Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007390

Physical Location & Seq

Genomic Coordinates Reverse (-)

15750110 .. 15752864

Gene Structure 2755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g12050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTTCTCAAAACTGAGTTGCAATGGAATGTTGTAATCCCTGCTGAAAGCTTGGATGCGAAGGGATTAATGCTCCAAAAGGCAATTTTTGTTCGGCTATTGGATGATTTTGCAAAGAGAAAGGCTACTAAAGACCTCGGATACCTTCTTGCTCTCACAACTGTTGAGAAGATAGGAGAGGGAAAAGTCAGGCAGCATACTGGGGATGTGCTTTTTCCAGTTACCTTCTGTGCCATCTCCTTTAAGATTTTCAGAGGAGAGATCTTAGAGGGAGTAGTGCAGAACGTGCTCAAGCAGGGAGTTATATTGAGATGTGGTCCAATTGAGAATGTGTATCTCTCTTCTTCAAAAATGCCTGATTACAACTATGTTCCAGGGGAGAATCCTGTCTTCTTGAATGACAAGATGTCTAAGATTGAAAAAGGTGTCACCCTACGTTGCATTGTCATTGGAGCTAAGTGGCTTGAGGCAGAGAGGGAATTTCAGGCGTTGGTTGGCTTACATGCTGATTATCTAGGACCAGTCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

SHS2_Rpb7-N

Protein Analysis

177

Amino Acids

19.68

Weight (kDa)

