Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007390

Physical Location & Seq

Genomic Coordinates Reverse (-)

13870912 .. 13871442

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g17890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTTCTGAAAGTACAATTGCCCTGGAACGTTGTAATCCCTGCTGAGAGCTTGGATATGAAAGGGTTGATGCTCCAAAAGTCAATTGTTATCCGCTTGCTGGAGGACTTTGCATCAAGAAAGGCAACCAAAGATCTGGGCTACTATCTCGCTCTCACAACTCTGGAGAGTGTTGGAGAGGGTAAAGTGAGGCAGCAGACTGGGGATGTTCTGTTTCCAGTTGTTTTTAGCGCGGTTACCTTCAAGCTTTTCAGAGGAGAGATTGCTGAGGGGGTTGTCCACAAGGTTCTGAAGCATGGAGTTTTCCTGAGTTGCGGCCCGGTTGAAAACATGTATCTCTCAAAGATGAAGATGCCGGATTATAATTATGTGCCGGGGGAGAATCCTGTATTCATGAACAGCAAGATGTCAAAAATTGAGAAAGGCACGACCGTACGATTCATTGTTATCGGGACTAAGTGGCTTGAGGCACAAAGGGAATTTCAGGCTTTGGTTGGCTTGCATGCAGATTATCTCGGACCGGTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

SHS2_Rpb7-N

Protein Analysis

177

Amino Acids

19.75

Weight (kDa)

