 283 |
| SetI | ASST | 7 cut(s) | 148, 195, 242, 249, 274, 289, 436 |
| SinI | GGWCC | 2 cut(s) | 462, 527 |
| SmlI | CTYRAG | 1 cut(s) | 308 |
| SmoI | CTYRAG | 1 cut(s) | 308 |
| Sse9I | AATT | 2 cut(s) | 36, 488 |
| SseBI | AGGCCT | 1 cut(s) | 51 |
| SsiI | CCGC | 1 cut(s) | 94 |
| SspMI | CTAG | 1 cut(s) | 165 |
| StuI | AGGCCT | 1 cut(s) | 51 |
| StyD4I | CCNGG | 2 cut(s) | 51, 374 |
| TaaI | ACNGT | 2 cut(s) | 366, 442 |
| TasI | AATT | 2 cut(s) | 36, 488 |
| TfiI | GAWTC | 2 cut(s) | 383, 406 |
| Tru1I | TTAA | 1 cut(s) | 216 |
| Tru9I | TTAA | 1 cut(s) | 216 |
| TseFI | GTSAC | 1 cut(s) | 436 |
| Tsp45I | GTSAC | 1 cut(s) | 436 |
| TspDTI | ATGAA | 1 cut(s) | 439 |
| VneI | GTGCAC | 1 cut(s) | 279 |
| VpaK11BI | GGWCC | 2 cut(s) | 462, 527 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 45 |
| XapI | RAATTY | 1 cut(s) | 488 |
| XbaI | TCTAGA | 1 cut(s) | 164 |
| XspI | CTAG | 1 cut(s) | 165 |