8.38

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SHS2_Rpb7-N	PF03876	10 - 68	6.7e-06	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14660 AT4G14660 AT4G14660
fragaria_vesca	FvH4_4g12050 FvH4_4g12050
malus_domestica	MD16G1207700.v1.1
prunus_persica	Prupe.1G030000_v2.0.a1 Prupe.1G030000_v2.0.a1 Prupe.1G030000_v2.0.a1 Prupe.1G030000_v2.0.a1
pyrus_communis	pycom13g17890 pycom16g17510
rosa_chinensis	RchiOBHm_Chr4g0390271 RchiOBHm_Chr4g0390761
rosa_laevigata	RLG00000009929
rosa_multiflora	Rmu_sc0004432.1_g000009 Rmu_sc0014620.1_g000003
rosa_roxburghii	Rroxscaffold_5G00336390
rosa_rugosa	Rorug03G0328900
rosa_samantha	Rh4AG031300 Rh4AG033100 Rh4BG025300 Rh4CG034300 Rh4DG026500
rosa_wichuraiana	Rw4G002490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	479
AgsI	TTSAA	3 cut(s)	348, 397, 419
AhdI	GACNNNNNGTC	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	2 cut(s)	51, 455
AluI	AGCT	2 cut(s)	51, 455
Alw21I	GWGCWC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	193
ApoI	RAATTY	1 cut(s)	479
AseI	ATTAAT	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	317, 518
AsuHPI	GGTGA	1 cut(s)	421
AvaII	GGWCC	2 cut(s)	317, 518
BbsI	GAAGAC	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	375
BciVI	GTATCC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	515
BfuI	GTATCC	1 cut(s)	134
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	2 cut(s)	317, 518
BmeRI	GACNNNNNGTC	1 cut(s)	406
BmgT120I	GGNCC	2 cut(s)	317, 518
BmrFI	CCNGG	1 cut(s)	375
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	46
BmuI	ACTGGG	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	382
BpuEI	CTTGAG	2 cut(s)	275, 485
BsaJI	CCNNGG	2 cut(s)	136, 374
Bse1I	ACTGG	3 cut(s)	205, 218, 521
Bse3DI	GCAATG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	136, 374
BseGI	GGATG	3 cut(s)	61, 109, 211
BseMI	GCAATG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	3 cut(s)	205, 218, 521
BseRI	GAGGAG	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	205
BsgI	GTGCAG	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	509
BsmFI	GGGAC	1 cut(s)	509
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	1 cut(s)	261
BspCNI	CTCAG	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	29
BsrI	ACTGG	3 cut(s)	205, 218, 521
BssECI	CCNNGG	2 cut(s)	136, 374
BssMI	GATC	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	1 cut(s)	346
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstDEI	CTNAG	5 cut(s)	15, 265, 411, 456, 528
BstF5I	GGATG	3 cut(s)	61, 109, 211
BstKTI	GATC	1 cut(s)	264
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	373
BstV1I	GCAGC	1 cut(s)	205
BstV2I	GAAGAC	1 cut(s)	382
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuI	GTATCC	1 cut(s)	134
BtsCI	GGATG	3 cut(s)	61, 109, 211
Cfr13I	GGNCC	2 cut(s)	317, 518
CviAII	CATG	1 cut(s)	503
CviJI	RGCY	6 cut(s)	51, 97, 125, 455, 463, 498
CviKI_1	RGCY	6 cut(s)	51, 97, 125, 455, 463, 498
DdeI	CTNAG	5 cut(s)	15, 265, 411, 456, 528
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
DriI	GACNNNNNGTC	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	346
Eam1105I	GACNNNNNGTC	1 cut(s)	406
EarI	CTCTTC	1 cut(s)	346
Eco47I	GGWCC	2 cut(s)	317, 518
EcoRII	CCWGG	1 cut(s)	373
FaeI	CATG	1 cut(s)	506
FaiI	YATR	4 cut(s)	198, 305, 369, 504
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	1 cut(s)	502
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	3 cut(s)	68, 116, 218
Fsp4HI	GCNGC	1 cut(s)	194
FspBI	CTAG	1 cut(s)	515
GluI	GCNGC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	506
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	1 cut(s)	382
HphI	GGTGA	1 cut(s)	421
Hpy188I	TCNGA	2 cut(s)	140, 254
Hpy188III	TCNNGA	1 cut(s)	394
HpyAV	CCTTC	3 cut(s)	55, 155, 235
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	2 cut(s)	285, 436
HpyCH4V	TGCA	4 cut(s)	22, 113, 280, 441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	5 cut(s)	15, 265, 411, 456, 528
HpySE526I	ACGT	2 cut(s)	285, 436
Hsp92II	CATG	1 cut(s)	506
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	78, 452
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	2 cut(s)	285, 436
MaeIII	GTNAC	2 cut(s)	220, 427
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	4 cut(s)	181, 333, 336, 382
MfeI	CAATTG	1 cut(s)	321
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	3 cut(s)	84, 321, 479
MnlI	CCTC	6 cut(s)	146, 172, 248, 262, 460, 468
MseI	TTAA	2 cut(s)	68, 243
MspR9I	CCNGG	1 cut(s)	375
MunI	CAATTG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	286
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	1 cut(s)	506
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	506
PfeI	GAWTC	1 cut(s)	382
PkrI	GCNGC	1 cut(s)	195
PshBI	ATTAAT	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspPI	GGNCC	2 cut(s)	317, 518
PsuI	RGATCY	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	68, 243
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	2 cut(s)	317, 518
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	8 cut(s)	53, 138, 147, 227, 288, 427, 439, 457
SfaNI	GCATC	1 cut(s)	46
SinI	GGWCC	2 cut(s)	317, 518
SmlI	CTYRAG	2 cut(s)	290, 464
SmoI	CTYRAG	2 cut(s)	290, 464
Sse9I	AATT	3 cut(s)	84, 321, 479
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	2 cut(s)	288, 439
TasI	AATT	3 cut(s)	84, 321, 479
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	2 cut(s)	68, 243
Tru9I	TTAA	2 cut(s)	68, 243
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	427
VpaK11BI	GGWCC	2 cut(s)	317, 518
VspI	ATTAAT	1 cut(s)	68
XapI	RAATTY	1 cut(s)	479
XceI	RCATGY	1 cut(s)	506
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.