9.12

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14660 AT4G14660 AT4G14660
fragaria_vesca	FvH4_4g12050 FvH4_4g12050
malus_domestica	MD16G1207700.v1.1
prunus_persica	Prupe.1G030000_v2.0.a1 Prupe.1G030000_v2.0.a1 Prupe.1G030000_v2.0.a1 Prupe.1G030000_v2.0.a1
pyrus_communis	pycom13g17890 pycom16g17510
rosa_chinensis	RchiOBHm_Chr4g0390271 RchiOBHm_Chr4g0390761
rosa_laevigata	RLG00000009929
rosa_multiflora	Rmu_sc0004432.1_g000009 Rmu_sc0014620.1_g000003
rosa_roxburghii	Rroxscaffold_5G00336390
rosa_rugosa	Rorug03G0328900
rosa_samantha	Rh4AG031300 Rh4AG033100 Rh4BG025300 Rh4CG034300 Rh4DG026500
rosa_wichuraiana	Rw4G002490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
AccII	CGCG	1 cut(s)	233
AciI	CCGC	3 cut(s)	94, 233, 315
AclI	AACGTT	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	479
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	2 cut(s)	15, 435
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflIII	ACRYGT	1 cut(s)	330
AgeI	ACCGGT	1 cut(s)	520
AgsI	TTSAA	2 cut(s)	244, 326
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	2 cut(s)	51, 247
AluI	AGCT	2 cut(s)	51, 247
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	193
ApoI	RAATTY	1 cut(s)	479
AsiGI	ACCGGT	1 cut(s)	520
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	317, 518
AsuC2I	CCSGG	2 cut(s)	320, 375
AvaII	GGWCC	1 cut(s)	518
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	25
BcnI	CCSGG	2 cut(s)	320, 375
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	2 cut(s)	194, 316
BlsI	GCNGC	2 cut(s)	195, 317
Bme1390I	CCNGG	3 cut(s)	25, 320, 375
Bme18I	GGWCC	1 cut(s)	518
BmgT120I	GGNCC	2 cut(s)	317, 518
BmrFI	CCNGG	3 cut(s)	25, 320, 375
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	3 cut(s)	60, 122, 342
BmuI	ACTGGG	1 cut(s)	210
BpmI	CTGGAG	2 cut(s)	122, 185
Bpu10I	CCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	485
BpuMI	CCSGG	2 cut(s)	320, 375
BsaJI	CCNNGG	2 cut(s)	23, 374
BsaWI	WCCGGW	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse118I	RCCGGY	1 cut(s)	520
Bse1I	ACTGG	2 cut(s)	205, 218
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	2 cut(s)	23, 374
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	3 cut(s)	36, 258, 299
BseNI	ACTGG	2 cut(s)	205, 218
BseRI	GAGGAG	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	233
Bsh1285I	CGRYCG	1 cut(s)	432
BshFI	GGCC	1 cut(s)	318
BshTI	ACCGGT	1 cut(s)	520
BsiEI	CGRYCG	1 cut(s)	432
BsiSI	CCGG	4 cut(s)	320, 356, 374, 521
BsiWI	CGTACG	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	3 cut(s)	94, 233, 315
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	3 cut(s)	37, 259, 300
BspFNI	CGCG	1 cut(s)	233
BspHI	TCATGA	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	205, 218
BssAI	RCCGGY	1 cut(s)	520
BssECI	CCNNGG	2 cut(s)	23, 374
BssMI	GATC	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	433
BstC8I	GCNNGC	3 cut(s)	98, 500, 504
BstDEI	CTNAG	5 cut(s)	45, 267, 308, 456, 528
BstEII	GGTNACC	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstMCI	CGRYCG	1 cut(s)	432
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	2 cut(s)	334, 506
BstPI	GGTNACC	1 cut(s)	235
BstSCI	CCNGG	3 cut(s)	23, 318, 373
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	133
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	3 cut(s)	98, 500, 504
CciI	TCATGA	1 cut(s)	393
CfoI	GCGC	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	520
Cfr13I	GGNCC	2 cut(s)	317, 518
CpoI	CGGWCCG	1 cut(s)	518
Csp6I	GTAC	2 cut(s)	14, 434
CspAI	ACCGGT	1 cut(s)	520
CspI	CGGWCCG	1 cut(s)	518
CviAII	CATG	4 cut(s)	296, 331, 394, 503
CviJI	RGCY	7 cut(s)	51, 141, 247, 318, 463, 488, 498
CviKI_1	RGCY	7 cut(s)	51, 141, 247, 318, 463, 488, 498
CviQI	GTAC	2 cut(s)	14, 434
DdeI	CTNAG	5 cut(s)	45, 267, 308, 456, 528
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	518
Eco57I	CTGAAG	1 cut(s)	311
Eco91I	GGTNACC	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	23
FaeI	CATG	4 cut(s)	299, 334, 397, 506
FaiI	YATR	7 cut(s)	59, 297, 332, 363, 369, 395, 504
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	4 cut(s)	295, 330, 393, 502
Fnu4HI	GCNGC	2 cut(s)	194, 316
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	2 cut(s)	194, 316
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	2 cut(s)	194, 316
GsuI	CTGGAG	2 cut(s)	122, 185
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	4 cut(s)	320, 356, 374, 521
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	4 cut(s)	299, 334, 397, 506
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	2 cut(s)	382, 438
HpaII	CCGG	4 cut(s)	320, 356, 374, 521
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	4 cut(s)	9, 254, 291, 518
Hpy188III	TCNNGA	5 cut(s)	117, 164, 307, 394, 451
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	3 cut(s)	113, 502, 506
HpyF3I	CTNAG	5 cut(s)	45, 267, 308, 456, 528
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	4 cut(s)	299, 334, 397, 506
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	78
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	3 cut(s)	60, 122, 342
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	1 cut(s)	361
MfeI	CAATTG	2 cut(s)	17, 84
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	5 cut(s)	17, 84, 364, 414, 479
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	6 cut(s)	97, 172, 183, 248, 262, 460
MspI	CCGG	4 cut(s)	320, 356, 374, 521
MspR9I	CCNGG	3 cut(s)	25, 320, 375
MunI	CAATTG	2 cut(s)	17, 84
MvaI	CCWGG	1 cut(s)	25
MvnI	CGCG	1 cut(s)	233
NciI	CCSGG	2 cut(s)	320, 375
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	4 cut(s)	299, 334, 397, 506
NspI	RCATGY	2 cut(s)	334, 506
PaeI	GCATGC	1 cut(s)	506
PagI	TCATGA	1 cut(s)	393
PciI	ACATGT	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	382, 438
Pfl23II	CGTACG	1 cut(s)	433
PinAI	ACCGGT	1 cut(s)	520
PkrI	GCNGC	2 cut(s)	195, 317
PscI	ACATGT	1 cut(s)	330
PsiI	TTATAA	1 cut(s)	363
Psp1406I	AACGTT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	23
PspEI	GGTNACC	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	23
PspLI	CGTACG	1 cut(s)	433
PspPI	GGNCC	2 cut(s)	317, 518
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	2 cut(s)	15, 435
RsaNI	GTAC	2 cut(s)	14, 434
Rsr2I	CGGWCCG	1 cut(s)	518
RsrII	CGGWCCG	1 cut(s)	518
SatI	GCNGC	2 cut(s)	194, 316
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	2 cut(s)	317, 518
ScrFI	CCNGG	3 cut(s)	25, 320, 375
SetI	ASST	5 cut(s)	33, 53, 242, 249, 288
SfaNI	GCATC	3 cut(s)	60, 122, 342
SinI	GGWCC	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	5 cut(s)	17, 84, 364, 414, 479
SsiI	CCGC	3 cut(s)	94, 233, 315
StyD4I	CCNGG	3 cut(s)	23, 318, 373
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	1 cut(s)	33
TasI	AATT	5 cut(s)	17, 84, 364, 414, 479
TatI	WGTACW	1 cut(s)	13
TauI	GCSGC	1 cut(s)	318
TfiI	GAWTC	2 cut(s)	382, 438
TseI	GCWGC	1 cut(s)	193
TspDTI	ATGAA	5 cut(s)	74, 362, 382, 410, 430
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	1 cut(s)	479
XceI	RCATGY	2 cut(s)	334, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.